Cp4.1LG20g00500 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g00500
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG20: 200926 .. 201282 (+)
RNA-Seq Expression	Cp4.1LG20g00500
Synteny	Cp4.1LG20g00500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGTAGTAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAAAGCGACGAGAACCCCACGGACGAGGCCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGACGGAGTGGTGTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGGTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

mRNA sequence

ATGTCGGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGTAGTAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAAAGCGACGAGAACCCCACGGACGAGGCCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGACGGAGTGGTGTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGGTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

Coding sequence (CDS)

ATGTCGGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGTAGTAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAAAGCGACGAGAACCCCACGGACGAGGCCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGACGGAGTGGTGTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGGTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

Protein sequence

MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK

Homology

[Close]

BLAST of Cp4.1LG20g00500 vs. NCBI nr
Match: XP_023001360.1 (uncharacterized protein LOC111495520 [Cucurbita maxima] >XP_023001361.1 uncharacterized protein LOC111495520 [Cucurbita maxima])

HSP 1 Score: 220 bits (561), Expect = 4.43e-72
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEG 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDE EILSSADGVEG
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEG 60

Query: 61  EDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 118
           E+GVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTK KSVEEALDDRVKKKADRYCK
Sbjct: 61  EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 118

[Close]

BLAST of Cp4.1LG20g00500 vs. NCBI nr
Match: KAG7020027.1 (hypothetical protein SDJN02_18995, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215 bits (548), Expect = 4.54e-70
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKK--DKSKSDENPTDEAEILSSADGV 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKK  DKSKS+ENPTDEAEILSSADGV
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKKKDKSKSEENPTDEAEILSSADGV 60

Query: 61  EGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 118
           EGE+GVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTK KSVEEALDDRVKKKADRYCK
Sbjct: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 120

[Close]

BLAST of Cp4.1LG20g00500 vs. NCBI nr
Match: XP_022924043.1 (uncharacterized protein LOC111431590 [Cucurbita moschata])

HSP 1 Score: 214 bits (545), Expect = 1.30e-69
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKK--KDKSKSDENPTDEAEILSSADGV 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKK  KDKSKS+ENPTDEAEILSSADGV
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKEKKDKSKSEENPTDEAEILSSADGV 60

Query: 61  EGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 118
           EGE+GVVYTIDAAKRMKYEELFPVETR+FGYDPNNADTK KSVEEALDDRVKKKADRYCK
Sbjct: 61  EGEEGVVYTIDAAKRMKYEELFPVETRRFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 120

[Close]

BLAST of Cp4.1LG20g00500 vs. NCBI nr
Match: XP_038893643.1 (uncharacterized protein LOC120082512 [Benincasa hispida])

HSP 1 Score: 209 bits (533), Expect = 8.26e-68
Identity = 108/118 (91.53%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEG 60
           MSDPY+G KGGRLTFKGGVLASRSKDIDKKKKKKKKDKSK++ENPTDEAEILSSADGVEG
Sbjct: 1   MSDPYAGVKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTEENPTDEAEILSSADGVEG 60

Query: 61  EDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 118
            DG +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVEEALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 118

[Close]

BLAST of Cp4.1LG20g00500 vs. NCBI nr
Match: XP_004137395.2 (uncharacterized protein LOC101213981 [Cucumis sativus] >KGN63966.1 hypothetical protein Csa_013194 [Cucumis sativus])

HSP 1 Score: 206 bits (524), Expect = 1.95e-66
Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEG 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSK+DENPTD+ EIL+SADGVE 
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED 60

Query: 61  EDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 118
            DG +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Cp4.1LG20g00500 vs. ExPASy TrEMBL
Match: A0A6J1KIE4 (uncharacterized protein LOC111495520 OS=Cucurbita maxima OX=3661 GN=LOC111495520 PE=4 SV=1)

HSP 1 Score: 220 bits (561), Expect = 2.14e-72
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEG 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDE EILSSADGVEG
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEG 60

Query: 61  EDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 118
           E+GVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTK KSVEEALDDRVKKKADRYCK
Sbjct: 61  EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 118

[Close]

BLAST of Cp4.1LG20g00500 vs. ExPASy TrEMBL
Match: A0A6J1EB87 (uncharacterized protein LOC111431590 OS=Cucurbita moschata OX=3662 GN=LOC111431590 PE=4 SV=1)

HSP 1 Score: 214 bits (545), Expect = 6.31e-70
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKK--KDKSKSDENPTDEAEILSSADGV 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKK  KDKSKS+ENPTDEAEILSSADGV
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKEKKDKSKSEENPTDEAEILSSADGV 60

Query: 61  EGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 118
           EGE+GVVYTIDAAKRMKYEELFPVETR+FGYDPNNADTK KSVEEALDDRVKKKADRYCK
Sbjct: 61  EGEEGVVYTIDAAKRMKYEELFPVETRRFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 120

[Close]

BLAST of Cp4.1LG20g00500 vs. ExPASy TrEMBL
Match: A0A5A7SXI8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00570 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 9.43e-67
Identity = 105/118 (88.98%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEG 60
           MSDPY+GAKGGRLTFKGGVLASRSKDIDKKKKKKKKDK+K+DENPTD+ EIL+SADGVEG
Sbjct: 1   MSDPYAGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKTKTDENPTDDGEILTSADGVEG 60

Query: 61  EDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 118
            DG +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Cp4.1LG20g00500 vs. ExPASy TrEMBL
Match: A0A0A0LVD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 9.43e-67
Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEG 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSK+DENPTD+ EIL+SADGVE 
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED 60

Query: 61  EDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 118
            DG +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Cp4.1LG20g00500 vs. ExPASy TrEMBL
Match: A0A1S3AWC8 (uncharacterized protein LOC103483601 OS=Cucumis melo OX=3656 GN=LOC103483601 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 9.43e-67
Identity = 105/118 (88.98%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEG 60
           MSDPY+GAKGGRLTFKGGVLASRSKDIDKKKKKKKKDK+K+DENPTD+ EIL+SADGVEG
Sbjct: 1   MSDPYAGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKTKTDENPTDDGEILTSADGVEG 60

Query: 61  EDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 118
            DG +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Cp4.1LG20g00500 vs. TAIR 10
Match: AT2G25720.1 (unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 5.0e-23
Identity = 65/120 (54.17%), Postives = 77/120 (64.17%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSD--ENPTDEAEILSSADGV 60
           MSDPY    GGRL FKGG LA+R     KKKKK+KK+K K D  E+    A   S     
Sbjct: 1   MSDPYERVNGGRLAFKGGDLATRKSIEKKKKKKQKKNKEKLDGVEDGAKTAPDGSPPPAA 60

Query: 61  EGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 119
              D  +Y+IDAAK+ KY++LFPVE +KFGY P       +S E+ALDDRVKKKADRYCK
Sbjct: 61  AAGDEDIYSIDAAKKKKYDDLFPVEAKKFGYIPK---ANFESREDALDDRVKKKADRYCK 117

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g00500 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG20g00500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001360.1	4.43e-72	97.46	uncharacterized protein LOC111495520 [Cucurbita maxima] >XP_023001361.1 uncharac...	[more]
KAG7020027.1	4.54e-70	95.83	hypothetical protein SDJN02_18995, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022924043.1	1.30e-69	95.00	uncharacterized protein LOC111431590 [Cucurbita moschata]	[more]
XP_038893643.1	8.26e-68	91.53	uncharacterized protein LOC120082512 [Benincasa hispida]	[more]
XP_004137395.2	1.95e-66	89.83	uncharacterized protein LOC101213981 [Cucumis sativus] >KGN63966.1 hypothetical ...	[more]

BLAST of Cp4.1LG20g00500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KIE4	2.14e-72	97.46	uncharacterized protein LOC111495520 OS=Cucurbita maxima OX=3661 GN=LOC111495520...	[more]
A0A6J1EB87	6.31e-70	95.00	uncharacterized protein LOC111431590 OS=Cucurbita moschata OX=3662 GN=LOC1114315...	[more]
A0A5A7SXI8	9.43e-67	88.98	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LVD6	9.43e-67	89.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1	[more]
A0A1S3AWC8	9.43e-67	88.98	uncharacterized protein LOC103483601 OS=Cucumis melo OX=3656 GN=LOC103483601 PE=...	[more]

BLAST of Cp4.1LG20g00500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25720.1	5.0e-23	54.17	unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	PANTHER	PTHR13282:SF7	OS04G0566000 PROTEIN	coord: 1..118
IPR013865	Protein FAM32A	PANTHER	PTHR13282	UNCHARACTERIZED	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g00500.1	Cp4.1LG20g00500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus