Cp4.1LG20g02230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g02230
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ribosomal RNA small subunit methyltransferase G-like
Location	Cp4.1LG20: 1280025 .. 1285774 (-)
RNA-Seq Expression	Cp4.1LG20g02230
Synteny	Cp4.1LG20g02230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTGAGGAGAGGTCGAAGAGCGCGGGAAGATGGCAAGCACAGTCTCGTTCTCTTTGAGGACTTGTATCAAACAGTTTTCGGCTCTTTCGAAGCGAACGCCGGTCGATTTTCCGATCAGAACCAGAATTAAGCGATTTATTGTTACCTGCAATACTACGAGACATCTCCATTTTGAAACCCTAACTTCCCGCCAAAAAGATCAGGTTCATCTCTTCGTCGACGCTCTTCTCGAATGGAACAAGGTACTTGGTCTCTCCATTTTATTGGTATTTGTTGTTGTTAGCTTTAATTTGATGGCTGCATTGTTGAATTTTCATAGAAAATGAATCTTACGGCCATTACGGAAGAAAGCGAAGTGATGGAAAGGCACGTTGAGGATTCTCTCGCGATTATACCTCCAATTCGGAATCTGTACTTGTCGCATTGTTCGACGATTCCATGCGATAGCATTAAACTTGTCGATGTTGGAACGGGGGCCGGGCTTCCTGGATTGATTATAGCTATTGCTTGCCCAGGTCAACATAATCGATTATTATGATGATGAAAATGCATTATGTGCGCTACGGATCATTCTTTGATATAACGTATATTGATTGCTTCCTTATCCTTTGTTTTTTTTTGGGGGGGTTTAACTTGGGCTATTTGGATGGACTAGAATGGCAAGTAACGTTGATGGAGTCTATGAATAAGCGGTGCCTTTTCTTGGAGCACGCGGTCGGTCATACCGGTTTGACAAATGTTCATGTTGTGCGAGGAAGAGCAGAGGTACGTGGACATTAGCGTTTACGCAATTAAACACCCTGACCTAATTACCCATTCAAGTTTGATTCTCTTGTCTTGATTAGTTCATATACTTAATGACTAATATCGATTTTATTAAACAACGAACAAAATTTCTAGATTTTGCGATGTACCAATAGTATGTCTTCAAAAATGTGGAAGAGACACCTTTTTTGCATGAGTTGTGGTAAAGAGATTCAACAGTTCCTGGAAACGGTCTCGATTTCATCATTATATTCACTGTATTGTGAATACTCGAAGAAGTTTAAGTTATAATGAGGGTTCCCCTCGAGAACAATTTTTATTTCCTATGAAGTATTTGATTTATTATTTGAGAGAGAAGGGGAAGAACACTTGCTCGTGGCTCCAAACTTTATTTGTTTAATATTTAATGTGGCAGTGATATATCCTGATGTAGGGCAGAATCTGGGACATGATCTTTTCTTACGAGAGAAATTTGATGTAGTAGTGGCTAGAGCTGTTGCAGAAATGAGAATTTTAGGTACCATCTAATTTGATATGCATAAGTTCTACGAATCTAAGTTGTTTTACTTTTGCTTATTATTTTTCTCTGATATCTTTTCTTCAGCTGAATATTGTCTTCCTATGGTTCGTGTTGGGGGTTTGTTTTTAGCTGCCAAGGGCCATGACCCTCTTGTATGTTCTCTATCCATTAGCATTTTGAACGTCTACTCTCTGATTGTCTTGTCCTATTATTTTGGGACTGTATGCACTTCGTTACCATCATTGATACCGTTATTAATTGTTTTTTCAAGGTAGAGGCATTTGATGTGAAAATCTCCATTTCACTTCAATTTATTGCAGTTATTTGTTTTATTTTCCATACTTGAAAGTAGTCCTCATTTACAAATTATAATGCACAACAAGATATTAATTTTTATATGGTCAATCCGAAGTATATGTACAGATGCTAAACAATATTGTAGTGAATAATATAAATATAAAGATCTTGTGGTTGTGGATAGGTGGTAATTGTACCTTTTTACCACCATTTAAAATAGACTTATTTTGATTTAGGTCAGACCTCTTGTATACTTCGTGATAATGATGCAATGAAGAATCTTGTTTCTAATTGTGGAGATTTCTTTGAACTGAATTATTTTGAGTTGGCATATATCTAATTCATGTTGAGAAAGTTTATTTGCTTAAGTGGTACTCCTTTGGATTTTATATTTTATATAATCTTGTTGATTTTTGGTTTGTTTCCTTTTTTTTTTCTCTTTTGCAATTTTCGCATTGTCAGGAAGAAGTCACAAATGCAGAAAAGGCAATTGAAATGATGGGTGCTTCGTTACTGCAAATATGCCCTGGTGTGTTTGTCTTTCTGTTGGTTTTCCTGCAATGTCATAATCTCATGTGTACAGTAACAAAGTCAAACAAATTTGTGTGTAATTGAGGATTGCTTTATAGTACAGAGGTCTCTTCCTGAAAAGACACTCCCACTCTTAGCCCGTAGGCAGTTGGTTTTCTAGATACTTATACTAAGTTATTCCCATGTGTACTTGAACTACAAGAAATATTCTGATGCTGACAATTTCTGCTACCGTATCTATATCAACATGATGTATAAACTACTGAATTGGCCATTAAATATTTGGAATTTGCACCCATTCCAATGGATTTTGTCAAACTTATTTTTTTTTTGGCTTATGTTTTGCTTGCAAGAATTTGAATCTTTGTTCTAGTCTTTGGTTTGATTTATAGGATTTTCTTTGATTCTCAGATATGGGTTGTTCGTCTAATTTGCACGTAGAACTTAACAAATTGTATTATTCTTGTGGAAAAATCTTTTTCTCGAGCAAAATTTGATTTAAAATTATTTCCTTAACTAACTGTACTGGATTATTTTATTTACAGTTCGATCCACGAAGTAATTTACCTTATGCTTTAAATTTAACTTTACCCCAACTCTATGATGTAAATATTGTCTAAAGGTCCTTTTTTTTTCTTATGCAGTGGAATCACATAGTCCATATGGGCAGCGAACTGCCGTTGTTTGTTTAAAAGAACGGCACACTCCCAGGAAGTATCCTCGTGATCCAGGTACACCAGCGAAAGCCCCGTTATAATCATCTGGGTGTTCAGTTTGGTTTCATTTCACGTGTTCTTCTCAACGTCAACCAGTTGTTTATTATGCATAATGATTCAGGTGTGTGAGTCTATGATAATCACCTGAAGATAGACACCCTGTTATTTGTTGTGCATATCAAACATCATTTCACCCCGAGTAATTCTTATATGACATTTGGTTATTAAATTAGTATTCAAATTTATTTCCATTTTGGATTTATGTGTTGGTCTTTCGCCCTCCCGCCATTACCCCACCAAGTTCATCTCTTTCTCTACATCGACATATATAACTCCACCCTCGAAAGGAAAGGATGATGAAATTTAGTACAACATTTACTTTTTCGTATGAACTCTTATTTTTCTAAGAGTAGTATAAAGTAAATCTGAGTTCTTAATAAAATTAGTGATAAGGCGACAAAAATAACCATCATTATTTCATTGAGAGAGTGTCTAAAATATACTACTACAGTTGATTTGTGGCTGCCATAATCCTTGTTGAGGCATGGGGAGTTGCTTTTTGGAATATTTTATAGGTAAAGACTTCTGATCATCCATAAGATGAACGTTTATTTGTCTTCCTCATAGCTTTTCATAGATGCGATGGTGTAAATGATTTGCCATCTAATCGCTTTTCTCATGTCCAAGTTATCTATATTATTGCACTGCACCACGGACAAAGGAACAAACCTTGCTGAACCCAACCTGGAAAGATTCGCCCAGTGGAAAAGTTTGATAAACCGTGTCGCCAGGTATAAAGAACGTAAGCTGTACTTATAATTGCTAGATTAACTTGGTTTGAGTTTAAGTATATGATTAAACTTGTTAATATATAGAAATTTGGATGCAGTGTCTTATTCGATGACGATGTTTAGCTAAACTTCCAAGTTTTGAATTAATTAACACCACTCTCTTTAGTCAAAAGTAACGAGCTATATTGTTTGAGATAACCTTGTTTATTTCAATCTTCATGCAAATATCTCCCAGTTTTAGGCCACAGGTTTTGTATGGAAGTGTCCATCCATTTTTCTTGTATTGTTTATTGAGACTTTTGGGTCTTATCATTTCTTTTGGTGAATGATTAATTAAGATATAATTGTGAATATTGCATTTCCGTCCTTGCATTCCAAGGCATTCAATTTTAGTTTTTATATTAAAAGTATGCATTTTTTTTTTCTAGATATAGTTGTATCCATTCATTACTCCATTACTTATTCTATTTAAATAGTAAACTTTTTTAGTTTCTTATTATTTAATATATGTTGTAGCTTCAAGGTAGAAGGTTATGAATTTTTTTCCTTCAATAGTTGTAGAGGTGAGGATGTAAATTTTCAATTTTAAGAGAATATATTTAACTTAACAGTTAAAAGGAAGTTCTTTTTGTTAGATAGACGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTGCAGGAAACAAATAATCTGTGGAAAACCAAAGGGAATTAGGTTGGTATATGAAAAATGACTGTTTCCTAATCTCGCTCGACTTGTAAATCTGTAATATGCCAAGTAATAGGTAAAGTCTTTCACGCTTGATTTTTATAACATTTTTCAGGTGAAGATATTTTCAATTGATCCTTATGATATTTGGCTGCCACGTTTGCATAGTACAATAATAACTCGTTAATTTTCTTTTACATTTTTTTTTTGAAAAAGAAGCCATTGATGACAGCTTCTCGTTCAATTATTTCATTTATATAAATGTTTCGACTTATGTATGTTAAATTTACTAGGTATAAAGACATTTACTCACGTAGAGGTCAAGTTAGAAGCCAGGTTTGAATTCTCCATTCTTATTTGTTGAACTTTTTTTAAAAAATCTCGGTCTTGCTATATTTTAAATTTAAAATTTGACTTTGATGTGAACAATTTGTTTAATTATATGTTTTTTTTTTTTAATTAATAGGGTGTTTTTTTGAATTAAAGGGGTAGATGCTGGAAATTTTGACACTTGGTAAGGAGAAATTGTTATTATATGCATGAATGTCAGCAGCATTAATAATTTAATTATGGTCCATGCCCTATATTAATTCTTGTTTTACCAATAGAGCCCCACAATCCAACTAATTCTTGTTTGTAAAGAACTCATTTGCACAATTCTTTTTTATGGATCCCACTTCTACAAGAAAGGTATCATTTGAGGGGAAAAGTGCAAAAAAGATGTTGCAAAGGAAGGCTCGTGTGCTTTTCCTTTGTTCTTATTAGCATCATTTGGCTTTGCATCTCCACTATCCCTAATGTGTGCTAATTCATGCACGGTTTTGAAACTTCTAACGACCGTTATTATTAGATAAGTTTATAATGAAAAATATGCACACAAAGTGTTCGTTCTTAATTTATGTCTATTGTTGGACTCATTTGCATAGTCTATTATAGTGGAGGAAGCACAACATATCAATTAGGATTCAAAGGATCATTTGCATAATTTTCTTGCGTTCCTCGAGTTGCTAAGATAAATGGATTGGATTTATGTGCGAATTGATAAAGTCCAATGTTGGATTTATGTGCGAATCGATAAAGTCCAATGTTGTAAATAGTTCATATCGAATGTTGTAAATAGTTCATATATCTCAATATCCCTACTGTTGTCCACCCAATCACATTTTAATACAATACACCTGAAACTAAAAGAGCTTAACGTAATGAGATTTTTATCTTTAGCACTAAAAACCTAACTTGTTGTAGTGATAATTGTGCAATGTTCATAATCATAACGGATGATATAGAAAAGAAAAGAAAAAGTTAAGACTTCAAACATAATAAATAAACACGGGACCTTTTTTGAAGTTGAAATTTGTCTTTAAATTGTAACTTTAATAAGAAACAAACAAAAATAA

mRNA sequence

TGGTGAGGAGAGGTCGAAGAGCGCGGGAAGATGGCAAGCACAGTCTCGTTCTCTTTGAGGACTTGTATCAAACAGTTTTCGGCTCTTTCGAAGCGAACGCCGGTCGATTTTCCGATCAGAACCAGAATTAAGCGATTTATTGTTACCTGCAATACTACGAGACATCTCCATTTTGAAACCCTAACTTCCCGCCAAAAAGATCAGGTTCATCTCTTCGTCGACGCTCTTCTCGAATGGAACAAGAAAATGAATCTTACGGCCATTACGGAAGAAAGCGAAGTGATGGAAAGGCACGTTGAGGATTCTCTCGCGATTATACCTCCAATTCGGAATCTGTACTTGTCGCATTGTTCGACGATTCCATGCGATAGCATTAAACTTGTCGATGTTGGAACGGGGGCCGGGCTTCCTGGATTGATTATAGCTATTGCTTGCCCAGTGATATATCCTGATGTAGGGCAGAATCTGGGACATGATCTTTTCTTACGAGAGAAATTTGATGTAGTAGTGGCTAGAGCTGTTGCAGAAATGAGAATTTTAGCTGAATATTGTCTTCCTATGGTTCGTGTTGGGGGTTTGTTTTTAGCTGCCAAGGGCCATGACCCTCTTGAAGAAGTCACAAATGCAGAAAAGGCAATTGAAATGATGGGTGCTTCGTTACTGCAAATATGCCCTGTGGAATCACATAGTCCATATGGGCAGCGAACTGCCGTTGTTTGTTTAAAAGAACGGCACACTCCCAGGAAGTATCCTCGTGATCCAGGTACACCAGCGAAAGCCCCGTTATAATCATCTGGGTGTTCAGTTTGGTTTCATTTCACGTGTTCTTCTCAACGTCAACCAGTTGTTTATTATGCATAATGATTCAGTTGATTTGTGGCTGCCATAATCCTTGTTGAGGCATGGGGAGTTGCTTTTTGGAATATTTTATAGTTATCTATATTATTGCACTGCACCACGGACAAAGGAACAAACCTTGCTGAACCCAACCTGGAAAGATTCGCCCAGTGGAAAAGTTTGATAAACCGTGTCGCCAGGTATAAAGACATTTACTCACGTAGAGGTCAAGTTAGAAGCCAGGTTTGAATTCTCCATTCTTATTTGTTGAACTTTTTTTAAAAAATCTCGGTCTTGCTATATTTTAAATTTAAAATTTGACTTTGATGTGAACAATTTGTTTAATTATATGTTTTTTTTTTTTAATTAATAGGGTGTTTTTTTGAATTAAAGGGGTAGATGCTGGAAATTTTGACACTTGGTAAGGAGAAATTGTTATTATATGCATGAATGTCAGCAGCATTAATAATTTAATTATGGTCCATGCCCTATATTAATTCTTGTTTTACCAATAGAGCCCCACAATCCAACTAATTCTTGTTTGTAAAGAACTCATTTGCACAATTCTTTTTTATGGATCCCACTTCTACAAGAAAGGTATCATTTGAGGGGAAAAGTGCAAAAAAGATGTTGCAAAGGAAGGCTCGTGTGCTTTTCCTTTGTTCTTATTAGCATCATTTGGCTTTGCATCTCCACTATCCCTAATGTGTGCTAATTCATGCACGGTTTTGAAACTTCTAACGACCGTTATTATTAGATAAGTTTATAATGAAAAATATGCACACAAAGTGTTCGTTCTTAATTTATGTCTATTGTTGGACTCATTTGCATAGTCTATTATAGTGGAGGAAGCACAACATATCAATTAGGATTCAAAGGATCATTTGCATAATTTTCTTGCGTTCCTCGAGTTGCTAAGATAAATGGATTGGATTTATGTGCGAATTGATAAAGTCCAATGTTGGATTTATGTGCGAATCGATAAAGTCCAATGTTGTAAATAGTTCATATCGAATGTTGTAAATAGTTCATATATCTCAATATCCCTACTGTTGTCCACCCAATCACATTTTAATACAATACACCTGAAACTAAAAGAGCTTAACGTAATGAGATTTTTATCTTTAGCACTAAAAACCTAACTTGTTGTAGTGATAATTGTGCAATGTTCATAATCATAACGGATGATATAGAAAAGAAAAGAAAAAGTTAAGACTTCAAACATAATAAATAAACACGGGACCTTTTTTGAAGTTGAAATTTGTCTTTAAATTGTAACTTTAATAAGAAACAAACAAAAATAA

Coding sequence (CDS)

ATGGCAAGCACAGTCTCGTTCTCTTTGAGGACTTGTATCAAACAGTTTTCGGCTCTTTCGAAGCGAACGCCGGTCGATTTTCCGATCAGAACCAGAATTAAGCGATTTATTGTTACCTGCAATACTACGAGACATCTCCATTTTGAAACCCTAACTTCCCGCCAAAAAGATCAGGTTCATCTCTTCGTCGACGCTCTTCTCGAATGGAACAAGAAAATGAATCTTACGGCCATTACGGAAGAAAGCGAAGTGATGGAAAGGCACGTTGAGGATTCTCTCGCGATTATACCTCCAATTCGGAATCTGTACTTGTCGCATTGTTCGACGATTCCATGCGATAGCATTAAACTTGTCGATGTTGGAACGGGGGCCGGGCTTCCTGGATTGATTATAGCTATTGCTTGCCCAGTGATATATCCTGATGTAGGGCAGAATCTGGGACATGATCTTTTCTTACGAGAGAAATTTGATGTAGTAGTGGCTAGAGCTGTTGCAGAAATGAGAATTTTAGCTGAATATTGTCTTCCTATGGTTCGTGTTGGGGGTTTGTTTTTAGCTGCCAAGGGCCATGACCCTCTTGAAGAAGTCACAAATGCAGAAAAGGCAATTGAAATGATGGGTGCTTCGTTACTGCAAATATGCCCTGTGGAATCACATAGTCCATATGGGCAGCGAACTGCCGTTGTTTGTTTAAAAGAACGGCACACTCCCAGGAAGTATCCTCGTGATCCAGGTACACCAGCGAAAGCCCCGTTATAA

Protein sequence

MASTVSFSLRTCIKQFSALSKRTPVDFPIRTRIKRFIVTCNTTRHLHFETLTSRQKDQVHLFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDSIKLVDVGTGAGLPGLIIAIACPVIYPDVGQNLGHDLFLREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLLQICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL

Homology

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BLAST of Cp4.1LG20g02230 vs. ExPASy Swiss-Prot
Match: Q1WRS8 (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus salivarius (strain UCC118) OX=362948 GN=rsmG PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.0e-33
Identity = 85/232 (36.64%), Postives = 124/232 (53.45%), Query Frame = 0


Query: 51  LTSRQKDQVHLFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTI 110
           LT  Q  Q  L+ + L+E NK +NLTAITE++EV  +H  DSL +   +++L        
Sbjct: 17  LTDEQMQQFELYYEFLVETNKNLNLTAITEKNEVYLKHFYDSLLLALTVKDL-------- 76

Query: 111 PCDSIKLVDVGTGAGLPGLIIAIACPVIYPDVGQNLGHDL-FL----------------- 170
             + + L DVG GAG P L + IA P +   +  +L   + FL                 
Sbjct: 77  QTEELSLCDVGAGAGFPSLPVKIAFPQLKITIVDSLNKRIKFLQELTQKLNLQDVHFHHA 136

Query: 171 ------------REKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAE 230
                       RE++D+V ARAVA M +L+E CLP+ +VGG F+A K     EE+ NA+
Sbjct: 137 RAEEFGGKRSVHRERYDLVTARAVARMSVLSELCLPLAKVGGRFIALKAQKSDEELKNAQ 196

Query: 231 KAIEMMGASLLQICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 253
           KAIE++G  ++     E    + +R  +V  KE+ TP+KYPR  GTPAK+P+
Sbjct: 197 KAIEVLGGKVIADYATELPQVHDERHIIVVAKEKETPKKYPRKAGTPAKSPI 240

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BLAST of Cp4.1LG20g02230 vs. ExPASy Swiss-Prot
Match: A3DHY6 (Ribosomal RNA small subunit methyltransferase G OS=Hungateiclostridium thermocellum (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=rsmG PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.9e-32
Identity = 87/233 (37.34%), Postives = 126/233 (54.08%), Query Frame = 0


Query: 51  LTSRQKDQVHLFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTI 110
           L   Q D+   + D L EWN+KMNLTAI ++ E++ +H  DS++I P I++         
Sbjct: 23  LDDEQIDKFFAYKDVLKEWNQKMNLTAIEDDEEIILKHFIDSISICPIIKD--------- 82

Query: 111 PCDSIKLVDVGTGAGLPGLIIAIACPVIYPDVGQNL------------------------ 170
              ++ L+DVGTGAG PG+ + I  P +   +  +L                        
Sbjct: 83  --KNLALIDVGTGAGFPGIPVKIVFPELKVKLLDSLEKRTKFLNEVIERLDLKDISTVHA 142

Query: 171 -----GHDLFLREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEK 230
                G D   REK+D+ VARAVA + +L EYCLP V+VGG F+A KG+   EEV N++K
Sbjct: 143 RAEEKGVDPDYREKYDISVARAVASLPVLLEYCLPFVKVGGCFIAMKGNS-TEEVENSKK 202

Query: 231 AIEMMGASLLQICPVESHSPYG--QRTAVVCLKERHTPRKYPRDPGTPAKAPL 253
           A+E++G  +  I  +E + P+   +R  +V  K R TP KYPR  G P+K PL
Sbjct: 203 ALEILGGKIEDI--LEFNLPFSDIKRNVIVIKKFRQTPTKYPRKSGKPSKNPL 241

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BLAST of Cp4.1LG20g02230 vs. ExPASy Swiss-Prot
Match: A6TXE3 (Ribosomal RNA small subunit methyltransferase G OS=Alkaliphilus metalliredigens (strain QYMF) OX=293826 GN=rsmG PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.3e-32
Identity = 88/233 (37.77%), Postives = 123/233 (52.79%), Query Frame = 0


Query: 51  LTSRQKDQVHLFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTI 110
           +   Q  Q+  + D LLEWN+KMNLTAITEE EVM +H  DSL+    I++ YL    T 
Sbjct: 18  IDDNQVQQLLTYKDILLEWNEKMNLTAITEEEEVMVKHFLDSLSC---IQSQYLKEEGT- 77

Query: 111 PCDSIKLVDVGTGAGLPGLIIAIACPVI--------------YPDVGQNL---------- 170
                 ++DVGTGAG PG+ + +  P +                +V Q L          
Sbjct: 78  ------MIDVGTGAGFPGIPLKVYFPKLKLTLLDSLNKRVEFLKEVSQELGLEDVNFVHG 137

Query: 171 -----GHDLFLREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEK 230
                G +   RE++D  VARAVA + +L EYCLP V+VGG F+  KG    EE+ N++ 
Sbjct: 138 RAEECGQEETHREQYDYAVARAVASLNVLVEYCLPFVKVGGYFICQKGPQLKEEIQNSQN 197

Query: 231 AIEMMGASLLQICPVESHSPYGQRT--AVVCLKERHTPRKYPRDPGTPAKAPL 253
           AI ++G  +++    E   P+   T   +V  K + TP KYPR PGTP+K P+
Sbjct: 198 AITVLGGKVVE--QKEITLPFSDITHSLLVIEKIKQTPTKYPRKPGTPSKKPI 238

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BLAST of Cp4.1LG20g02230 vs. ExPASy Swiss-Prot
Match: A8MKR7 (Ribosomal RNA small subunit methyltransferase G OS=Alkaliphilus oremlandii (strain OhILAs) OX=350688 GN=rsmG PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.3e-32
Identity = 87/233 (37.34%), Postives = 126/233 (54.08%), Query Frame = 0


Query: 51  LTSRQKDQVHLFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTI 110
           +T  Q +Q+  + D LLEWN+KMNLTAI EE +VM +H  DSL+    I++ YL      
Sbjct: 18  ITDAQINQLIKYKDILLEWNQKMNLTAIEEEKDVMIKHFLDSLSC---IQSKYLKR---- 77

Query: 111 PCDSIKLVDVGTGAGLPGLIIAIACPVIYPDV---------------------------- 170
                K++DVGTGAG PG+ + IA P I   +                            
Sbjct: 78  ---EGKMIDVGTGAGFPGVPLKIALPGIELTLLDSLRKRISFLEEVCAETKLGQVDFVHG 137

Query: 171 -GQNLGHDLFLREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEK 230
             +++G     REK+D  V+RAVA + +L EYCLP V+VGG F+  KG   +EE+ +AEK
Sbjct: 138 RAEDIGQSKDYREKYDYAVSRAVAALNVLVEYCLPFVKVGGYFICQKGPQIIEELPDAEK 197

Query: 231 AIEMMGASLLQICPVESHSPYGQRT--AVVCLKERHTPRKYPRDPGTPAKAPL 253
           AI+++G  +++   V+   P+   T   +V  K + TP KYPR  G P+K P+
Sbjct: 198 AIKVLGGEVVEQISVD--LPFSDITHHILVIKKIKQTPSKYPRKAGKPSKEPI 238

[Close]

BLAST of Cp4.1LG20g02230 vs. ExPASy Swiss-Prot
Match: Q630C0 (Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain ZK / E33L) OX=288681 GN=rsmG PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.7e-31
Identity = 80/232 (34.48%), Postives = 118/232 (50.86%), Query Frame = 0


Query: 50  TLTSRQKDQVHLFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCST 109
           TL+SRQ +Q  ++ + L+EWN+KMNLTAITE+ EV  +H  DS+         Y      
Sbjct: 16  TLSSRQLEQFEIYFETLVEWNEKMNLTAITEKEEVYLKHFFDSITAA-----FYYDFSK- 75

Query: 110 IPCDSIKLVDVGTGAGLPGLIIAIACP-----------------------------VIYP 169
                  + DVG GAG P + + I  P                                 
Sbjct: 76  ----PFSICDVGAGAGFPSIPLKICFPHLKVTIVDSLQKRINFLNHLAQKLELSDVAFCH 135

Query: 170 DVGQNLGHDLFLREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAE 229
           D  +  G    +RE +D+V+ARAVA + +L+E CLP+V+VGG F+A KG    EE+ N +
Sbjct: 136 DRAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAAKEEIENGK 195

Query: 230 KAIEMMGASLLQICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 253
            A+E++G  L ++   +      +R  ++  K+R TP+KYPR PGTP K P+
Sbjct: 196 YALEVLGGDLKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237

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BLAST of Cp4.1LG20g02230 vs. NCBI nr
Match: XP_023519008.1 (uncharacterized protein LOC111782483 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 477 bits (1228), Expect = 6.48e-169
Identity = 246/281 (87.54%), Postives = 248/281 (88.26%), Query Frame = 0


Query: 1   MASTVSFSLRTCIKQFSALSKRTPVDFPIRTRIKRFIVTCNTTRHLHFETLTSRQKDQVH 60
           MASTVSFSLRTCIKQFSALSKRTPVDFPIRTRIKRFIVTCNTTRHLHFETLTSRQKDQVH
Sbjct: 1   MASTVSFSLRTCIKQFSALSKRTPVDFPIRTRIKRFIVTCNTTRHLHFETLTSRQKDQVH 60

Query: 61  LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDSIKLVDV 120
           LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDSIKLVDV
Sbjct: 61  LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDSIKLVDV 120

Query: 121 GTGAGLPGLIIAIACP---------------VIYPDVG--------------QNLGHDLF 180
           GTGAGLPGLIIAIACP                +   VG              +NLGHDLF
Sbjct: 121 GTGAGLPGLIIAIACPEWQVTLMESMNKRCLFLEHAVGHTGLTNVHVVRGRAENLGHDLF 180

Query: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240
           LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL
Sbjct: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240

Query: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 252
           QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL
Sbjct: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 281

[Close]

BLAST of Cp4.1LG20g02230 vs. NCBI nr
Match: XP_022923607.1 (uncharacterized protein LOC111431267 [Cucurbita moschata] >KAG7019834.1 rsmG, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 468 bits (1203), Expect = 4.18e-165
Identity = 241/281 (85.77%), Postives = 243/281 (86.48%), Query Frame = 0


Query: 1   MASTVSFSLRTCIKQFSALSKRTPVDFPIRTRIKRFIVTCNTTRHLHFETLTSRQKDQVH 60
           MASTVSFSLRTCIKQFSALSKRTP DFPIRTR KRFIVTCNT RHLHFETLTSRQKDQVH
Sbjct: 1   MASTVSFSLRTCIKQFSALSKRTPFDFPIRTRFKRFIVTCNTPRHLHFETLTSRQKDQVH 60

Query: 61  LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDSIKLVDV 120
           LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLY SHCSTIPCD IKLVDV
Sbjct: 61  LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYSSHCSTIPCDGIKLVDV 120

Query: 121 GTGAGLPGLIIAIACP---------------VIYPDVG--------------QNLGHDLF 180
           GTGAGLPGLIIAIACP                +   VG              +NLGHDLF
Sbjct: 121 GTGAGLPGLIIAIACPEWQVTLMESMNKRCLFLEHAVGHTGLTNVHVVRGRAENLGHDLF 180

Query: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240
           LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL
Sbjct: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240

Query: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 252
           QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL
Sbjct: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 281

[Close]

BLAST of Cp4.1LG20g02230 vs. NCBI nr
Match: XP_023000748.1 (uncharacterized protein LOC111495105 [Cucurbita maxima])

HSP 1 Score: 462 bits (1190), Expect = 4.00e-163
Identity = 237/281 (84.34%), Postives = 241/281 (85.77%), Query Frame = 0


Query: 1   MASTVSFSLRTCIKQFSALSKRTPVDFPIRTRIKRFIVTCNTTRHLHFETLTSRQKDQVH 60
           MASTVSFSLRTCIKQFS LSKRTP DFPIRTR KRFIVTCNT RHLHFETLTSRQKDQVH
Sbjct: 1   MASTVSFSLRTCIKQFSVLSKRTPFDFPIRTRFKRFIVTCNTPRHLHFETLTSRQKDQVH 60

Query: 61  LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDSIKLVDV 120
           LFVDALLEWNKKMNLTA+TEESEVMERHVEDSLAIIPPIRNLY SHCSTIPCD IKL+DV
Sbjct: 61  LFVDALLEWNKKMNLTAVTEESEVMERHVEDSLAIIPPIRNLYSSHCSTIPCDGIKLLDV 120

Query: 121 GTGAGLPGLIIAIACP---------------VIYPDVG--------------QNLGHDLF 180
           GTGAGLPGLIIAIACP                +   VG              +NLGHDLF
Sbjct: 121 GTGAGLPGLIIAIACPEWQVTLMESMNKRCLFLEHAVGHTGLTNVHVVRGRAENLGHDLF 180

Query: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240
           LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL
Sbjct: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240

Query: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 252
           QICPVESHSPYGQR AVVCLKERHTPRKYPRDPGTPAKAPL
Sbjct: 241 QICPVESHSPYGQRNAVVCLKERHTPRKYPRDPGTPAKAPL 281

[Close]

BLAST of Cp4.1LG20g02230 vs. NCBI nr
Match: KAG6584238.1 (hypothetical protein SDJN03_20170, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 451 bits (1161), Expect = 2.15e-158
Identity = 233/273 (85.35%), Postives = 235/273 (86.08%), Query Frame = 0


Query: 1   MASTVSFSLRTCIKQFSALSKRTPVDFPIRTRIKRFIVTCNTTRHLHFETLTSRQKDQVH 60
           MASTVSFSLRTCIKQFSALSKRTP DFPIRTR KRFIVTCNT RHLHFETLTSRQKDQVH
Sbjct: 1   MASTVSFSLRTCIKQFSALSKRTPFDFPIRTRFKRFIVTCNTPRHLHFETLTSRQKDQVH 60

Query: 61  LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDSIKLVDV 120
           LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLY SHCSTIPCD IKLVDV
Sbjct: 61  LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYSSHCSTIPCDGIKLVDV 120

Query: 121 GTGAGLPGLIIAIACP---------------VIYPDVG--------------QNLGHDLF 180
           GTGAGLPGLIIAIACP                +   VG              +NLGHDLF
Sbjct: 121 GTGAGLPGLIIAIACPEWQVTLMESMNKRCLFLEHAVGHTGLTNVHVVRGRAENLGHDLF 180

Query: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240
           LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL
Sbjct: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240

Query: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDP 244
           QICPVESHSPYGQRTAVVCLKERHTPRKYPRDP
Sbjct: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDP 273

[Close]

BLAST of Cp4.1LG20g02230 vs. NCBI nr
Match: XP_038894980.1 (ribosomal RNA small subunit methyltransferase G [Benincasa hispida])

HSP 1 Score: 432 bits (1112), Expect = 3.05e-151
Identity = 224/281 (79.72%), Postives = 235/281 (83.63%), Query Frame = 0


Query: 1   MASTVSFSLRTCIKQFSALSKRTPVDFPIRTRIKRFIVTCNTTRHLHFETLTSRQKDQVH 60
           MA+TVSFSLRT IKQFSALSK T  +FP+RT  KR  VTC+TTR+LHFETLTSRQKDQVH
Sbjct: 1   MATTVSFSLRTFIKQFSALSKPTAFNFPVRTSFKRLNVTCSTTRYLHFETLTSRQKDQVH 60

Query: 61  LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDSIKLVDV 120
           LFVDALL+WN+KMNLTA+TE SEVMERHVEDSLAIIPPIRNLYLSHCSTI CD IKLVDV
Sbjct: 61  LFVDALLQWNQKMNLTAVTEVSEVMERHVEDSLAIIPPIRNLYLSHCSTISCDDIKLVDV 120

Query: 121 GTGAGLPGLIIAIACP---------------VIYPDVG--------------QNLGHDLF 180
           GTGAGLPGLIIAIACP                +   VG              +NLGHDL 
Sbjct: 121 GTGAGLPGLIIAIACPEWQVTLMESMNKRCVFLEHAVGHTGLTNVQVVRGRAENLGHDLC 180

Query: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240
           LREKFDVVVARAVAEMR+LAEYCLPMVRVGGLFLAAKGHDPL EVTNAEKAIEMMGASLL
Sbjct: 181 LREKFDVVVARAVAEMRVLAEYCLPMVRVGGLFLAAKGHDPLAEVTNAEKAIEMMGASLL 240

Query: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 252
           QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL
Sbjct: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 281

[Close]

BLAST of Cp4.1LG20g02230 vs. ExPASy TrEMBL
Match: A0A6J1E6K7 (uncharacterized protein LOC111431267 OS=Cucurbita moschata OX=3662 GN=LOC111431267 PE=3 SV=1)

HSP 1 Score: 468 bits (1203), Expect = 2.02e-165
Identity = 241/281 (85.77%), Postives = 243/281 (86.48%), Query Frame = 0


Query: 1   MASTVSFSLRTCIKQFSALSKRTPVDFPIRTRIKRFIVTCNTTRHLHFETLTSRQKDQVH 60
           MASTVSFSLRTCIKQFSALSKRTP DFPIRTR KRFIVTCNT RHLHFETLTSRQKDQVH
Sbjct: 1   MASTVSFSLRTCIKQFSALSKRTPFDFPIRTRFKRFIVTCNTPRHLHFETLTSRQKDQVH 60

Query: 61  LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDSIKLVDV 120
           LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLY SHCSTIPCD IKLVDV
Sbjct: 61  LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYSSHCSTIPCDGIKLVDV 120

Query: 121 GTGAGLPGLIIAIACP---------------VIYPDVG--------------QNLGHDLF 180
           GTGAGLPGLIIAIACP                +   VG              +NLGHDLF
Sbjct: 121 GTGAGLPGLIIAIACPEWQVTLMESMNKRCLFLEHAVGHTGLTNVHVVRGRAENLGHDLF 180

Query: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240
           LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL
Sbjct: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240

Query: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 252
           QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL
Sbjct: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 281

[Close]

BLAST of Cp4.1LG20g02230 vs. ExPASy TrEMBL
Match: A0A6J1KNI1 (uncharacterized protein LOC111495105 OS=Cucurbita maxima OX=3661 GN=LOC111495105 PE=3 SV=1)

HSP 1 Score: 462 bits (1190), Expect = 1.94e-163
Identity = 237/281 (84.34%), Postives = 241/281 (85.77%), Query Frame = 0


Query: 1   MASTVSFSLRTCIKQFSALSKRTPVDFPIRTRIKRFIVTCNTTRHLHFETLTSRQKDQVH 60
           MASTVSFSLRTCIKQFS LSKRTP DFPIRTR KRFIVTCNT RHLHFETLTSRQKDQVH
Sbjct: 1   MASTVSFSLRTCIKQFSVLSKRTPFDFPIRTRFKRFIVTCNTPRHLHFETLTSRQKDQVH 60

Query: 61  LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDSIKLVDV 120
           LFVDALLEWNKKMNLTA+TEESEVMERHVEDSLAIIPPIRNLY SHCSTIPCD IKL+DV
Sbjct: 61  LFVDALLEWNKKMNLTAVTEESEVMERHVEDSLAIIPPIRNLYSSHCSTIPCDGIKLLDV 120

Query: 121 GTGAGLPGLIIAIACP---------------VIYPDVG--------------QNLGHDLF 180
           GTGAGLPGLIIAIACP                +   VG              +NLGHDLF
Sbjct: 121 GTGAGLPGLIIAIACPEWQVTLMESMNKRCLFLEHAVGHTGLTNVHVVRGRAENLGHDLF 180

Query: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240
           LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL
Sbjct: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240

Query: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 252
           QICPVESHSPYGQR AVVCLKERHTPRKYPRDPGTPAKAPL
Sbjct: 241 QICPVESHSPYGQRNAVVCLKERHTPRKYPRDPGTPAKAPL 281

[Close]

BLAST of Cp4.1LG20g02230 vs. ExPASy TrEMBL
Match: A0A0A0LW74 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045840 PE=3 SV=1)

HSP 1 Score: 431 bits (1108), Expect = 6.01e-151
Identity = 223/281 (79.36%), Postives = 232/281 (82.56%), Query Frame = 0


Query: 1   MASTVSFSLRTCIKQFSALSKRTPVDFPIRTRIKRFIVTCNTTRHLHFETLTSRQKDQVH 60
           MASTVSFSLRT IKQFS L KRTP  FPIRT  KR  VTCN++R LHFETLTSRQKDQVH
Sbjct: 1   MASTVSFSLRTFIKQFSPLPKRTPFSFPIRTSFKRLTVTCNSSRFLHFETLTSRQKDQVH 60

Query: 61  LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDSIKLVDV 120
           LFVDALL+WN+KMNLTAITE +EVMERHVEDSLAIIPPIRNLY+SHCST PCD IKLVDV
Sbjct: 61  LFVDALLQWNQKMNLTAITEVNEVMERHVEDSLAIIPPIRNLYMSHCSTSPCDDIKLVDV 120

Query: 121 GTGAGLPGLIIAIACP---------------VIYPDVG--------------QNLGHDLF 180
           GTGAGLPGLIIAIACP                +   VG              +NLGHDL 
Sbjct: 121 GTGAGLPGLIIAIACPEWQVTLMESMNKRCLFLEHAVGHTGLTNVQVVRGRAENLGHDLS 180

Query: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240
           LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPL EVTNAEKAIEMMGASLL
Sbjct: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLAEVTNAEKAIEMMGASLL 240

Query: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 252
           QICPVESHSPYGQRTAVVC KERHTPRKYPRDPGTPAK+PL
Sbjct: 241 QICPVESHSPYGQRTAVVCFKERHTPRKYPRDPGTPAKSPL 281

[Close]

BLAST of Cp4.1LG20g02230 vs. ExPASy TrEMBL
Match: A0A5A7UNI8 (Ribosomal RNA small subunit methyltransferase G isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G00460 PE=3 SV=1)

HSP 1 Score: 428 bits (1101), Expect = 7.00e-150
Identity = 221/281 (78.65%), Postives = 231/281 (82.21%), Query Frame = 0


Query: 1   MASTVSFSLRTCIKQFSALSKRTPVDFPIRTRIKRFIVTCNTTRHLHFETLTSRQKDQVH 60
           MAST+SFSLRT IKQFS LSKRT  +FPIRT  KR  VTCN++R LHFETLTSRQKDQVH
Sbjct: 1   MASTLSFSLRTFIKQFSPLSKRTRFNFPIRTSFKRLNVTCNSSRFLHFETLTSRQKDQVH 60

Query: 61  LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDSIKLVDV 120
           LFVDALL+WN+KMNLTAITE +EVMERHVEDSLAIIPPIRNLYLSHCSTIPCD IKLVDV
Sbjct: 61  LFVDALLQWNQKMNLTAITEVNEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDDIKLVDV 120

Query: 121 GTGAGLPGLIIAIACPVIYPDV-----------------------------GQNLGHDLF 180
           GTGAGLPGLIIAIACP  +  +                              +NLGHDL 
Sbjct: 121 GTGAGLPGLIIAIACPEWHVTLMESMNKRCLFLEHAVGHTGLTNVQVVRGRAENLGHDLS 180

Query: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240
           LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPL EVTNA KAIEMMGASLL
Sbjct: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLAEVTNAGKAIEMMGASLL 240

Query: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 252
           QICPVESHSPYGQRTAVVC KERHTPRKYPRDPGTPAK PL
Sbjct: 241 QICPVESHSPYGQRTAVVCFKERHTPRKYPRDPGTPAKTPL 281

[Close]

BLAST of Cp4.1LG20g02230 vs. ExPASy TrEMBL
Match: A0A5D3BLB2 (Ribosomal RNA small subunit methyltransferase G isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003410 PE=3 SV=1)

HSP 1 Score: 428 bits (1100), Expect = 9.94e-150
Identity = 221/281 (78.65%), Postives = 232/281 (82.56%), Query Frame = 0


Query: 1   MASTVSFSLRTCIKQFSALSKRTPVDFPIRTRIKRFIVTCNTTRHLHFETLTSRQKDQVH 60
           MAST+SFSLRT IKQFS LSKRT  +FPIRT  KR  VTCN++R LHFETLTSRQKDQVH
Sbjct: 1   MASTLSFSLRTFIKQFSPLSKRTRFNFPIRTSFKRLNVTCNSSRFLHFETLTSRQKDQVH 60

Query: 61  LFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDSIKLVDV 120
           LFVDALL+WN+KMNLTAITE +EVMERHVEDSLAIIPPIRNLYLSHCSTIPC+ IKLVDV
Sbjct: 61  LFVDALLQWNQKMNLTAITEVNEVMERHVEDSLAIIPPIRNLYLSHCSTIPCNDIKLVDV 120

Query: 121 GTGAGLPGLIIAIACPVIYPDV-----------------------------GQNLGHDLF 180
           GTGAGLPGLIIAIACP  +  +                              +NLGHDL 
Sbjct: 121 GTGAGLPGLIIAIACPEWHVTLMESMNKRCLFLEHAVGHTGLTNVQVVRGRAENLGHDLS 180

Query: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTNAEKAIEMMGASLL 240
           LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPL EVTNA KAIEMMGASLL
Sbjct: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLAEVTNAGKAIEMMGASLL 240

Query: 241 QICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 252
           QICPVESHSPYGQRTAVVC KERHTPRKYPRDPGTPAKAPL
Sbjct: 241 QICPVESHSPYGQRTAVVCFKERHTPRKYPRDPGTPAKAPL 281

[Close]

BLAST of Cp4.1LG20g02230 vs. TAIR 10
Match: AT5G50110.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 274.6 bits (701), Expect = 7.8e-74
Identity = 136/234 (58.12%), Postives = 167/234 (71.37%), Query Frame = 0


Query: 48  FETLTSRQKDQVHLFVDALLEWNKKMNLTAITEESEVMERHVEDSLAIIPPIRNLYLSHC 107
           F+TL+S Q+DQ+HL+VD LL+WN+KMNLTA  E  EVMERH+EDSLAI+PPI+  Y  H 
Sbjct: 60  FKTLSSSQQDQIHLYVDTLLQWNQKMNLTATKEADEVMERHIEDSLAILPPIKTCYNLHS 119

Query: 108 STIPCDSIKLVDVGTGAGLPGLIIAIACP-----------------------------VI 167
           S +  D I L+DVG+GAGLPGL++AIACP                              I
Sbjct: 120 SDL-FDHINLIDVGSGAGLPGLVLAIACPDWRVTLLESINKRCVFLEHVVNVTGLTNVTI 179

Query: 168 YPDVGQNLGHDLFLREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLEEVTN 227
                ++ GHD+  REKFDV +ARAVAEMR+LAEYCLP+VR+GGLF+AAKGHDP EEV N
Sbjct: 180 VRGRAESCGHDVMYREKFDVAIARAVAEMRVLAEYCLPLVRIGGLFVAAKGHDPKEEVQN 239

Query: 228 AEKAIEMMGASLLQICPVESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 253
           AE A+ ++G S+LQI PV+SHSPYGQRT VVC K+  TP+KYPR+ GTPAK PL
Sbjct: 240 AENAVRLLGGSILQISPVDSHSPYGQRTTVVCRKDHSTPQKYPREAGTPAKLPL 292

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g02230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1WRS8	5.0e-33	36.64	Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus salivarius (str...	[more]
A3DHY6	1.9e-32	37.34	Ribosomal RNA small subunit methyltransferase G OS=Hungateiclostridium thermocel...	[more]
A6TXE3	9.3e-32	37.77	Ribosomal RNA small subunit methyltransferase G OS=Alkaliphilus metalliredigens ...	[more]
A8MKR7	9.3e-32	37.34	Ribosomal RNA small subunit methyltransferase G OS=Alkaliphilus oremlandii (stra...	[more]
Q630C0	2.7e-31	34.48	Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain ZK / ...	[more]

BLAST of Cp4.1LG20g02230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519008.1	6.48e-169	87.54	uncharacterized protein LOC111782483 [Cucurbita pepo subsp. pepo]	[more]
XP_022923607.1	4.18e-165	85.77	uncharacterized protein LOC111431267 [Cucurbita moschata] >KAG7019834.1 rsmG, pa...	[more]
XP_023000748.1	4.00e-163	84.34	uncharacterized protein LOC111495105 [Cucurbita maxima]	[more]
KAG6584238.1	2.15e-158	85.35	hypothetical protein SDJN03_20170, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038894980.1	3.05e-151	79.72	ribosomal RNA small subunit methyltransferase G [Benincasa hispida]	[more]

BLAST of Cp4.1LG20g02230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6K7	2.02e-165	85.77	uncharacterized protein LOC111431267 OS=Cucurbita moschata OX=3662 GN=LOC1114312...	[more]
A0A6J1KNI1	1.94e-163	84.34	uncharacterized protein LOC111495105 OS=Cucurbita maxima OX=3661 GN=LOC111495105...	[more]
A0A0A0LW74	6.01e-151	79.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045840 PE=3 SV=1	[more]
A0A5A7UNI8	7.00e-150	78.65	Ribosomal RNA small subunit methyltransferase G isoform X2 OS=Cucumis melo var. ...	[more]
A0A5D3BLB2	9.94e-150	78.65	Ribosomal RNA small subunit methyltransferase G isoform X2 OS=Cucumis melo var. ...	[more]

BLAST of Cp4.1LG20g02230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50110.1	7.8e-74	58.12	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003682	rRNA small subunit methyltransferase G	PFAM	PF02527	GidB	coord: 56..137 e-value: 2.6E-17 score: 62.7 coord: 153..213 e-value: 3.9E-11 score: 42.6
IPR003682	rRNA small subunit methyltransferase G	PANTHER	PTHR31760	S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN	coord: 3..137 coord: 145..252
IPR003682	rRNA small subunit methyltransferase G	HAMAP	MF_00074	16SrRNA_methyltr_G	coord: 48..229 score: 18.292887
None	No IPR available	GENE3D	3.40.50.150	Vaccinia Virus protein VP39	coord: 41..139 e-value: 6.7E-26 score: 92.8
None	No IPR available	GENE3D	3.40.50.150	Vaccinia Virus protein VP39	coord: 140..252 e-value: 5.0E-32 score: 113.0
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 45..251

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g02230.1	Cp4.1LG20g02230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031167	rRNA methylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0008649	rRNA methyltransferase activity