Cp4.1LG20g01330 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG20g01330
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRibosomal protein S24/S35, mitochondrial
LocationCp4.1LG20: 757034 .. 758513 (-)
RNA-Seq ExpressionCp4.1LG20g01330
SyntenyCp4.1LG20g01330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCGGTCATAAACCCCGAAGAAAATGGGGATAAACCCTAGAACTGCTAAGGAACGCCATGAAACGAGCTATATGGGGAGCTGTCTTCACTGTCTGTTCTCGGAGGGTTTCCATCTCTCCTCTGCTTCAAACCTTGCGCTCTGGTCCATTACTACCTCCATTTTCCGTTTCGATTGCGTCCCAATCGCGATGTTACTCGACCGGGAATGACAAGTACAATGGATTGAACTCAACAACGATTGAAAACAAGGATTCTCTCGTCGACGATGATGTCAGTAACGAAGGTAAAATATAGTTGAATGCTGTTTGTCAAAGTTCTCTGTGTTTTCTTTCTAGGAAAAGATTTTTCAAATAGATTTAATTATATTCTCGTATTTCTAAGCATGGATCATCTTCTATCGTATTATATTTATATTTGCTTTCTGCGGTTTAATAGTTTGAGTTCTTGTAATATTAGTATAACATAGTAGTTACCTATGAAATTTTGAATGATATCCTCCTCCTATGTATAAGTTGTTTAATACTGGAAATTTTAGATAAGATGTGTTCAGAATCGTTGTTAAAGAAACTAATTAACAACAAGTGCAATAAAATTTCATTTTGTTTTGTTGGTTCTAATGTATGTTGAAACTGCTCTTAATCAAATTAGAGATAAGTTTTGAATAATCAATATTTCGAGAATGATGTGAAAATAATTGCTACTACAAAGCAATTAAGTGAAAGAAGAGTATAAAGATCAGCGAGAGAAAGCGATTAGTGAAGTATTTTAACCATTTCATGATTAAGGGAGCCTTGATTGACCCCCAAAGTTGTGTAAAGAGCTTGGTATTTCTGGATTGCTCACATTGACATGAAGTTCATTTGCAACTCTGTTCATTTTTTTTTGTAGTATGATTAATTTATTTTTAAAAGGCAATGAAAGCAATAGATACACTCAGATTCGATCTTAGACAGTAAGTTTTTTGTGATTACAGAGCTGAAGAGGAAAATTGATAGATTTTACGAGGGTGACGTCGAGTCATTACCAACAATTTTTGAAGCAATTTTGAAGAGGAAGCTATCAGGTAAGCACGGAGATGCTGATGATGAGCTGATGAAGGAAATTCGGCAGCGAATGCCTGGAGAAGTTGAGGATTTTAAAGATGAAGAGTATGATTCAGATTTAAGTGGTGAGTTGAATGAAACTGATGAAGAAATGGAGGAGGATCCCAGTGAGGAAGAAGATAGAAGAGTATAAGTTAATGTTAGATCATACATTTTTGGGTGAAAATGGTCAAATTTTGATAGCTTATTCAGGTTGGTCTATGGGAACCTAAACTCCAAACTTGGTGAACTTTGTTACATGGGGAATTGTATGCTTTATGTCTTTTAATGCCAATATTTGCAATAATGTATTATTGTAGAATGATTGTGGGGATGTGAGATGTATTATTGTAGCTTCATAACATTATTTTTTCACCGATGTTATCCTCGCCACCTCC

mRNA sequence

TCCGGTCATAAACCCCGAAGAAAATGGGGATAAACCCTAGAACTGCTAAGGAACGCCATGAAACGAGCTATATGGGGAGCTGTCTTCACTGTCTGTTCTCGGAGGGTTTCCATCTCTCCTCTGCTTCAAACCTTGCGCTCTGGTCCATTACTACCTCCATTTTCCGTTTCGATTGCGTCCCAATCGCGATGTTACTCGACCGGGAATGACAAGTACAATGGATTGAACTCAACAACGATTGAAAACAAGGATTCTCTCGTCGACGATGATGTCAGTAACGAAGAGCTGAAGAGGAAAATTGATAGATTTTACGAGGGTGACGTCGAGTCATTACCAACAATTTTTGAAGCAATTTTGAAGAGGAAGCTATCAGGTAAGCACGGAGATGCTGATGATGAGCTGATGAAGGAAATTCGGCAGCGAATGCCTGGAGAAGTTGAGGATTTTAAAGATGAAGAGTATGATTCAGATTTAAGTGGTGAGTTGAATGAAACTGATGAAGAAATGGAGGAGGATCCCAGTGAGGAAGAAGATAGAAGAGTATAAGTTAATGTTAGATCATACATTTTTGGGTGAAAATGGTCAAATTTTGATAGCTTATTCAGGTTGGTCTATGGGAACCTAAACTCCAAACTTGGTGAACTTTGTTACATGGGGAATTGTATGCTTTATGTCTTTTAATGCCAATATTTGCAATAATGTATTATTGTAGAATGATTGTGGGGATGTGAGATGTATTATTGTAGCTTCATAACATTATTTTTTCACCGATGTTATCCTCGCCACCTCC

Coding sequence (CDS)

ATGAAACGAGCTATATGGGGAGCTGTCTTCACTGTCTGTTCTCGGAGGGTTTCCATCTCTCCTCTGCTTCAAACCTTGCGCTCTGGTCCATTACTACCTCCATTTTCCGTTTCGATTGCGTCCCAATCGCGATGTTACTCGACCGGGAATGACAAGTACAATGGATTGAACTCAACAACGATTGAAAACAAGGATTCTCTCGTCGACGATGATGTCAGTAACGAAGAGCTGAAGAGGAAAATTGATAGATTTTACGAGGGTGACGTCGAGTCATTACCAACAATTTTTGAAGCAATTTTGAAGAGGAAGCTATCAGGTAAGCACGGAGATGCTGATGATGAGCTGATGAAGGAAATTCGGCAGCGAATGCCTGGAGAAGTTGAGGATTTTAAAGATGAAGAGTATGATTCAGATTTAAGTGGTGAGTTGAATGAAACTGATGAAGAAATGGAGGAGGATCCCAGTGAGGAAGAAGATAGAAGAGTATAA

Protein sequence

MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIRQRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPSEEEDRRV
Homology
[Close]
BLAST of Cp4.1LG20g01330 vs. NCBI nr
Match: XP_023519890.1 (uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308 bits (790), Expect = 1.41e-105
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 

Query: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60
           MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120
           IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPSEEEDRRV 162
           QRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPSEEEDRRV
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPSEEEDRRV 162

[Close]
BLAST of Cp4.1LG20g01330 vs. NCBI nr
Match: XP_022924024.1 (uncharacterized protein LOC111431572 [Cucurbita moschata])

HSP 1 Score: 293 bits (751), Expect = 1.25e-99
Identity = 154/162 (95.06%), Postives = 159/162 (98.15%), Query Frame = 0 

Query: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60
           MKRAIWGAVFT CSRRVSISPLLQTLRSGPLLP FSVSI+SQSRCYS+GNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120
           IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPSEEEDRRV 162
           QR+PGEVEDFKDEEYDSDLSGELNE+DEEM+ED SEEEDRRV
Sbjct: 121 QRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162

[Close]
BLAST of Cp4.1LG20g01330 vs. NCBI nr
Match: KAG7019929.1 (hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290 bits (743), Expect = 2.07e-98
Identity = 151/162 (93.21%), Postives = 157/162 (96.91%), Query Frame = 0 

Query: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60
           MKRAIWGAVF  CSRRVSISPLLQTLRSGPLLP FSVSI+SQSRCYS+GNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120
           IENKDSLVDDD+SNEELKRKIDRFYEGD+ESLP IFEAILKRKLSGKHGDADDELMKEIR
Sbjct: 61  IENKDSLVDDDISNEELKRKIDRFYEGDIESLPAIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPSEEEDRRV 162
           QRMPGEVEDFKDEEYDSDLSGELNE+DEEM+ED SEEEDRRV
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162

[Close]
BLAST of Cp4.1LG20g01330 vs. NCBI nr
Match: KAG6584340.1 (hypothetical protein SDJN03_20272, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289 bits (740), Expect = 5.92e-98
Identity = 151/162 (93.21%), Postives = 157/162 (96.91%), Query Frame = 0 

Query: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60
           MKRAIWGAVF  CSRRVSISPLLQTLRSGPLLP FSVSI+SQSRCYS+GNDKYNGLNST+
Sbjct: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS 60

Query: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120
           IENKDSLVDDD+SNEELKRKIDRFYEGDVESLP IFEAILKRKLSGKHGDADDELMKEIR
Sbjct: 61  IENKDSLVDDDISNEELKRKIDRFYEGDVESLPAIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPSEEEDRRV 162
           QRMPGEVEDFKDEEYDSDLSGELNE+DEEM+ED SEEEDRRV
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162

[Close]
BLAST of Cp4.1LG20g01330 vs. NCBI nr
Match: XP_023000953.1 (uncharacterized protein LOC111495236 [Cucurbita maxima])

HSP 1 Score: 286 bits (732), Expect = 9.17e-97
Identity = 151/160 (94.38%), Postives = 154/160 (96.25%), Query Frame = 0 

Query: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60
           MKRAIWGAVF  CSRRVSI PLLQTLRSGPLLPPFSVSI+SQSRCYS+GNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120
           IENKDSLVDD VSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEI 
Sbjct: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPSEEEDR 160
           QRMPGEVEDFKDEEYDSDLSG+LNETDEEMEED SEEEDR
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR 160

[Close]
BLAST of Cp4.1LG20g01330 vs. ExPASy TrEMBL
Match: A0A6J1E804 (uncharacterized protein LOC111431572 OS=Cucurbita moschata OX=3662 GN=LOC111431572 PE=4 SV=1)

HSP 1 Score: 293 bits (751), Expect = 6.03e-100
Identity = 154/162 (95.06%), Postives = 159/162 (98.15%), Query Frame = 0 

Query: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60
           MKRAIWGAVFT CSRRVSISPLLQTLRSGPLLP FSVSI+SQSRCYS+GNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120
           IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPSEEEDRRV 162
           QR+PGEVEDFKDEEYDSDLSGELNE+DEEM+ED SEEEDRRV
Sbjct: 121 QRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 162

[Close]
BLAST of Cp4.1LG20g01330 vs. ExPASy TrEMBL
Match: A0A6J1KP40 (uncharacterized protein LOC111495236 OS=Cucurbita maxima OX=3661 GN=LOC111495236 PE=4 SV=1)

HSP 1 Score: 286 bits (732), Expect = 4.44e-97
Identity = 151/160 (94.38%), Postives = 154/160 (96.25%), Query Frame = 0 

Query: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60
           MKRAIWGAVF  CSRRVSI PLLQTLRSGPLLPPFSVSI+SQSRCYS+GNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120
           IENKDSLVDD VSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEI 
Sbjct: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPSEEEDR 160
           QRMPGEVEDFKDEEYDSDLSG+LNETDEEMEED SEEEDR
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR 160

[Close]
BLAST of Cp4.1LG20g01330 vs. ExPASy TrEMBL
Match: A0A5D3BIA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002170 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 1.04e-63
Identity = 115/163 (70.55%), Postives = 129/163 (79.14%), Query Frame = 0 

Query: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60
           MKRA+WGAVF VCSR +S+SP L+T RS PLL PFSV      RCYS+GNDKYN LNST 
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSVFTL---RCYSSGNDKYNELNST- 60

Query: 61  IENKDSLVDDDVSNEELKRKIDRFYEG-DVESLPTIFEAILKRKLSGKHGDADDELMKEI 120
            +NKDSLVDDDVS EELKRKID+FYEG D +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILKRKLSGKHEDADDELMKEI 120

Query: 121 RQRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPSEEEDRRV 162
           RQRMPGE+EDFK EEYDS+L+ +            SEEED+R+
Sbjct: 121 RQRMPGEIEDFKGEEYDSELTDDAASD--------SEEEDKRI 150

[Close]
BLAST of Cp4.1LG20g01330 vs. ExPASy TrEMBL
Match: A0A1S3CEX3 (uncharacterized protein LOC103499929 OS=Cucumis melo OX=3656 GN=LOC103499929 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 1.04e-63
Identity = 115/163 (70.55%), Postives = 129/163 (79.14%), Query Frame = 0 

Query: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60
           MKRA+WGAVF VCSR +S+SP L+T RS PLL PFSV      RCYS+GNDKYN LNST 
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSVFTL---RCYSSGNDKYNELNST- 60

Query: 61  IENKDSLVDDDVSNEELKRKIDRFYEG-DVESLPTIFEAILKRKLSGKHGDADDELMKEI 120
            +NKDSLVDDDVS EELKRKID+FYEG D +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILKRKLSGKHEDADDELMKEI 120

Query: 121 RQRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPSEEEDRRV 162
           RQRMPGE+EDFK EEYDS+L+ +            SEEED+R+
Sbjct: 121 RQRMPGEIEDFKGEEYDSELTDDAASD--------SEEEDKRI 150

[Close]
BLAST of Cp4.1LG20g01330 vs. ExPASy TrEMBL
Match: A0A6J1C5J6 (uncharacterized protein LOC111008596 OS=Momordica charantia OX=3673 GN=LOC111008596 PE=4 SV=1)

HSP 1 Score: 193 bits (491), Expect = 2.82e-60
Identity = 113/167 (67.66%), Postives = 129/167 (77.25%), Query Frame = 0 

Query: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60
           M RA+W AVF V +R VSISP LQT  SG     F+V  + Q RCYS+ NDKYNGLNSTT
Sbjct: 1   MNRALWRAVFNVYARSVSISPPLQTPCSGHFPARFAVLASLQPRCYSSKNDKYNGLNSTT 60

Query: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120
            +N  S+VDDDVS EELKRKID+FYEGDVESLP+IFEAILKRKLSGKH  ADDELMKEIR
Sbjct: 61  NQNDHSVVDDDVSTEELKRKIDKFYEGDVESLPSIFEAILKRKLSGKHEGADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGELNETDEEMEE-------DPSEEEDR 160
           QRMPG++EDFKD+E  SDL+G   ETDEE+++         SEEEDR
Sbjct: 121 QRMPGQMEDFKDDECASDLNG-FEETDEEIDDFSHARDSSDSEEEDR 166

[Close]
BLAST of Cp4.1LG20g01330 vs. TAIR 10
Match: AT3G18240.1 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 57/153 (37.25%), Postives = 97/153 (63.40%), Query Frame = 0 

Query: 11  TVCSRRVSISPLL--QTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTTI------- 70
           ++C+RR+ +SP +  Q   + P L P +   A + R +S+     +G NSTT        
Sbjct: 10  SLCARRIILSPRITHQISPNVPFLAPIAAPAAPKFRFFSS----ESGENSTTAPESSPTD 69

Query: 71  -ENKDSLVDDDVSNEELKRKIDRFY-EGDVESLPTIFEAILKRKLSGKHGDADDELMKEI 130
              K  LV +DVSN+ELK +I++++ EG+ ++LP + EA+L+R+L  KH + DDEL+++I
Sbjct: 70  SPEKKDLVVEDVSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEKI 129

Query: 131 RQRMPGEVEDFKDEEYDSDLSGELNETDEEMEE 153
            + +P + +D KDE+++SD   E + TDEE+E+
Sbjct: 130 -ESLPFK-DDVKDEDFESDFE-EAHSTDEELED 155

[Close]
BLAST of Cp4.1LG20g01330 vs. TAIR 10
Match: AT3G18240.2 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 57/153 (37.25%), Postives = 97/153 (63.40%), Query Frame = 0 

Query: 11  TVCSRRVSISPLL--QTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTTI------- 70
           ++C+RR+ +SP +  Q   + P L P +   A + R +S+     +G NSTT        
Sbjct: 10  SLCARRIILSPRITHQISPNVPFLAPIAAPAAPKFRFFSS----ESGENSTTAPESSPTD 69

Query: 71  -ENKDSLVDDDVSNEELKRKIDRFY-EGDVESLPTIFEAILKRKLSGKHGDADDELMKEI 130
              K  LV +DVSN+ELK +I++++ EG+ ++LP + EA+L+R+L  KH + DDEL+++I
Sbjct: 70  SPEKKDLVVEDVSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEKI 129

Query: 131 RQRMPGEVEDFKDEEYDSDLSGELNETDEEMEE 153
            + +P + +D KDE+++SD   E + TDEE+E+
Sbjct: 130 -ESLPFK-DDVKDEDFESDFE-EAHSTDEELED 155

[Close]
BLAST of Cp4.1LG20g01330 vs. TAIR 10
Match: AT4G21460.1 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 78.2 bits (191), Expect = 6.8e-15
Identity = 60/158 (37.97%), Postives = 98/158 (62.03%), Query Frame = 0 

Query: 7   GAVF---TVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTTI-- 66
           GA+F   ++C+RR+ +S  +    + P L P +     + R +S+     +G NSTT   
Sbjct: 3   GALFRNASLCARRIILSSRISP--NVPFLTPIAAPAPPKFRFFSS----ESGENSTTATE 62

Query: 67  ------ENKDSLVDDDVSNEELKRKIDR-FYEGDVESLPTIFEAILKRKLSGKHGDADDE 126
                  +K  LV +DVSN+ELK +ID+ F EG+ ++LP + EA+L+R+L  KH + DDE
Sbjct: 63  SSPTDSSDKKDLVVEDVSNKELKSRIDKSFNEGNEDALPGVIEALLQRRLVDKHAETDDE 122

Query: 127 LMKEIRQRMPGEVEDFKDEEYDSDLSGELNETDEEMEE 153
           LM++I + +P + +D KDE+++SD   E + TDEE+E+
Sbjct: 123 LMEKI-ESLPFK-DDVKDEDFESDFE-EAHSTDEELED 151

[Close]
BLAST of Cp4.1LG20g01330 vs. TAIR 10
Match: AT1G73770.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Ribosomal protein S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 951 Blast hits to 569 proteins in 87 species: Archae - 0; Bacteria - 746; Metazoa - 33; Fungi - 46; Plants - 57; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 4.0e-07
Identity = 32/92 (34.78%), Postives = 57/92 (61.96%), Query Frame = 0 

Query: 69  DDDVSNEELKRKIDRFY-EGDVESLPTIFEAILKRKLSGKHGDADDELMKEIRQRMPGEV 128
           ++ +S EELK++I  F  +G+ +++P +FEA++ RKLSGKH D+DDE+M  +R+    + 
Sbjct: 61  EEVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEVMDVVRKYPVNDA 120

Query: 129 EDFKDEEYDSDLSGELNETDEEMEEDPSEEED 160
               D + D +  G  + +D ++E D   + D
Sbjct: 121 HKVDDIDSDIESDGHGDSSDSDIESDDLRDGD 152

[Close]
BLAST of Cp4.1LG20g01330 vs. TAIR 10
Match: AT1G73770.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Ribosomal protein S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 4.0e-07
Identity = 32/92 (34.78%), Postives = 57/92 (61.96%), Query Frame = 0 

Query: 69  DDDVSNEELKRKIDRFY-EGDVESLPTIFEAILKRKLSGKHGDADDELMKEIRQRMPGEV 128
           ++ +S EELK++I  F  +G+ +++P +FEA++ RKLSGKH D+DDE+M  +R+    + 
Sbjct: 61  EEVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEVMDVVRKYPVNDA 120

Query: 129 EDFKDEEYDSDLSGELNETDEEMEEDPSEEED 160
               D + D +  G  + +D ++E D   + D
Sbjct: 121 HKVDDIDSDIESDGHGDSSDSDIESDDLRDGD 152

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g01330 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g01330 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023519890.11.41e-105100.00uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo][more]
XP_022924024.11.25e-9995.06uncharacterized protein LOC111431572 [Cucurbita moschata][more]
KAG7019929.12.07e-9893.21hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6584340.15.92e-9893.21hypothetical protein SDJN03_20272, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023000953.19.17e-9794.38uncharacterized protein LOC111495236 [Cucurbita maxima][more]
BLAST of Cp4.1LG20g01330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E8046.03e-10095.06uncharacterized protein LOC111431572 OS=Cucurbita moschata OX=3662 GN=LOC1114315... [more]
A0A6J1KP404.44e-9794.38uncharacterized protein LOC111495236 OS=Cucurbita maxima OX=3661 GN=LOC111495236... [more]
A0A5D3BIA41.04e-6370.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CEX31.04e-6370.55uncharacterized protein LOC103499929 OS=Cucumis melo OX=3656 GN=LOC103499929 PE=... [more]
A0A6J1C5J62.82e-6067.66uncharacterized protein LOC111008596 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
BLAST of Cp4.1LG20g01330 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G18240.13.1e-1537.25Ribosomal protein S24/S35, mitochondrial [more]
AT3G18240.23.1e-1537.25Ribosomal protein S24/S35, mitochondrial [more]
AT4G21460.16.8e-1537.97Ribosomal protein S24/S35, mitochondrial [more]
AT1G73770.14.0e-0734.78FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G73770.24.0e-0734.78FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g01330.1Cp4.1LG20g01330.1mRNA