Cp4.1LG20g01460 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g01460
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	C2 domain-containing protein
Location	Cp4.1LG20: 872328 .. 872543 (+)
RNA-Seq Expression	Cp4.1LG20g01460
Synteny	Cp4.1LG20g01460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGTTCACCAAAAAGTCCAGAGTGCGGCGGAGAGGGAGCCCAACCTTCATCTTCGTTAATGGATAGCTTATTGGGTCTTCTTCGGGTTCGGGTCATTCGCGGCGTCAACCTCGCCGTACGCGACGTCCGCAGCAGCGATCCTTACATTGTCGTTAAAATGTCCAAACAGGTCACGCCCTTAACCTTAAAATCTCCAAACACGTTGCATTAA

mRNA sequence

ATGGCAGGTTCACCAAAAAGTCCAGAGTGCGGCGGAGAGGGAGCCCAACCTTCATCTTCGTTAATGGATAGCTTATTGGGTCTTCTTCGGGTTCGGGTCATTCGCGGCGTCAACCTCGCCGTACGCGACGTCCGCAGCAGCGATCCTTACATTGTCGTTAAAATGTCCAAACAGGTCACGCCCTTAACCTTAAAATCTCCAAACACGTTGCATTAA

Coding sequence (CDS)

ATGGCAGGTTCACCAAAAAGTCCAGAGTGCGGCGGAGAGGGAGCCCAACCTTCATCTTCGTTAATGGATAGCTTATTGGGTCTTCTTCGGGTTCGGGTCATTCGCGGCGTCAACCTCGCCGTACGCGACGTCCGCAGCAGCGATCCTTACATTGTCGTTAAAATGTCCAAACAGGTCACGCCCTTAACCTTAAAATCTCCAAACACGTTGCATTAA

Protein sequence

MAGSPKSPECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQVTPLTLKSPNTLH

Homology

[Close]

BLAST of Cp4.1LG20g01460 vs. ExPASy Swiss-Prot
Match: Q9LVH4 (Protein C2-DOMAIN ABA-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=CAR4 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.5e-11
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 18 SSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 59
          +SSLMD LLGLLR+R+ RGVNLAVRD+ SSDPY+VVKM KQ
Sbjct: 9  TSSLMDDLLGLLRIRIKRGVNLAVRDISSSDPYVVVKMGKQ 49

[Close]

BLAST of Cp4.1LG20g01460 vs. ExPASy Swiss-Prot
Match: Q9LP65 (Protein C2-DOMAIN ABA-RELATED 5 OS=Arabidopsis thaliana OX=3702 GN=CAR5 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.7e-11
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 20 SLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 59
          SLMDSLLGLLR+R+ RGVNLAVRD+ SSDPY+VVKM+KQ
Sbjct: 35 SLMDSLLGLLRIRIKRGVNLAVRDLNSSDPYVVVKMAKQ 73

[Close]

BLAST of Cp4.1LG20g01460 vs. ExPASy Swiss-Prot
Match: Q9C6B7 (Protein C2-DOMAIN ABA-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=CAR3 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-09
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 20 SLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 59
          SLMD+LLG+LRVRV RGVNLAVRDV SSDPY+V+K+ +Q
Sbjct: 2  SLMDNLLGILRVRVQRGVNLAVRDVSSSDPYVVLKLGRQ 40

[Close]

BLAST of Cp4.1LG20g01460 vs. ExPASy Swiss-Prot
Match: A2X479 (GTPase activating protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_07012 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-08
Identity = 25/38 (65.79%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 21 LMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 59
          ++  L+GL++VRV+RGVNLAVRD+RSSDPY++V+M KQ
Sbjct: 1  MLGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQ 38

[Close]

BLAST of Cp4.1LG20g01460 vs. ExPASy Swiss-Prot
Match: Q6YWF1 (GTPase activating protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GAP1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-08
Identity = 25/38 (65.79%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 21 LMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 59
          ++  L+GL++VRV+RGVNLAVRD+RSSDPY++V+M KQ
Sbjct: 1  MLGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQ 38

[Close]

BLAST of Cp4.1LG20g01460 vs. NCBI nr
Match: XP_022923777.1 (protein C2-DOMAIN ABA-RELATED 4-like [Cucurbita moschata])

HSP 1 Score: 112 bits (281), Expect = 1.03e-28
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MAGSPKSPECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 58
          MAGSPKSPECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ
Sbjct: 1  MAGSPKSPECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 58

[Close]

BLAST of Cp4.1LG20g01460 vs. NCBI nr
Match: XP_023520191.1 (protein C2-DOMAIN ABA-RELATED 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112 bits (281), Expect = 1.03e-28
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MAGSPKSPECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 58
          MAGSPKSPECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ
Sbjct: 1  MAGSPKSPECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 58

[Close]

BLAST of Cp4.1LG20g01460 vs. NCBI nr
Match: KAG6584318.1 (Protein C2-DOMAIN ABA-RELATED 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (268), Expect = 4.36e-27
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MAGSPKSPECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 58
          MAGSPKS ECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIV+KMSKQ
Sbjct: 1  MAGSPKSLECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVLKMSKQ 58

[Close]

BLAST of Cp4.1LG20g01460 vs. NCBI nr
Match: KAG7019910.1 (Protein C2-DOMAIN ABA-RELATED 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107 bits (268), Expect = 3.90e-26
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   MAGSPKSPECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 58
           MAGSPKS ECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIV+KMSKQ
Sbjct: 79  MAGSPKSLECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVLKMSKQ 136

[Close]

BLAST of Cp4.1LG20g01460 vs. NCBI nr
Match: KAG7012152.1 (Protein C2-DOMAIN ABA-RELATED 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.7 bits (221), Expect = 2.36e-20
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 4  SPKSPECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 58
          SPKSPE GG G + SSSLM+SLLGLLR+R+IRGVNLAVRDVRSSDPYIVVK++KQ
Sbjct: 6  SPKSPESGGGGGRSSSSLMESLLGLLRIRIIRGVNLAVRDVRSSDPYIVVKLNKQ 60

[Close]

BLAST of Cp4.1LG20g01460 vs. ExPASy TrEMBL
Match: A0A6J1E733 (protein C2-DOMAIN ABA-RELATED 4-like OS=Cucurbita moschata OX=3662 GN=LOC111431387 PE=3 SV=1)

HSP 1 Score: 112 bits (281), Expect = 4.97e-29
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MAGSPKSPECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 58
          MAGSPKSPECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ
Sbjct: 1  MAGSPKSPECGGEGAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 58

[Close]

BLAST of Cp4.1LG20g01460 vs. ExPASy TrEMBL
Match: A0A1S4DT23 (protein C2-DOMAIN ABA-RELATED 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502345 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.24e-18
Identity = 47/66 (71.21%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1  MAGSPKSPECGGEGA--------QPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIV 58
          M  SPKSPE G  G         + SSSLM+SLLGLLR+R+IRGVNLAVRDVRSSDPYIV
Sbjct: 1  MGDSPKSPESGSGGGGGGSSGGGRCSSSLMESLLGLLRIRIIRGVNLAVRDVRSSDPYIV 60

[Close]

BLAST of Cp4.1LG20g01460 vs. ExPASy TrEMBL
Match: A0A0A0LVV8 (C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042830 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.21e-18
Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1  MAGSPKSPECGGE----GAQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMS 58
          M  SPKSPE  G     G + SSSLM+SLLGLLRVR+IRGVNLAVRDVRSSDPYIVVKMS
Sbjct: 1  MGDSPKSPESSGGSGRGGGRCSSSLMESLLGLLRVRIIRGVNLAVRDVRSSDPYIVVKMS 60

[Close]

BLAST of Cp4.1LG20g01460 vs. ExPASy TrEMBL
Match: A0A5D3BIY4 (Protein C2-DOMAIN ABA-RELATED 4-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002380 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.58e-18
Identity = 47/66 (71.21%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1  MAGSPKSPECGGEGA--------QPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIV 58
          M  SPKSPE G  G         + SSSLM+SLLGLLR+R+IRGVNLAVRDVRSSDPYIV
Sbjct: 1  MGDSPKSPESGSGGGGGGSSGGGRCSSSLMESLLGLLRIRIIRGVNLAVRDVRSSDPYIV 60

[Close]

BLAST of Cp4.1LG20g01460 vs. ExPASy TrEMBL
Match: A0A1S3CLZ2 (protein C2-DOMAIN ABA-RELATED 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502345 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.58e-18
Identity = 47/66 (71.21%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1  MAGSPKSPECGGEGA--------QPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIV 58
          M  SPKSPE G  G         + SSSLM+SLLGLLR+R+IRGVNLAVRDVRSSDPYIV
Sbjct: 1  MGDSPKSPESGSGGGGGGSSGGGRCSSSLMESLLGLLRIRIIRGVNLAVRDVRSSDPYIV 60

[Close]

BLAST of Cp4.1LG20g01460 vs. TAIR 10
Match: AT3G17980.1 (Calcium-dependent lipid-binding (CaLB domain) family protein )

HSP 1 Score: 67.4 bits (163), Expect = 5.3e-12
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 18 SSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 59
          +SSLMD LLGLLR+R+ RGVNLAVRD+ SSDPY+VVKM KQ
Sbjct: 9  TSSLMDDLLGLLRIRIKRGVNLAVRDISSSDPYVVVKMGKQ 49

[Close]

BLAST of Cp4.1LG20g01460 vs. TAIR 10
Match: AT1G48590.1 (Calcium-dependent lipid-binding (CaLB domain) family protein )

HSP 1 Score: 67.0 bits (162), Expect = 6.9e-12
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 20 SLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 59
          SLMDSLLGLLR+R+ RGVNLAVRD+ SSDPY+VVKM+KQ
Sbjct: 4  SLMDSLLGLLRIRIKRGVNLAVRDLNSSDPYVVVKMAKQ 42

[Close]

BLAST of Cp4.1LG20g01460 vs. TAIR 10
Match: AT1G48590.2 (Calcium-dependent lipid-binding (CaLB domain) family protein )

HSP 1 Score: 67.0 bits (162), Expect = 6.9e-12
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 20 SLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 59
          SLMDSLLGLLR+R+ RGVNLAVRD+ SSDPY+VVKM+KQ
Sbjct: 35 SLMDSLLGLLRIRIKRGVNLAVRDLNSSDPYVVVKMAKQ 73

[Close]

BLAST of Cp4.1LG20g01460 vs. TAIR 10
Match: AT1G48590.3 (Calcium-dependent lipid-binding (CaLB domain) family protein )

HSP 1 Score: 67.0 bits (162), Expect = 6.9e-12
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 20 SLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 59
          SLMDSLLGLLR+R+ RGVNLAVRD+ SSDPY+VVKM+KQ
Sbjct: 35 SLMDSLLGLLRIRIKRGVNLAVRDLNSSDPYVVVKMAKQ 73

[Close]

BLAST of Cp4.1LG20g01460 vs. TAIR 10
Match: AT1G73580.1 (Calcium-dependent lipid-binding (CaLB domain) family protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 20 SLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQ 59
          SLMD+LLG+LRVRV RGVNLAVRDV SSDPY+V+K+ +Q
Sbjct: 2  SLMDNLLGILRVRVQRGVNLAVRDVSSSDPYVVLKLGRQ 40

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g01460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVH4	7.5e-11	78.05	Protein C2-DOMAIN ABA-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=CAR4 PE=1 SV=...	[more]
Q9LP65	9.7e-11	82.05	Protein C2-DOMAIN ABA-RELATED 5 OS=Arabidopsis thaliana OX=3702 GN=CAR5 PE=2 SV=...	[more]
Q9C6B7	1.8e-09	76.92	Protein C2-DOMAIN ABA-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=CAR3 PE=3 SV=...	[more]
A2X479	2.7e-08	65.79	GTPase activating protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_07012 ...	[more]
Q6YWF1	2.7e-08	65.79	GTPase activating protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GAP1 PE=...	[more]

BLAST of Cp4.1LG20g01460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923777.1	1.03e-28	100.00	protein C2-DOMAIN ABA-RELATED 4-like [Cucurbita moschata]	[more]
XP_023520191.1	1.03e-28	100.00	protein C2-DOMAIN ABA-RELATED 4-like [Cucurbita pepo subsp. pepo]	[more]
KAG6584318.1	4.36e-27	96.55	Protein C2-DOMAIN ABA-RELATED 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7019910.1	3.90e-26	96.55	Protein C2-DOMAIN ABA-RELATED 4, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
KAG7012152.1	2.36e-20	81.82	Protein C2-DOMAIN ABA-RELATED 4, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]

BLAST of Cp4.1LG20g01460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E733	4.97e-29	100.00	protein C2-DOMAIN ABA-RELATED 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114313...	[more]
A0A1S4DT23	2.24e-18	71.21	protein C2-DOMAIN ABA-RELATED 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LVV8	4.21e-18	75.81	C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042830 PE=3 SV=...	[more]
A0A5D3BIY4	4.58e-18	71.21	Protein C2-DOMAIN ABA-RELATED 4-like isoform X1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CLZ2	4.58e-18	71.21	protein C2-DOMAIN ABA-RELATED 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Cp4.1LG20g01460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17980.1	5.3e-12	78.05	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]
AT1G48590.1	6.9e-12	82.05	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]
AT1G48590.2	6.9e-12	82.05	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]
AT1G48590.3	6.9e-12	82.05	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]
AT1G73580.1	1.3e-10	76.92	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035892	C2 domain superfamily	GENE3D	2.60.40.150	C2 domain	coord: 14..70 e-value: 2.8E-5 score: 26.0
IPR035892	C2 domain superfamily	SUPERFAMILY	49562	C2 domain (Calcium/lipid-binding domain, CaLB)	coord: 23..69
None	No IPR available	PANTHER	PTHR45933:SF26	PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE	coord: 14..58
IPR044562	Protein C2-DOMAIN ABA-RELATED	PANTHER	PTHR45933	PROTEIN C2-DOMAIN ABA-RELATED 4	coord: 14..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g01460.1	Cp4.1LG20g01460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009738	abscisic acid-activated signaling pathway
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane