Cp4.1LG20g00880 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG20g00880
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionCleavage stimulation factor 50 kDa subunit
LocationCp4.1LG20: 455233 .. 460873 (-)
RNA-Seq ExpressionCp4.1LG20g00880
SyntenyCp4.1LG20g00880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGTTAGGGTGGTGAGCTGAGAGAACTGTGGTGTTTGTGTTGTTTGATACAAGATGGAAGGCGGCTTCGAACAGACCCTTCAAGATGGAAAACTTTATAGACAAGTCAATTCTCTCATTGTTGCTCATCTTCGCGATCACAACCTTACCCAGGCAAGCTTTTCTCTTCAAGCTTTTGATTATTTAACATCTGGGTCACCTCATTTCAGATTTTGTTTATCGAGTTTGGTCTCTGTTTCGATTTGCTTAGAGATTGAAGTTTTCAAATGGGAGTAATTTTGAGTTCATACTTGAGGGAATAAAATGATAATAAGTATATAACTATGTCGCATAGGCTGCAAGTGCTGCTGCTTCAGCTTCAAGGACACCGCTGAATGTTGATGTTCCGCCTAATAAGCTTATGGAGCTCGTTGCAAAGGTCTGAATTTGCTTTGTAGAATCTTTTTGTTTTAAGTCTTTGTGAGTTTGGGGTTGCTTAGTGGACGTTTCTGTATTAAGATGATACCAGGGTCTTGCGGTGGAGAAAGAGGAGATGTTAAGAGGGAGTCCTGCTTCTGCATTGTACGAATTTGGTTCATCAGTGCCCTCTACATTTGGGTCTACACAGCCCTCTCGTGCTTCTACCATCGACTTTAGGTTGTAAAGCTTTTTCCATATTGGTTGTAGTATTGCAGTTTCATATGTAGGACTTGTGGAAAAGCAGAGGTAATCCAACAGCCTTCTTGTGTTTCTTCTTCTTTTTGTTTCCTCCATACAGCACTGTGCAGGATACAAAAGGTTCGTCGAAGAATTTTCCAAAGCACGAGACTCGACATCTTTCCGAGCATAAGGTGATTAAACTTCACGCAATACTTTTCTTGTATAATGTCAAGACTAGTGTAGAGGAGGAATGGATTTTCATGGTCTGAAAGTTTTTACTTCTTGTGAGGTTTGGCATTGGAAAGGATCATTTTGAGAGAGTATAACGGCCCAACCACATTGCTAGTAGATATTGTTCTCTTTAGGCTTTCCCTTTCGGGCTTTCCTTCAAGGTTTTAAAACGCATCTTGCTAGGAAGAGGTTTTCACACTCTTATAAAGAATGCTTCGTTCTCCTCCCCAACTGATGTGGGGTCTCACAATCCACCCCCCTTCGGGGCCCAACGTCCTCAGTAGCACTCTTTCCCTCTTCCAATCGATGTGGGACCCCCTAATCCACCCCCCTTCAGTGTCTAGCGTCCTTGCTGACACATCGCCTTGTGTCCACCCCCTTTGGGGCTCATCCTCCTTGCTGGTACATCGCCCGATGTCTGGTTCTGATACCATTTGTAACGGCTCAAGCCCACCACAACAGATTTTGTCCTATTTGGACTTTCCCTTTGGGGCTTCTCTTCAAGGTTTTTAAAACATGTCTGCTAGGAGAGGTTTTCACACCCTTATAAAGAATACTTCGTTCTCCTCCCCACCAATGTGGGATCTTAGAGATAGAGAGAGAGCCCTCTTTATAGGTTGCCACCCTTGTGCTTGTATTATATTTGTAGCTTTGCCTTATTTTGCTGGATAGATCCTACTCATTATGACATGAATATTGTGCTGGGGGAATAGATTTTCTTTATTGTCATCTTTGATTCATATGTTTATGCTTGGCTGAGTTTGATTATTGTATCTTCATGCTGGGATGATGGCTTAAACTCGTCCAGAATGTTGCCAGATGTGCAAGGTTCAGCGCTGACGGGAGATTTGTTGCCACAGGAAGCGCGGATATGTCGATAAAGCTGTTTGAGGTATTCGTGCTTTTTCTTCAAGTTATTTAATGGGATACTATAATCAACTCGAGATCTGAGTAACAAGCCATTTTTCTTTATAAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATTCCAAAGATGGTCCTGTCCGACCTGTTATAAGGACGTTTTACGATCACATTCAAGTTAGTTCATCACATTCATGAAACACATTTGTGCTGTGTTGATAGTTTTTTGTTCTCCATTGATGACTAATTCCTCTAGTAATTAATTGCAGCCAATAAATGATTTGGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCAGACTATAAAGTATGGTTCTTTGTTGATCCATTTTTACCTGATATCCTTTGCACAAGATCAGTTGTATTAATTCATTTACCATTACCTAATGCTTTGTTTTCCAGGTTCTTTGACTTCTCCAAATTGACTGCTAAGAAAGCATTCAGAGTTATCCAGGTTTTGCTTGTGTCTTATTCTACATTTGGCTGCAGCTTTTACTTCTTTTACTTCAGAAAGCACTCTCTTGAATTCTTCCTTCTACCTCTGTTTGTCATTAAGGATACCCATAACGTGCGTTCGATATCGCTTCATCCTTCAGGAGATTATCTTTTAGCGGGTATCGTCTTCCTCCTTTTCATTATGTAGTTGTTATTTGTTAGTTGAAATGAAATTAAATTGCAGTATAAACTTGAGTTCTTAACCAAGCTTTCTGCCTATTTCTGACGTTGTTCTTTGCTAATTAAATGAACATATACATGTACCCCTCCATGACCTTTTTTCCCTCTTCTTTTAAGAAAAGTCATACATTGCAATAGAGGGCTAGTTAAGCAAGCTATCCACCTACCAAAGTCATCTGCTCGGGTTTGGCTTTGTTTTTGTAAATGACTACTAGTAGATATTGTCCTCTTTGGGCTTTCCTTCTAGGCTTCCTCTTAAGGTTTTAAAATGCGTCTGCTAGGGAGAGGTTTCCACACCTTTATAAAGAATGTTTCGTTCTCTTCTCCAACCAATGTGGGATCTCACAATCCATCCCCTTGGAGGCCCAACATTCTCACTGGCACACCGCTCGATGTCTAGCTCTTATAACATTTGTAACAGCCCAAGCCCACCGCTAGTAGATATTGTCCTCTTTGGGCTTTCCCTTCCGAACTTTCCCTCAAGGTTTTAAAACACGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGCTTTGTTCTCCTTTCCAACCAATGTGGGATCTCACAACCTCACTGACACACCGCCCAATGTCTGGCTCTGATACCATTTGTAACAACCCAAGTCCACCGCTAGCAAATATTGTTCTCTTTGGGTTTTCCCTTTCGAGTTTCCCCTCAAGGTTTTAAAACGCATTAGCTAGGAAGAGGTTTTCACACACTTATAAGGAATGTTTCGTTTTTCTCTCCAATCAACGTGGGATCTCACAAGAGAGAGGATTGAATGAACCTTGTCCTTTTCTTATTAAGTAGTAATATGACAGAGTGCTTATTATGTAGAGATTAATTACAACAAAACTAGCTAGTTCCAATAGCCCTCAGTCCTACTGCTACTTTCTCTGTGCGAGTTTTGACCACCACTAGCTGATCTTTGGACCTAAAGTTAATGAAACAAAATAAGAAGAGACCTCGTTTTTACATTAGTCACTGACGTGGGTGAACGCTTCAGGAACGGATCATCCAATTGCCCACCTGTATGATGTCAATACTTTTCAGTGCTTTCTTTCTGCAAATGTTCCAGAAATAGGAAATAGCGGAGCCATAAATCAGGTGCTATGAACTTCATTTTTCAAATTATCCACAATCCAAATCCTATGAGTTGTTCATGGAGCTCTCACAGTTCATTCTTAATGATTATACAGGTCAGGTACTCAGCAACAGGCAGTATGTATGTCACTGCTTCAAAAGACGGTGCAGTTCGTTTATGGGATGGCGTTAGTGCGAAATGTCTTCGCTCCATTGTTAGTGCACACGGTACAGCGGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTAAGCTTGTTAGATCTCTTGAACAACTTTATCAAGCTAGCAATAATCATAATGGTTTCTCCAAGAACATGGAAGCTTTTGTTGAAATGTTACAGCAACCTTTCATTTAATCGATTGACTTCCATGCTATCGGCCAGAGTCGTACTCCACAGCTCTTAAAGAATATATTTGATCGTTTTATTGGTTACTCAATCGTCGATATCTCAGGTACGTTCTTTCTTGTGGAAAGGACTCGACTGTAAAGCTCTGGGACGTGGGGACGGGAAAACTGGTCAAACAATATGTTGGAGCTACTCATATGCAATTGAGGTGTCAGGTCTGGTTTCGTTTCTAACTTGTTTTCACTTTGAAGAGTTACCCATATTACAGGAACTGAATCTGGATGTGTTTCAAAACCTTTTAGCTCCCTAATCTGGCCTAGTAGTCAATAAGGGCCGTGAAAATAATAGTGTTTAGAGGGTATGTGTAACTATCCAAGCCCACCGCTAGTAGATATTGTCCTCTTTGGGCTTTCTCTTTCGAGCTTCCTCTCAAGGTTTTTAAAACGCGTCTACTAGGGAGAGGTTTCCACACCCTTGTAAAGAATGTTTCGTTCTCCTCCCCAACCGAGTTGGGATCTCACAATTCACCCCTTTTGGGGCCCAATGTCCTCGTTAGCACTCGTTCCCTTCTCTAATCAACATGGGACACTACCTTGTGTCCACCCCCTTCAAGTTTAGCCTCTTCGTCGGCACATCACCCAGTGTCTGGCTTTGATACCATTTGTAACTACCCAAGCCCACTGCTAACAAATATTGTCCTTTTTGGATTTTTCCTTTCGGGTTTTCCCTCAAGCTTTTTAAAATGTGTTTGCTAGGGAGAGGTTTCTACACCCTTATAAAGAATGTTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAATATGGGTTCAAACCATGATAGCCACCTATTTGGGTTTGCTAAGCAATTGTCTTGCACAAGTTAACCAAGACACTCACTACACACTAACTTTCATAAATCAAGCTCAAACTTTTTAACCCCCGAACGTCCCTAAGCTTATTATAACAAAGAGCCAAGTTTCTCTTAGGAAATATTCAAAGCTGTTAATAATTCCATCTGACAGTTTCAAAACTTTTTTCTCATCAGGCTGTGTTCAATGATAACGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAACGAGGTCGACCCTGCTTCTTGTTTTCACTTCTCAGAGCTGTGACATTCATGTTTTGAATCTGAAATTGATAAGAGATTTGAATGTTTGCAGATTGTTATCTGGGATGCTCTGACAGCAGAGCGAGTAGCAAGGTGGCCTTCGAACCACATCGGTCCACCCCGATGGCTCGAGCACTCACCAACAGAATCAGCCTTCATTTCGTGCGGGACTGATAAATCAATACGCTTTTGGAAGGAAACTCTCTAGTGAGTGCAGCAGGCTAGAAGATGAGAGCTGTTTCCTCAACCTGAAAATGTATGAGATGTAGCAATCTCTTGAGCCCTCTACCACAAATCTTAGCTTATATTTATTTCATTAATTATTGAGAAGAGATGGGCTCTCACTCTCCATATAAACTGTGGGCCAAAGCCCAATAAATCAGTGGGCTTTGACAATTGAATGGCCAAGGCCCAATTGTTTAAATTTGTACAACTCTCATGAAGGACATCTTAGTTATTGCCAAACCTTGGTTTAAACTATAAAAGCAAGTTTCAAGGGATCCATTACATTAAAACATGTTCTTATTTGGCATCTTATTGTCGGTCCAAAAAAAAAAAAAAAAAAAAAAAAAANAT

mRNA sequence

ATGCCGATGGAAGGCGGCTTCGAACAGACCCTTCAAGATGGAAAACTTTATAGACAAGCTGCAAGTGCTGCTGCTTCAGCTTCAAGGACACCGCTGAATGTTGATGTTCCGCCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCGGTGGAGAAAGAGGAGATGTTAAGAGGGAGTCCTGCTTCTGCATTGTACGAATTTGGTTCATCAGTGCCCTCTACATTTGGGTCTACACAGCCCTCTCGTGCTTCTACCATCGACTTTAGCACTGTGCAGGATACAAAAGGTTCGTCGAAGAATTTTCCAAAGCACGAGACTCGACATCTTTCCGAGCATAAGAATGTTGCCAGATGTGCAAGGTTCAGCGCTGACGGGAGATTTGTTGCCACAGGAAGCGCGGATATGTCGATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATTCCAAAGATGGTCCTGTCCGACCTGTTATAAGGACGTTTTACGATCACATTCAACCAATAAATGATTTGGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCAGACTATAAAGTTCTTTGACTTCTCCAAATTGACTGCTAAGAAAGCATTCAGAGTTATCCAGGTTTTGCTTGTGTCTTATTCTACATTTGGCTGCAGCTTTTACTTCTTTTACTTCAGAAAGCACTCTCTTGAATTCTTCCTTCTACCTCTGTTTGTCATTAAGGATACCCATAACGTGCGTTCGATATCGCTTCATCCTTCAGGAGATTATCTTTTAGCGGGAACGGATCATCCAATTGCCCACCTGTATGATGTCAATACTTTTCAGTGCTTTCTTTCTGCAAATGTTCCAGAAATAGGAAATAGCGGAGCCATAAATCAGGTCAGGTACTCAGCAACAGGCAGTATGTATGTCACTGCTTCAAAAGACGGTGCAGTTCGTTTATGGGATGGCGTTAGTGCGAAATGTCTTCGCTCCATTGTTAGTGCACACGGTACAGCGGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTACGTTCTTTCTTGTGGAAAGGACTCGACTGTAAAGCTCTGGGACGTGGGGACGGGAAAACTGGTCAAACAATATGTTGGAGCTACTCATATGCAATTGAGGTGTCAGGCTGTGTTCAATGATAACGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAACGAGATTGTTATCTGGGATGCTCTGACAGCAGAGCGAGTAGCAAGGTGGCCTTCGAACCACATCGGTCCACCCCGATGGCTCGAGCACTCACCAACAGAATCAGCCTTCATTTCGTGCGGGACTGATAAATCAATACGCTTTTGGAAGGAAACTCTCTAGTGAGTGCAGCAGGCTAGAAGATGAGAGCTGTTTCCTCAACCTGAAAATGTATGAGATGTAGCAATCTCTTGAGCCCTCTACCACAAATCTTAGCTTATATTTATTTCATTAATTATTGAGAAGAGATGGGCTCTCACTCTCCATATAAACTGTGGGCCAAAGCCCAATAAATCAGTGGGCTTTGACAATTGAATGGCCAAGGCCCAATTGTTTAAATTTGTACAACTCTCATGAAGGACATCTTAGTTATTGCCAAACCTTGGTTTAAACTATAAAAGCAAGTTTCAAGGGATCCATTACATTAAAACATGTTCTTATTTGGCATCTTATTGTCGGTCCAAAAAAAAAAAAAAAAAAAAAAAAAANAT

Coding sequence (CDS)

ATGCCGATGGAAGGCGGCTTCGAACAGACCCTTCAAGATGGAAAACTTTATAGACAAGCTGCAAGTGCTGCTGCTTCAGCTTCAAGGACACCGCTGAATGTTGATGTTCCGCCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCGGTGGAGAAAGAGGAGATGTTAAGAGGGAGTCCTGCTTCTGCATTGTACGAATTTGGTTCATCAGTGCCCTCTACATTTGGGTCTACACAGCCCTCTCGTGCTTCTACCATCGACTTTAGCACTGTGCAGGATACAAAAGGTTCGTCGAAGAATTTTCCAAAGCACGAGACTCGACATCTTTCCGAGCATAAGAATGTTGCCAGATGTGCAAGGTTCAGCGCTGACGGGAGATTTGTTGCCACAGGAAGCGCGGATATGTCGATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATTCCAAAGATGGTCCTGTCCGACCTGTTATAAGGACGTTTTACGATCACATTCAACCAATAAATGATTTGGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCAGACTATAAAGTTCTTTGACTTCTCCAAATTGACTGCTAAGAAAGCATTCAGAGTTATCCAGGTTTTGCTTGTGTCTTATTCTACATTTGGCTGCAGCTTTTACTTCTTTTACTTCAGAAAGCACTCTCTTGAATTCTTCCTTCTACCTCTGTTTGTCATTAAGGATACCCATAACGTGCGTTCGATATCGCTTCATCCTTCAGGAGATTATCTTTTAGCGGGAACGGATCATCCAATTGCCCACCTGTATGATGTCAATACTTTTCAGTGCTTTCTTTCTGCAAATGTTCCAGAAATAGGAAATAGCGGAGCCATAAATCAGGTCAGGTACTCAGCAACAGGCAGTATGTATGTCACTGCTTCAAAAGACGGTGCAGTTCGTTTATGGGATGGCGTTAGTGCGAAATGTCTTCGCTCCATTGTTAGTGCACACGGTACAGCGGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTACGTTCTTTCTTGTGGAAAGGACTCGACTGTAAAGCTCTGGGACGTGGGGACGGGAAAACTGGTCAAACAATATGTTGGAGCTACTCATATGCAATTGAGGTGTCAGGCTGTGTTCAATGATAACGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAACGAGATTGTTATCTGGGATGCTCTGACAGCAGAGCGAGTAGCAAGGTGGCCTTCGAACCACATCGGTCCACCCCGATGGCTCGAGCACTCACCAACAGAATCAGCCTTCATTTCGTGCGGGACTGATAAATCAATACGCTTTTGGAAGGAAACTCTCTAG

Protein sequence

MPMEGGFEQTLQDGKLYRQAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYSTFGCSFYFFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNEIVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
Homology
[Close]
BLAST of Cp4.1LG20g00880 vs. ExPASy Swiss-Prot
Match: Q8L4J2 (Cleavage stimulation factor subunit 50 OS=Arabidopsis thaliana OX=3702 GN=CSTF50 PE=1 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 6.9e-158
Identity = 283/473 (59.83%), Postives = 344/473 (72.73%), Query Frame = 0 

Query: 1   MPMEGGFEQTLQDGKLYR----------------QAASAAASASRTPLNVDVPPNKLMEL 60
           M   G  EQ LQDG ++R                Q ASA ASA+ TPLN++VPPN+L+EL
Sbjct: 1   MGNSGDLEQALQDGNIFRQLNALIVAHLRHHNLSQVASAVASATMTPLNIEVPPNRLLEL 60

Query: 61  VAKGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPK 120
           VAKGLA E    LRG  +S L      +PS++GS    R ++IDFS V   KGSSK  PK
Sbjct: 61  VAKGLAAENNGTLRGVSSSVL------LPSSYGSITTPRTASIDFS-VNHAKGSSKTIPK 120

Query: 121 HETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIR 180
           HE++ LSEHK+V RCARFS DG F ATG AD SIKLFEV K+KQM+   S D   RP+IR
Sbjct: 121 HESKTLSEHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVKQMI---SGDTQARPLIR 180

Query: 181 TFYDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYSTFGCS 240
           TFYDH +PINDLDFHP++T+LIS AKD  IKFFDFSK TAK+AF+V Q            
Sbjct: 181 TFYDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQ------------ 240

Query: 241 FYFFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFL 300
                                 DTHNVRSIS HPSG++LLAGTDHPI HLYDVNT+QCFL
Sbjct: 241 ----------------------DTHNVRSISFHPSGEFLLAGTDHPIPHLYDVNTYQCFL 300

Query: 301 SANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSA 360
            +N P+ G SGAINQVRYS+TGS+Y+TASKDGA+RL+DGVSAKC+RSI +AHG +E TSA
Sbjct: 301 PSNFPDSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSA 360

Query: 361 KFTKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPS 420
            FTKD+R+VLS GKDSTVKLW++G+G++VK+Y+GA  ++LR QA+FND EEFV+SIDE S
Sbjct: 361 VFTKDQRFVLSSGKDSTVKLWEIGSGRMVKEYLGAKRVKLRSQAIFNDTEEFVISIDEAS 420

Query: 421 NEIVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 458
           NE+V WDA TA++VA+WPSNH G PRW+EHSP ES F++CG D+SIRFWKE++
Sbjct: 421 NEVVTWDARTADKVAKWPSNHNGAPRWIEHSPVESVFVTCGIDRSIRFWKESV 429

[Close]
BLAST of Cp4.1LG20g00880 vs. ExPASy Swiss-Prot
Match: Q05048 (Cleavage stimulation factor subunit 1 OS=Homo sapiens OX=9606 GN=CSTF1 PE=1 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.5e-72
Identity = 159/435 (36.55%), Postives = 228/435 (52.41%), Query Frame = 0 

Query: 31  PLNVDVPPNKLMELVAKGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFS 90
           P +V  P  +L+ L+  G        +     +  Y  G S      +  P     ++F 
Sbjct: 40  PQSVCAPSEQLLHLIKLG--------MENDDTAVQYAIGRS-----DTVAPGTGIDLEFD 99

Query: 91  TVQDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAK----- 150
              D +  S    ++ET +++ HK   R A +S DG+ +ATGSAD SIK+ +  +     
Sbjct: 100 A--DVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKS 159

Query: 151 ---IKQMMLPDSKDG-PVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSK 210
              I+ MM   ++      PVIRT YDH+  +  L FHP   +L SG++D T+K FD+SK
Sbjct: 160 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSK 219

Query: 211 LTAKKAFRVIQVLLVSYSTFGCSFYFFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGD 270
            +AK+AF+ IQ                                  +   +RSIS HPSGD
Sbjct: 220 PSAKRAFKYIQ----------------------------------EAEMLRSISFHPSGD 279

Query: 271 YLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLW 330
           ++L GT HP   LYD+NTFQCF+S N P+  ++ AI  V Y+++ +MYVT SKDG ++LW
Sbjct: 280 FILVGTQHPTLRLYDINTFQCFVSCN-PQDQHTDAICSVNYNSSANMYVTGSKDGCIKLW 339

Query: 331 DGVSAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGA-- 390
           DGVS +C+ +   AH  AE  SA F+K+ +Y+LS GKDS  KLW++ TG+ + +Y GA  
Sbjct: 340 DGVSNRCITTFEKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGAGL 399

Query: 391 -THMQLRCQAVFNDNEEFVLSIDEPSNEIVIWDALTAERVARWPSNHIGPPRWLEHSPTE 450
                 R QAVFN  E++VL  DE +  +  WD+ TAER       H    R + HSPT 
Sbjct: 400 SGRQVHRTQAVFNHTEDYVLLPDERTISLCCWDSRTAERRNLLSLGHNNIVRCIVHSPTN 424

Query: 451 SAFISCGTDKSIRFW 454
             F++C  D   RFW
Sbjct: 460 PGFMTCSDDFRARFW 424

[Close]
BLAST of Cp4.1LG20g00880 vs. ExPASy Swiss-Prot
Match: Q99LC2 (Cleavage stimulation factor subunit 1 OS=Mus musculus OX=10090 GN=Cstf1 PE=1 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.4e-72
Identity = 158/435 (36.32%), Postives = 227/435 (52.18%), Query Frame = 0 

Query: 31  PLNVDVPPNKLMELVAKGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFS 90
           P +V  P  +L+ L+  G        +     +  Y  G S      +  P     ++F 
Sbjct: 40  PQSVCAPSEQLLHLIKLG--------MENDDTAVQYAIGRS-----DTVAPGTGIDLEFD 99

Query: 91  TVQDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAK----- 150
              D +  S    ++ET +++ HK   R A +S DG+ +ATGSAD SIK+ +  +     
Sbjct: 100 A--DVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKS 159

Query: 151 ---IKQMMLPDSKDG-PVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSK 210
              I+ MM   ++      PVIRT YDH+  +  L FHP   +L SG++D T+K FD+SK
Sbjct: 160 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSK 219

Query: 211 LTAKKAFRVIQVLLVSYSTFGCSFYFFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGD 270
            +AK+AF+ IQ                                  +   +RSIS HPSGD
Sbjct: 220 PSAKRAFKYIQ----------------------------------EAEMLRSISFHPSGD 279

Query: 271 YLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLW 330
           ++L GT HP   LYD+NTFQCF+S N P+  ++ AI  V Y+ + +MYVT SKDG ++LW
Sbjct: 280 FILVGTQHPTLRLYDINTFQCFVSCN-PQDQHTDAICSVNYNPSANMYVTGSKDGCIKLW 339

Query: 331 DGVSAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGA-- 390
           DGVS +C+ +   AH  AE  SA F+K+ +Y+LS GKDS  KLW++ TG+ + +Y GA  
Sbjct: 340 DGVSNRCITTFEKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGAGL 399

Query: 391 -THMQLRCQAVFNDNEEFVLSIDEPSNEIVIWDALTAERVARWPSNHIGPPRWLEHSPTE 450
                 R QAVFN  E+++L  DE +  +  WD+ TAER       H    R + HSPT 
Sbjct: 400 SGRQVHRTQAVFNHTEDYILLPDERTISLCCWDSRTAERRNLLSLGHNNIVRCIVHSPTN 424

Query: 451 SAFISCGTDKSIRFW 454
             F++C  D   RFW
Sbjct: 460 PGFMTCSDDFRARFW 424

[Close]
BLAST of Cp4.1LG20g00880 vs. ExPASy Swiss-Prot
Match: Q5BJQ6 (Cleavage stimulation factor subunit 1 OS=Rattus norvegicus OX=10116 GN=Cstf1 PE=2 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.4e-72
Identity = 158/435 (36.32%), Postives = 227/435 (52.18%), Query Frame = 0 

Query: 31  PLNVDVPPNKLMELVAKGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFS 90
           P +V  P  +L+ L+  G        +     +  Y  G S      +  P     ++F 
Sbjct: 40  PQSVCAPSEQLLHLIKLG--------MENDDTAVQYAIGRS-----DTVAPGTGIDLEFD 99

Query: 91  TVQDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAK----- 150
              D +  S    ++ET +++ HK   R A +S DG+ +ATGSAD SIK+ +  +     
Sbjct: 100 A--DVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKS 159

Query: 151 ---IKQMMLPDSKDG-PVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSK 210
              I+ MM   ++      PVIRT YDH+  +  L FHP   +L SG++D T+K FD+SK
Sbjct: 160 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSK 219

Query: 211 LTAKKAFRVIQVLLVSYSTFGCSFYFFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGD 270
            +AK+AF+ IQ                                  +   +RSIS HPSGD
Sbjct: 220 PSAKRAFKYIQ----------------------------------EAEMLRSISFHPSGD 279

Query: 271 YLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLW 330
           ++L GT HP   LYD+NTFQCF+S N P+  ++ AI  V Y+ + +MYVT SKDG ++LW
Sbjct: 280 FILVGTQHPTLRLYDINTFQCFVSCN-PQDQHTDAICSVNYNPSANMYVTGSKDGCIKLW 339

Query: 331 DGVSAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGA-- 390
           DGVS +C+ +   AH  AE  SA F+K+ +Y+LS GKDS  KLW++ TG+ + +Y GA  
Sbjct: 340 DGVSNRCITTFEKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGAGL 399

Query: 391 -THMQLRCQAVFNDNEEFVLSIDEPSNEIVIWDALTAERVARWPSNHIGPPRWLEHSPTE 450
                 R QAVFN  E+++L  DE +  +  WD+ TAER       H    R + HSPT 
Sbjct: 400 SGRQVHRTQAVFNHTEDYILLPDERTISLCCWDSRTAERRNLLSLGHNNIVRCIVHSPTN 424

Query: 451 SAFISCGTDKSIRFW 454
             F++C  D   RFW
Sbjct: 460 PGFMTCSDDFRARFW 424

[Close]
BLAST of Cp4.1LG20g00880 vs. ExPASy Swiss-Prot
Match: Q5R8K2 (Cleavage stimulation factor subunit 1 OS=Pongo abelii OX=9601 GN=CSTF1 PE=2 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 7.5e-72
Identity = 158/435 (36.32%), Postives = 227/435 (52.18%), Query Frame = 0 

Query: 31  PLNVDVPPNKLMELVAKGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFS 90
           P +V  P  +L+ L+  G        +     +  Y  G S      +  P     ++F 
Sbjct: 40  PQSVCAPSEQLLHLIKLG--------MENDDTAVQYAIGRS-----DTVAPGTGIDLEFD 99

Query: 91  TVQDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAK----- 150
              D +  S    ++ET +++ HK   R A +S DG+ +ATGSAD SIK+ +  +     
Sbjct: 100 A--DVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKS 159

Query: 151 ---IKQMMLPDSKDG-PVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSK 210
              I+ MM   ++      PVIRT YDH+  +  L FHP   +L SG++D T+K FD+SK
Sbjct: 160 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSK 219

Query: 211 LTAKKAFRVIQVLLVSYSTFGCSFYFFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGD 270
            +AK+AF+ IQ                                  +   +RSIS HPSGD
Sbjct: 220 PSAKRAFKYIQ----------------------------------EAEMLRSISFHPSGD 279

Query: 271 YLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLW 330
           ++L GT HP   LYD+NTFQCF+S N P+  ++ AI  V Y+++ +MYVT SKDG ++LW
Sbjct: 280 FILVGTQHPTLRLYDINTFQCFVSCN-PQDQHADAICSVNYNSSANMYVTGSKDGCIKLW 339

Query: 331 DGVSAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGA-- 390
           DGVS +C+ +   AH  AE  SA F+K+ +Y+LS GKDS  KLW++ TG+ + +Y GA  
Sbjct: 340 DGVSNRCITTFEKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGAGL 399

Query: 391 -THMQLRCQAVFNDNEEFVLSIDEPSNEIVIWDALTAERVARWPSNHIGPPRWLEHSPTE 450
                 R QAVFN  E++VL  DE +  +  WD+  AER       H    R + HSPT 
Sbjct: 400 SGRQVHRTQAVFNHTEDYVLLPDERTISLCCWDSRIAERRNLLSLGHNNIVRCIVHSPTN 424

Query: 451 SAFISCGTDKSIRFW 454
             F++C  D   RFW
Sbjct: 460 PGFMTCSDDFRARFW 424

[Close]
BLAST of Cp4.1LG20g00880 vs. NCBI nr
Match: XP_023519048.1 (cleavage stimulation factor subunit 50 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 821 bits (2121), Expect = 6.76e-299
Identity = 421/471 (89.38%), Postives = 421/471 (89.38%), Query Frame = 0 

Query: 3   MEGGFEQTLQDGKLYRQ----------------AASAAASASRTPLNVDVPPNKLMELVA 62
           MEGGFEQTLQDGKLYRQ                AASAAASASRTPLNVDVPPNKLMELVA
Sbjct: 1   MEGGFEQTLQDGKLYRQVNSLIVAHLRDHNLTQAASAAASASRTPLNVDVPPNKLMELVA 60

Query: 63  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPKHE 122
           KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPKHE
Sbjct: 61  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPKHE 120

Query: 123 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 182
           TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF
Sbjct: 121 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 180

Query: 183 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYSTFGCSFY 242
           YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQ              
Sbjct: 181 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQ-------------- 240

Query: 243 FFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 302
                               DTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA
Sbjct: 241 --------------------DTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 300

Query: 303 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 362
           NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF
Sbjct: 301 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 360

Query: 363 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE 422
           TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE
Sbjct: 361 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE 420

Query: 423 IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 457
           IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
Sbjct: 421 IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 437

[Close]
BLAST of Cp4.1LG20g00880 vs. NCBI nr
Match: XP_022923614.1 (cleavage stimulation factor subunit 50 isoform X1 [Cucurbita moschata])

HSP 1 Score: 817 bits (2110), Expect = 3.21e-297
Identity = 419/471 (88.96%), Postives = 419/471 (88.96%), Query Frame = 0 

Query: 3   MEGGFEQTLQDGKLYRQ----------------AASAAASASRTPLNVDVPPNKLMELVA 62
           MEG FEQTLQDGKLYRQ                AASAAASASRTPLNVDVPPNKLMELVA
Sbjct: 1   MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQAASAAASASRTPLNVDVPPNKLMELVA 60

Query: 63  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPKHE 122
           KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRAS IDFSTVQDTKGSSKNFPKHE
Sbjct: 61  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASAIDFSTVQDTKGSSKNFPKHE 120

Query: 123 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 182
           TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF
Sbjct: 121 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 180

Query: 183 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYSTFGCSFY 242
           YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQ              
Sbjct: 181 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQ-------------- 240

Query: 243 FFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 302
                               DTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA
Sbjct: 241 --------------------DTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 300

Query: 303 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 362
           NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF
Sbjct: 301 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 360

Query: 363 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE 422
           TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE
Sbjct: 361 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE 420

Query: 423 IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 457
           IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
Sbjct: 421 IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 437

[Close]
BLAST of Cp4.1LG20g00880 vs. NCBI nr
Match: XP_023001188.1 (cleavage stimulation factor subunit 50 isoform X1 [Cucurbita maxima])

HSP 1 Score: 815 bits (2106), Expect = 1.31e-296
Identity = 418/471 (88.75%), Postives = 418/471 (88.75%), Query Frame = 0 

Query: 3   MEGGFEQTLQDGKLYRQ----------------AASAAASASRTPLNVDVPPNKLMELVA 62
           MEG FEQTLQDGKLYRQ                AASAAASASRTPLNVDVPPNKLMELVA
Sbjct: 1   MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQAASAAASASRTPLNVDVPPNKLMELVA 60

Query: 63  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPKHE 122
           KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRAS IDFSTVQDTKGSSKNFPKHE
Sbjct: 61  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASAIDFSTVQDTKGSSKNFPKHE 120

Query: 123 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 182
           TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF
Sbjct: 121 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 180

Query: 183 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYSTFGCSFY 242
           YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQ              
Sbjct: 181 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQ-------------- 240

Query: 243 FFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 302
                               DTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA
Sbjct: 241 --------------------DTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 300

Query: 303 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 362
           NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF
Sbjct: 301 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 360

Query: 363 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE 422
           TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQA FNDNEEFVLSIDEPSNE
Sbjct: 361 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAAFNDNEEFVLSIDEPSNE 420

Query: 423 IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 457
           IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
Sbjct: 421 IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 437

[Close]
BLAST of Cp4.1LG20g00880 vs. NCBI nr
Match: KAG6584397.1 (Cleavage stimulation factor subunit 50, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 815 bits (2105), Expect = 1.85e-296
Identity = 417/471 (88.54%), Postives = 418/471 (88.75%), Query Frame = 0 

Query: 3   MEGGFEQTLQDGKLYRQ----------------AASAAASASRTPLNVDVPPNKLMELVA 62
           MEG FEQTLQDGKLYRQ                AASAAASASRTPLNVDVPPNKLMELVA
Sbjct: 1   MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQAASAAASASRTPLNVDVPPNKLMELVA 60

Query: 63  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPKHE 122
           KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRAS IDFSTVQDTKGSSKNFPKHE
Sbjct: 61  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASAIDFSTVQDTKGSSKNFPKHE 120

Query: 123 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 182
           TRHLSEHKNVARCARFS DGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF
Sbjct: 121 TRHLSEHKNVARCARFSTDGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 180

Query: 183 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYSTFGCSFY 242
           YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQ              
Sbjct: 181 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQ-------------- 240

Query: 243 FFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 302
                               DTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA
Sbjct: 241 --------------------DTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 300

Query: 303 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 362
           NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF
Sbjct: 301 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 360

Query: 363 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE 422
           TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE
Sbjct: 361 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE 420

Query: 423 IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 457
           +VIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
Sbjct: 421 VVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 437

[Close]
BLAST of Cp4.1LG20g00880 vs. NCBI nr
Match: XP_008452744.1 (PREDICTED: cleavage stimulation factor subunit 50 isoform X1 [Cucumis melo])

HSP 1 Score: 778 bits (2008), Expect = 1.11e-281
Identity = 394/471 (83.65%), Postives = 409/471 (86.84%), Query Frame = 0 

Query: 3   MEGGFEQTLQDGKLYRQ----------------AASAAASASRTPLNVDVPPNKLMELVA 62
           MEG FEQTLQDGKLYRQ                AASAAASA+ TPLNVD+PP KLMELVA
Sbjct: 1   MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQAASAAASATMTPLNVDIPPKKLMELVA 60

Query: 63  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPKHE 122
           KGLAVEK+E LRGSPASALYEFGSSVP+TFGS QPSRAS I+FST QDTK SSKNFPKHE
Sbjct: 61  KGLAVEKDETLRGSPASALYEFGSSVPTTFGSAQPSRASAINFSTTQDTKVSSKNFPKHE 120

Query: 123 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 182
           TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPD+KDGPVRPVIRTF
Sbjct: 121 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTF 180

Query: 183 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYSTFGCSFY 242
           YDHIQPINDLDFHPQNTVL+SGAKD TIKFFDFSKLTAKKAFRVIQ              
Sbjct: 181 YDHIQPINDLDFHPQNTVLVSGAKDHTIKFFDFSKLTAKKAFRVIQ-------------- 240

Query: 243 FFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 302
                               DTHNVRSISLHPSGD+LLAGTDH IAHLYDVNTFQCFLSA
Sbjct: 241 --------------------DTHNVRSISLHPSGDHLLAGTDHQIAHLYDVNTFQCFLSA 300

Query: 303 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 362
           NVPEIGN+GAINQ+RYSATGSMYVTASKDGAVRLWDG+SAKC+RSIVSAHGTAEATSAKF
Sbjct: 301 NVPEIGNNGAINQIRYSATGSMYVTASKDGAVRLWDGISAKCIRSIVSAHGTAEATSAKF 360

Query: 363 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE 422
           TKDERYVLSCGKDS+VKLWDVGTG+LVKQYVGATHMQLRCQAVFND EEFVLSIDEPSNE
Sbjct: 361 TKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNE 420

Query: 423 IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 457
           IVIWDALTAERVARWPSNH+G PRWLEHSPTESAFISCGTDKSIRFWKETL
Sbjct: 421 IVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL 437

[Close]
BLAST of Cp4.1LG20g00880 vs. ExPASy TrEMBL
Match: A0A6J1E6X2 (Cleavage stimulation factor 50 kDa subunit OS=Cucurbita moschata OX=3662 GN=LOC111431271 PE=4 SV=1)

HSP 1 Score: 817 bits (2110), Expect = 1.55e-297
Identity = 419/471 (88.96%), Postives = 419/471 (88.96%), Query Frame = 0 

Query: 3   MEGGFEQTLQDGKLYRQ----------------AASAAASASRTPLNVDVPPNKLMELVA 62
           MEG FEQTLQDGKLYRQ                AASAAASASRTPLNVDVPPNKLMELVA
Sbjct: 1   MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQAASAAASASRTPLNVDVPPNKLMELVA 60

Query: 63  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPKHE 122
           KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRAS IDFSTVQDTKGSSKNFPKHE
Sbjct: 61  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASAIDFSTVQDTKGSSKNFPKHE 120

Query: 123 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 182
           TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF
Sbjct: 121 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 180

Query: 183 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYSTFGCSFY 242
           YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQ              
Sbjct: 181 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQ-------------- 240

Query: 243 FFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 302
                               DTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA
Sbjct: 241 --------------------DTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 300

Query: 303 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 362
           NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF
Sbjct: 301 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 360

Query: 363 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE 422
           TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE
Sbjct: 361 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE 420

Query: 423 IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 457
           IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
Sbjct: 421 IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 437

[Close]
BLAST of Cp4.1LG20g00880 vs. ExPASy TrEMBL
Match: A0A6J1KPS8 (Cleavage stimulation factor 50 kDa subunit OS=Cucurbita maxima OX=3661 GN=LOC111495397 PE=4 SV=1)

HSP 1 Score: 815 bits (2106), Expect = 6.32e-297
Identity = 418/471 (88.75%), Postives = 418/471 (88.75%), Query Frame = 0 

Query: 3   MEGGFEQTLQDGKLYRQ----------------AASAAASASRTPLNVDVPPNKLMELVA 62
           MEG FEQTLQDGKLYRQ                AASAAASASRTPLNVDVPPNKLMELVA
Sbjct: 1   MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQAASAAASASRTPLNVDVPPNKLMELVA 60

Query: 63  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPKHE 122
           KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRAS IDFSTVQDTKGSSKNFPKHE
Sbjct: 61  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASAIDFSTVQDTKGSSKNFPKHE 120

Query: 123 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 182
           TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF
Sbjct: 121 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 180

Query: 183 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYSTFGCSFY 242
           YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQ              
Sbjct: 181 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQ-------------- 240

Query: 243 FFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 302
                               DTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA
Sbjct: 241 --------------------DTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 300

Query: 303 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 362
           NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF
Sbjct: 301 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 360

Query: 363 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE 422
           TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQA FNDNEEFVLSIDEPSNE
Sbjct: 361 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAAFNDNEEFVLSIDEPSNE 420

Query: 423 IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 457
           IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
Sbjct: 421 IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 437

[Close]
BLAST of Cp4.1LG20g00880 vs. ExPASy TrEMBL
Match: A0A1S3BUL1 (Cleavage stimulation factor 50 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103493651 PE=4 SV=1)

HSP 1 Score: 778 bits (2008), Expect = 5.38e-282
Identity = 394/471 (83.65%), Postives = 409/471 (86.84%), Query Frame = 0 

Query: 3   MEGGFEQTLQDGKLYRQ----------------AASAAASASRTPLNVDVPPNKLMELVA 62
           MEG FEQTLQDGKLYRQ                AASAAASA+ TPLNVD+PP KLMELVA
Sbjct: 1   MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQAASAAASATMTPLNVDIPPKKLMELVA 60

Query: 63  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPKHE 122
           KGLAVEK+E LRGSPASALYEFGSSVP+TFGS QPSRAS I+FST QDTK SSKNFPKHE
Sbjct: 61  KGLAVEKDETLRGSPASALYEFGSSVPTTFGSAQPSRASAINFSTTQDTKVSSKNFPKHE 120

Query: 123 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 182
           TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPD+KDGPVRPVIRTF
Sbjct: 121 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTF 180

Query: 183 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYSTFGCSFY 242
           YDHIQPINDLDFHPQNTVL+SGAKD TIKFFDFSKLTAKKAFRVIQ              
Sbjct: 181 YDHIQPINDLDFHPQNTVLVSGAKDHTIKFFDFSKLTAKKAFRVIQ-------------- 240

Query: 243 FFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 302
                               DTHNVRSISLHPSGD+LLAGTDH IAHLYDVNTFQCFLSA
Sbjct: 241 --------------------DTHNVRSISLHPSGDHLLAGTDHQIAHLYDVNTFQCFLSA 300

Query: 303 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 362
           NVPEIGN+GAINQ+RYSATGSMYVTASKDGAVRLWDG+SAKC+RSIVSAHGTAEATSAKF
Sbjct: 301 NVPEIGNNGAINQIRYSATGSMYVTASKDGAVRLWDGISAKCIRSIVSAHGTAEATSAKF 360

Query: 363 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE 422
           TKDERYVLSCGKDS+VKLWDVGTG+LVKQYVGATHMQLRCQAVFND EEFVLSIDEPSNE
Sbjct: 361 TKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNE 420

Query: 423 IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 457
           IVIWDALTAERVARWPSNH+G PRWLEHSPTESAFISCGTDKSIRFWKETL
Sbjct: 421 IVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL 437

[Close]
BLAST of Cp4.1LG20g00880 vs. ExPASy TrEMBL
Match: A0A5D3BGR2 (Cleavage stimulation factor 50 kDa subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001530 PE=4 SV=1)

HSP 1 Score: 775 bits (2002), Expect = 5.53e-281
Identity = 394/477 (82.60%), Postives = 409/477 (85.74%), Query Frame = 0 

Query: 3   MEGGFEQTLQDGKLYRQ----------------------AASAAASASRTPLNVDVPPNK 62
           MEG FEQTLQDGKLYRQ                      AASAAASA+ TPLNVD+PP K
Sbjct: 1   MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLRAASAAASATMTPLNVDIPPKK 60

Query: 63  LMELVAKGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSK 122
           LMELVAKGLAVEK+E LRGSPASALYEFGSSVP+TFGS QPSRAS I+FST QDTK SSK
Sbjct: 61  LMELVAKGLAVEKDETLRGSPASALYEFGSSVPTTFGSAQPSRASAINFSTTQDTKVSSK 120

Query: 123 NFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVR 182
           NFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPD+KDGPVR
Sbjct: 121 NFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVR 180

Query: 183 PVIRTFYDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYST 242
           PVIRTFYDHIQPINDLDFHPQNTVL+SGAKD TIKFFDFSKLTAKKAFRVIQ        
Sbjct: 181 PVIRTFYDHIQPINDLDFHPQNTVLVSGAKDHTIKFFDFSKLTAKKAFRVIQ-------- 240

Query: 243 FGCSFYFFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTF 302
                                     DTHNVRSISLHPSGD+LLAGTDH IAHLYDVNTF
Sbjct: 241 --------------------------DTHNVRSISLHPSGDHLLAGTDHQIAHLYDVNTF 300

Query: 303 QCFLSANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAE 362
           QCFLSANVPEIGN+GAINQ+RYSATGSMYVTASKDGAVRLWDG+SAKC+RSIVSAHGTAE
Sbjct: 301 QCFLSANVPEIGNNGAINQIRYSATGSMYVTASKDGAVRLWDGISAKCIRSIVSAHGTAE 360

Query: 363 ATSAKFTKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSI 422
           ATSAKFTKDERYVLSCGKDS+VKLWDVGTG+LVKQYVGATHMQLRCQAVFND EEFVLSI
Sbjct: 361 ATSAKFTKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSI 420

Query: 423 DEPSNEIVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 457
           DEPSNEIVIWDALTAERVARWPSNH+G PRWLEHSPTESAFISCGTDKSIRFWKETL
Sbjct: 421 DEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL 443

[Close]
BLAST of Cp4.1LG20g00880 vs. ExPASy TrEMBL
Match: A0A0A0LVN0 (Cleavage stimulation factor 50 kDa subunit OS=Cucumis sativus OX=3659 GN=Csa_1G039850 PE=4 SV=1)

HSP 1 Score: 774 bits (1999), Expect = 1.26e-280
Identity = 391/471 (83.01%), Postives = 407/471 (86.41%), Query Frame = 0 

Query: 3   MEGGFEQTLQDGKLYRQ----------------AASAAASASRTPLNVDVPPNKLMELVA 62
           MEG FEQTLQDG+LYRQ                AASAAASA+ TPLNVDVPP KLMELVA
Sbjct: 1   MEGSFEQTLQDGQLYRQVNSLIVAHLRDHNLTQAASAAASATMTPLNVDVPPKKLMELVA 60

Query: 63  KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPKHE 122
           KGLAVEK+E LRGSPASALYEFGSS+P+TFGS QPSR S IDFST QDTKGSSKNFPKHE
Sbjct: 61  KGLAVEKDETLRGSPASALYEFGSSMPTTFGSAQPSRPSAIDFSTTQDTKGSSKNFPKHE 120

Query: 123 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF 182
           TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPD+KDGPVRPVIRTF
Sbjct: 121 TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTF 180

Query: 183 YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYSTFGCSFY 242
           YDHIQPINDLDFHPQNTVL+SGAKD TIKFFDFSKLTAKKAFRVIQ              
Sbjct: 181 YDHIQPINDLDFHPQNTVLVSGAKDHTIKFFDFSKLTAKKAFRVIQ-------------- 240

Query: 243 FFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSA 302
                               DTHNVRSISLHPSGDYLLAGTDH I HLYDVNTFQCFLSA
Sbjct: 241 --------------------DTHNVRSISLHPSGDYLLAGTDHQIPHLYDVNTFQCFLSA 300

Query: 303 NVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKF 362
           NVPEIGN+GAINQ+RYSATGSMYVTASKDGAVRLWDG+ AKC+RSIVSAHGTAEATSAKF
Sbjct: 301 NVPEIGNNGAINQIRYSATGSMYVTASKDGAVRLWDGIGAKCIRSIVSAHGTAEATSAKF 360

Query: 363 TKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNE 422
           TKDERYVLSCGKDS+VKLWDVGTG+LVKQYVGATH+QLRCQAVFND EEFVLSIDEPSNE
Sbjct: 361 TKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHIQLRCQAVFNDTEEFVLSIDEPSNE 420

Query: 423 IVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 457
           IVIWDALTAERVARWPSNH+G PRWLEHSPTESAFISCGTDKSIRFWKE+L
Sbjct: 421 IVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKESL 437

[Close]
BLAST of Cp4.1LG20g00880 vs. TAIR 10
Match: AT5G60940.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 558.5 bits (1438), Expect = 4.9e-159
Identity = 283/473 (59.83%), Postives = 344/473 (72.73%), Query Frame = 0 

Query: 1   MPMEGGFEQTLQDGKLYR----------------QAASAAASASRTPLNVDVPPNKLMEL 60
           M   G  EQ LQDG ++R                Q ASA ASA+ TPLN++VPPN+L+EL
Sbjct: 1   MGNSGDLEQALQDGNIFRQLNALIVAHLRHHNLSQVASAVASATMTPLNIEVPPNRLLEL 60

Query: 61  VAKGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPK 120
           VAKGLA E    LRG  +S L      +PS++GS    R ++IDFS V   KGSSK  PK
Sbjct: 61  VAKGLAAENNGTLRGVSSSVL------LPSSYGSITTPRTASIDFS-VNHAKGSSKTIPK 120

Query: 121 HETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIR 180
           HE++ LSEHK+V RCARFS DG F ATG AD SIKLFEV K+KQM+   S D   RP+IR
Sbjct: 121 HESKTLSEHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVKQMI---SGDTQARPLIR 180

Query: 181 TFYDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYSTFGCS 240
           TFYDH +PINDLDFHP++T+LIS AKD  IKFFDFSK TAK+AF+V Q            
Sbjct: 181 TFYDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQ------------ 240

Query: 241 FYFFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFL 300
                                 DTHNVRSIS HPSG++LLAGTDHPI HLYDVNT+QCFL
Sbjct: 241 ----------------------DTHNVRSISFHPSGEFLLAGTDHPIPHLYDVNTYQCFL 300

Query: 301 SANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSA 360
            +N P+ G SGAINQVRYS+TGS+Y+TASKDGA+RL+DGVSAKC+RSI +AHG +E TSA
Sbjct: 301 PSNFPDSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSA 360

Query: 361 KFTKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPS 420
            FTKD+R+VLS GKDSTVKLW++G+G++VK+Y+GA  ++LR QA+FND EEFV+SIDE S
Sbjct: 361 VFTKDQRFVLSSGKDSTVKLWEIGSGRMVKEYLGAKRVKLRSQAIFNDTEEFVISIDEAS 420

Query: 421 NEIVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 458
           NE+V WDA TA++VA+WPSNH G PRW+EHSP ES F++CG D+SIRFWKE++
Sbjct: 421 NEVVTWDARTADKVAKWPSNHNGAPRWIEHSPVESVFVTCGIDRSIRFWKESV 429

[Close]
BLAST of Cp4.1LG20g00880 vs. TAIR 10
Match: AT5G60940.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 490.0 bits (1260), Expect = 2.1e-138
Identity = 235/368 (63.86%), Postives = 285/368 (77.45%), Query Frame = 0 

Query: 90  STVQDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQM 149
           ++V   KGSSK  PKHE++ LSEHK+V RCARFS DG F ATG AD SIKLFEV K+KQM
Sbjct: 7   TSVNHAKGSSKTIPKHESKTLSEHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVKQM 66

Query: 150 MLPDSKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFR 209
           +   S D   RP+IRTFYDH +PINDLDFHP++T+LIS AKD  IKFFDFSK TAK+AF+
Sbjct: 67  I---SGDTQARPLIRTFYDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFK 126

Query: 210 VIQVLLVSYSTFGCSFYFFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDH 269
           V Q                                  DTHNVRSIS HPSG++LLAGTDH
Sbjct: 127 VFQ----------------------------------DTHNVRSISFHPSGEFLLAGTDH 186

Query: 270 PIAHLYDVNTFQCFLSANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCL 329
           PI HLYDVNT+QCFL +N P+ G SGAINQVRYS+TGS+Y+TASKDGA+RL+DGVSAKC+
Sbjct: 187 PIPHLYDVNTYQCFLPSNFPDSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCV 246

Query: 330 RSIVSAHGTAEATSAKFTKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAV 389
           RSI +AHG +E TSA FTKD+R+VLS GKDSTVKLW++G+G++VK+Y+GA  ++LR QA+
Sbjct: 247 RSIGNAHGKSEVTSAVFTKDQRFVLSSGKDSTVKLWEIGSGRMVKEYLGAKRVKLRSQAI 306

Query: 390 FNDNEEFVLSIDEPSNEIVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKS 449
           FND EEFV+SIDE SNE+V WDA TA++VA+WPSNH G PRW+EHSP ES F++CG D+S
Sbjct: 307 FNDTEEFVISIDEASNEVVTWDARTADKVAKWPSNHNGAPRWIEHSPVESVFVTCGIDRS 337

Query: 450 IRFWKETL 458
           IRFWKE++
Sbjct: 367 IRFWKESV 337

[Close]
BLAST of Cp4.1LG20g00880 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 8.6e-23
Identity = 75/354 (21.19%), Postives = 160/354 (45.20%), Query Frame = 0 

Query: 103 PKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPV 162
           P   ++ L+ H       +FS+DGR +A+ SAD +I+ + +  I         + P+   
Sbjct: 13  PYVHSQTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTI---------NDPIAEP 72

Query: 163 IRTFYDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYSTFG 222
           ++ F  H   I+D+ F      ++S + D+T+K +D                        
Sbjct: 73  VQEFTGHENGISDVAFSSDARFIVSASDDKTLKLWD------------------------ 132

Query: 223 CSFYFFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQC 282
                       +E   L   +I  T+    ++ +P  + +++G+      ++DV T +C
Sbjct: 133 ------------VETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKC 192

Query: 283 FLSANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEAT 342
                +P   +S  +  V ++  GS+ V++S DG  R+WD  +  C+++++        +
Sbjct: 193 L--KVLP--AHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDE-NPPVS 252

Query: 343 SAKFTKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFN-DNEEFVLSID 402
             +F+ + +++L    D+T++LW++ + K +K Y G  + Q    + F+  N + ++S  
Sbjct: 253 FVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVSGS 312

Query: 403 EPSNEIVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKE 456
           E  N + +W+ L ++++ +    H      +   PTE+   S   DK++R W +
Sbjct: 313 E-DNCVHMWE-LNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTVRIWTQ 314

[Close]
BLAST of Cp4.1LG20g00880 vs. TAIR 10
Match: AT4G02730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-22
Identity = 88/366 (24.04%), Postives = 161/366 (43.99%), Query Frame = 0 

Query: 97  GSSKNFPKHET-RHLSE---HKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLP 156
           G+S N P ++  RHL     H     C +FS DG  +A+ S D ++ L+           
Sbjct: 22  GTSGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYS----- 81

Query: 157 DSKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQ 216
                    +I  +  H   I+DL +   +    S + D T++ +D     A+  +  ++
Sbjct: 82  ---------LIHRYEGHSSGISDLAWSSDSHYTCSASDDCTLRIWD-----ARSPYECLK 141

Query: 217 VLLVSYSTFGCSFYFFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIA 276
           VL                R H              T+ V  ++ +P  + +++G+     
Sbjct: 142 VL----------------RGH--------------TNFVFCVNFNPPSNLIVSGSFDETI 201

Query: 277 HLYDVNTFQCFLSANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSI 336
            +++V T +C          +S  I+ V ++  GS+ V+AS DG+ ++WD     CL+++
Sbjct: 202 RIWEVKTGKCVRMIK----AHSMPISSVHFNRDGSLIVSASHDGSCKIWDAKEGTCLKTL 261

Query: 337 VSAHGTAEATSAKFTKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFN- 396
           +     A  + AKF+ + +++L    DST+KL +  TGK +K Y G T+      + F+ 
Sbjct: 262 IDDKSPA-VSFAKFSPNGKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCITSAFSV 321

Query: 397 DNEEFVLSIDEPSNEIVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGT--DKS 456
            N ++++S  E  N + +WD L A  + +    H      +   P ++   S G   DK+
Sbjct: 322 TNGKYIVSGSE-DNCVYLWD-LQARNILQRLEGHTDAVISVSCHPVQNEISSSGNHLDKT 331

[Close]
BLAST of Cp4.1LG20g00880 vs. TAIR 10
Match: AT1G73720.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 63.5 bits (153), Expect = 4.9e-10
Identity = 64/293 (21.84%), Postives = 124/293 (42.32%), Query Frame = 0 

Query: 93  QDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEV--AKIKQMM 152
           QD + +  N   H  +     K+ A CARFS DG+F+A+ S D  I++++    K+K+ +
Sbjct: 194 QDVEDTHPNVLTHTIKF--GKKSHAECARFSPDGQFLASSSVDGFIEVWDYISGKLKKDL 253

Query: 153 LPDSKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRV 212
              + +        +F  H  P+  +DF   + +L SG++D  IK +        + F  
Sbjct: 254 QYQADE--------SFMMHDDPVLCIDFSRDSEMLASGSQDGKIKIWRIRTGVCIRRF-- 313

Query: 213 IQVLLVSYSTFGCSFYFFYFRKHSLEFFLLPLFVIKDTHN--VRSISLHPSGDYLLAGTD 272
                                               D H+  V S+S    G  LL+ + 
Sbjct: 314 ------------------------------------DAHSQGVTSLSFSRDGSQLLSTSF 373

Query: 273 HPIAHLYDVNTFQCFLSANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKC 332
              A ++ + + +          G++  +N   +++ GS  +TAS D  V++WD  +  C
Sbjct: 374 DQTARIHGLKSGKLLKEFR----GHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKTTDC 433

Query: 333 LRSI---VSAHGTAEATSA--KFTKDERYVLSCGKDSTVKLWDVGTGKLVKQY 377
           L++        GT  + ++   F K+  +++ C K S++ +  +  G++VK +
Sbjct: 434 LQTFKPPPPLRGTDASVNSIHLFPKNTEHIVVCNKTSSIYIMTL-QGQVVKSF 433

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g00880 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L4J26.9e-15859.83Cleavage stimulation factor subunit 50 OS=Arabidopsis thaliana OX=3702 GN=CSTF50... [more]
Q050481.5e-7236.55Cleavage stimulation factor subunit 1 OS=Homo sapiens OX=9606 GN=CSTF1 PE=1 SV=1[more]
Q99LC23.4e-7236.32Cleavage stimulation factor subunit 1 OS=Mus musculus OX=10090 GN=Cstf1 PE=1 SV=... [more]
Q5BJQ63.4e-7236.32Cleavage stimulation factor subunit 1 OS=Rattus norvegicus OX=10116 GN=Cstf1 PE=... [more]
Q5R8K27.5e-7236.32Cleavage stimulation factor subunit 1 OS=Pongo abelii OX=9601 GN=CSTF1 PE=2 SV=1[more]
BLAST of Cp4.1LG20g00880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023519048.16.76e-29989.38cleavage stimulation factor subunit 50 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022923614.13.21e-29788.96cleavage stimulation factor subunit 50 isoform X1 [Cucurbita moschata][more]
XP_023001188.11.31e-29688.75cleavage stimulation factor subunit 50 isoform X1 [Cucurbita maxima][more]
KAG6584397.11.85e-29688.54Cleavage stimulation factor subunit 50, partial [Cucurbita argyrosperma subsp. s... [more]
XP_008452744.11.11e-28183.65PREDICTED: cleavage stimulation factor subunit 50 isoform X1 [Cucumis melo][more]
BLAST of Cp4.1LG20g00880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E6X21.55e-29788.96Cleavage stimulation factor 50 kDa subunit OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1KPS86.32e-29788.75Cleavage stimulation factor 50 kDa subunit OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A1S3BUL15.38e-28283.65Cleavage stimulation factor 50 kDa subunit OS=Cucumis melo OX=3656 GN=LOC1034936... [more]
A0A5D3BGR25.53e-28182.60Cleavage stimulation factor 50 kDa subunit OS=Cucumis melo var. makuwa OX=119469... [more]
A0A0A0LVN01.26e-28083.01Cleavage stimulation factor 50 kDa subunit OS=Cucumis sativus OX=3659 GN=Csa_1G0... [more]
BLAST of Cp4.1LG20g00880 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G60940.14.9e-15959.83Transducin/WD40 repeat-like superfamily protein [more]
AT5G60940.22.1e-13863.86Transducin/WD40 repeat-like superfamily protein [more]
AT3G49660.18.6e-2321.19Transducin/WD40 repeat-like superfamily protein [more]
AT4G02730.11.1e-2224.04Transducin/WD40 repeat-like superfamily protein [more]
AT1G73720.14.9e-1021.84transducin family protein / WD-40 repeat family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 441..455
score: 28.91
coord: 309..323
score: 35.72
coord: 353..367
score: 37.63
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 369..411
e-value: 440.0
score: 0.3
coord: 414..454
e-value: 0.42
score: 19.4
coord: 159..198
e-value: 1.3E-6
score: 38.0
coord: 325..366
e-value: 4.5E-5
score: 32.8
coord: 238..276
e-value: 8.1
score: 11.3
coord: 103..142
e-value: 3.9E-5
score: 33.1
coord: 279..322
e-value: 8.9E-4
score: 28.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 107..141
e-value: 5.6E-5
score: 23.8
coord: 292..322
e-value: 0.045
score: 14.6
coord: 327..366
e-value: 1.7E-4
score: 22.3
coord: 163..198
e-value: 3.0E-5
score: 24.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 290..331
score: 12.680634
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 342..375
score: 11.143396
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 166..207
score: 10.842632
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 110..151
score: 10.107432
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 241..456
e-value: 1.3E-38
score: 134.6
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 74..214
e-value: 3.8E-18
score: 67.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..110
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 166..200
score: 8.966513
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 290..322
score: 10.23196
NoneNo IPR availableCDDcd00200WD40coord: 106..454
e-value: 1.67536E-46
score: 160.578
IPR044633Cleavage stimulation factor subunit 1-likePANTHERPTHR44133CLEAVAGE STIMULATION FACTOR SUBUNIT 1coord: 17..456
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 353..367
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 102..454

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g00880.1Cp4.1LG20g00880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031124 mRNA 3'-end processing
cellular_component GO:0005848 mRNA cleavage stimulating factor complex
molecular_function GO:0005515 protein binding