Cp4.1LG19g09490 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g09490
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Translation initiation factor IF-2, putative isoform 1
Location	Cp4.1LG19: 5967933 .. 5970929 (+)
RNA-Seq Expression	Cp4.1LG19g09490
Synteny	Cp4.1LG19g09490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCCGCCCGATTTTCCCCACGTCTTAACTCGCTCCTCGGCCGGAGCGGAAGAGGAGAACACCTATTTCGCGGCGGTACACCGGCACGGTTTAATCCAATATTCCTGTCTCCAGTGGTTAGGTTTCGTCAAGTTTTGGAAACCAATTGGTAGAAATTCAGGTTATTTGAGTTTAATTTGTATTTGTTTATGTCAATTACCACTGCGAACTCCAATTACTGTCATTATGCACTACATCTAGGGGTTTGGAAGTTTTTGTTCTGTTTTCAATTTATGAAAATCCAGTGACAAAGTGTATGGATTCGTTTAAGAATGCCGCGAAGTGAGTAGTCGAAAGGATTCAAGAGAGAATTGTTGCTGAACATGGCAAGGCGAAAGGCGAAGAAAACTGTTAAGAAGACTAGCCCTAGGGAAAAAGAAAAGGACGAAGCAGAAAATGAGTTAAAAAGTGAGGAGCAAGCACCTTTGGTTTCTGACGAGGACGGTATGTTGAAATTGATTCTTTTTTTCACTTAATTTTGGGAAGGAAAATTGTTGTGTGTCTCTTTCAATGACAATTGTTCATTGAATTTATATTTTCTCGCTGCTTTTGCCTTCATTTGTGTATAGTTGAACGACATGCTGCTGCAATTCGCGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCAAGGAGAAACTTCCAAACTTGTCCATTTCTGGAAAAGGCGAAGTAGGAGAAATTGAAGTACAGCGGAAGGAAACTGAAAGTGAATTACGCGCCAATCCAATTGATGGAATGGATGTACACGCTTCTCTCTTACATCGTCTGTCCATAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTAAATGGATTTGAATTTTCCAGTAAATCAGGTACATGTAAATTTTGGATTATGGTGCATAAAACGAACTGCTAAGATGCTCCCTTATTTGATGCTTGTTTGCTGCAAATCACCGTATTTTCTCTACTGGTGGCAGTGAAAACAAATCCTTTCAATGTTGAGAGCCTGCAAATTCCGAGCTTGGTAAGTAATATTGCGTTTGACACCTTAAACTGTTTACTTCAAATTCTTTTCTTTAGATCAGTAAAATGAATGATACCATGTGAGCTCACAAAATTTGTTTAAGTTTGGCTATGTCTCTTGTTTCATGTTGTTTATTTGGTGAAGCTGAGATTGTCTTCTCGTCGGATGGTCATTCATAAGAAGATGCTCGGTATTGACTGATACATTTATTGATAATTCCTGCTTTTTAGGTTTTGGAGGCAGAGCCCTCGGATAGTATGATGCTTGGAATGACAGATATTCTCCAAACTCCTGGGGTTAGAATCTTCACGTTTTTTGCACACCGCTTATTGCATTAACTTTGTCTTGTTAATACCCTAGAGTTGTCTGTTATTGGTATTTTCCAGTATTTGTTACATTGTTGTTGACTCAAATCTAGGTACATAGTGGTGGTCTTGGTCAAAGGAACAAAGTTACTGTATTGGTAGCGTCTTGTTATCCATTATTCATATTTGTTGGATGATGGAAGTTCCATATCGGCTAATTTAGGGAATGATCATGGGTTTATAAGTGAGGAATACTAACTCTTTGGTGTGAGGTCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTAGTGTTCGTCTAATATGGTATCAGAGTCATGCCCTAAACTTTGTCGTGCCAATAGATTGGTAACTTCTCAAATATCGAACAAAGAACTCCAAAAGAAAAGGAGCCAAGCCTCTTCGAAGGCAGTAAAAAAATGACTAAGACTCCAAAGGAGTCGAGCCTCGATTAAGGGGAGGCGCACTTTGTTCGAGGGGAGGTATTGGATGTTGGAAGTCTCACTTCGGCTAATTTAGGGAATGATCATGGGTTTATAAGTGAGGAATACTAACTCCATTCGTGTGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTAAGCTCAAAGTGGACAATATCATACCATTCTGGAGAGTAGTGTTCGTCTAACGATATTTTTATTTTTATGTTCAATGCTTATCTCATTTCAAGTTATTATTATTATTATATATATATAAAAGAAACAATTTGATTGACAGAATGAAATTTAGAAAACAATTCAGGGAAAGTCTTGACCGGAGGTGCAAAAATGAATTCCAACGAGTACAAAAGTTAGTAAGGCTATGACTAGAAAACATCTTGAAGTTTACACTCAGCTTCAAGAGGTCTTATGGGGAATTGTTTAAAAAAAAGTCTTTTTATCTCTTTTGAAAAAGATCCGAGTAACATGTTTTGATAATTGTTTCTTCGAGTCTAATTTTGCTTTTATTTAGTGTATTCTACAATAAGCTAACTAGTTCTACTTTCATAGGTAAGTAACCAAAGATTGTCCATTGGAATGACACCGAGAACCCGAAGGCTTCCAAAGCCCGGTGAGATGCTTGTATCTATACACGGATCCCCCCTTGGTGTTTATAAGGAAGACAACATGGAAGCAATACATGGTACGTACATATAGGTCATATGTAGACAATGGAGCATTTCGACGCTTTAATTTGGAACTGTGAATATGTAGGCCAAATAAGTTGGTGGGTATATATACATTTATCATACTTCTGCATGTTTCTAATACATAAATTAATGTGCAGAATCAGATGAGGATTGATTAGCTCTGATTTGAGGCCACTTGACAGCTTGTCAAATGTAAAATTTCAAATTTCTATCAACCTTTTTGTATTGTATCCAACATTTTGATTACTCTCATATTAAGTGCTACTCGTACAAGGTGTATAACTAAGGTTTAGTGTTGCTTTACTCAAAGAAACGAGTTAAAGGTTATGATATCTGGGTTTAATTTGATTGCTTTTCATACGAAAAAGCATCGAT

mRNA sequence

TCCCCGCCCGATTTTCCCCACGTCTTAACTCGCTCCTCGGCCGGAGCGGAAGAGGAGAACACCTATTTCGCGGCGGTACACCGGCACGGTTTAATCCAATATTCCTGTCTCCAGTGGTTAGGTTTCGTCAAGTTTTGGAAACCAATTGGTAGAAATTCAGAATGCCGCGAAGTGAGTAGTCGAAAGGATTCAAGAGAGAATTGTTGCTGAACATGGCAAGGCGAAAGGCGAAGAAAACTGTTAAGAAGACTAGCCCTAGGGAAAAAGAAAAGGACGAAGCAGAAAATGAGTTAAAAAGTGAGGAGCAAGCACCTTTGGTTTCTGACGAGGACGTTGAACGACATGCTGCTGCAATTCGCGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCAAGGAGAAACTTCCAAACTTGTCCATTTCTGGAAAAGGCGAAGTAGGAGAAATTGAAGTACAGCGGAAGGAAACTGAAAGTGAATTACGCGCCAATCCAATTGATGGAATGGATGTACACGCTTCTCTCTTACATCGTCTGTCCATAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTAAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACAAATCCTTTCAATGTTGAGAGCCTGCAAATTCCGAGCTTGGTTTTGGAGGCAGAGCCCTCGGATAGTATGATGCTTGGAATGACAGATATTCTCCAAACTCCTGGGGTAAGTAACCAAAGATTGTCCATTGGAATGACACCGAGAACCCGAAGGCTTCCAAAGCCCGGTGAGATGCTTGTATCTATACACGGATCCCCCCTTGGTGTTTATAAGGAAGACAACATGGAAGCAATACATGAATCAGATGAGGATTGATTAGCTCTGATTTGAGGCCACTTGACAGCTTGTCAAATGTAAAATTTCAAATTTCTATCAACCTTTTTGTATTGTATCCAACATTTTGATTACTCTCATATTAAGTGCTACTCGTACAAGGTGTATAACTAAGGTTTAGTGTTGCTTTACTCAAAGAAACGAGTTAAAGGTTATGATATCTGGGTTTAATTTGATTGCTTTTCATACGAAAAAGCATCGAT

Coding sequence (CDS)

ATGGCAAGGCGAAAGGCGAAGAAAACTGTTAAGAAGACTAGCCCTAGGGAAAAAGAAAAGGACGAAGCAGAAAATGAGTTAAAAAGTGAGGAGCAAGCACCTTTGGTTTCTGACGAGGACGTTGAACGACATGCTGCTGCAATTCGCGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCAAGGAGAAACTTCCAAACTTGTCCATTTCTGGAAAAGGCGAAGTAGGAGAAATTGAAGTACAGCGGAAGGAAACTGAAAGTGAATTACGCGCCAATCCAATTGATGGAATGGATGTACACGCTTCTCTCTTACATCGTCTGTCCATAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTAAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACAAATCCTTTCAATGTTGAGAGCCTGCAAATTCCGAGCTTGGTTTTGGAGGCAGAGCCCTCGGATAGTATGATGCTTGGAATGACAGATATTCTCCAAACTCCTGGGGTAAGTAACCAAAGATTGTCCATTGGAATGACACCGAGAACCCGAAGGCTTCCAAAGCCCGGTGAGATGCTTGTATCTATACACGGATCCCCCCTTGGTGTTTATAAGGAAGACAACATGGAAGCAATACATGAATCAGATGAGGATTGA

Protein sequence

MARRKAKKTVKKTSPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPIDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED

Homology

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BLAST of Cp4.1LG19g09490 vs. NCBI nr
Match: XP_023518319.1 (uncharacterized protein LOC111781838 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 452 bits (1162), Expect = 1.03e-159
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MARRKAKKTVKKTSPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIERLI 60
           MARRKAKKTVKKTSPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIERLI
Sbjct: 1   MARRKAKKTVKKTSPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIERLI 60

Query: 61  TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPIDGM 120
           TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPIDGM
Sbjct: 61  TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPIDGM 120

Query: 121 DVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM 180
           DVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM
Sbjct: 121 DVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM 180

Query: 181 LGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED 240
           LGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED
Sbjct: 181 LGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED 240

[Close]

BLAST of Cp4.1LG19g09490 vs. NCBI nr
Match: XP_022962735.1 (uncharacterized protein LOC111463139 [Cucurbita moschata] >XP_022962736.1 uncharacterized protein LOC111463139 [Cucurbita moschata] >XP_022962737.1 uncharacterized protein LOC111463139 [Cucurbita moschata] >XP_022962739.1 uncharacterized protein LOC111463139 [Cucurbita moschata] >XP_022962740.1 uncharacterized protein LOC111463139 [Cucurbita moschata])

HSP 1 Score: 442 bits (1136), Expect = 9.48e-156
Identity = 235/240 (97.92%), Postives = 237/240 (98.75%), Query Frame = 0


Query: 1   MARRKAKKTVKKTSPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIERLI 60
           MARRKAKKTVKK+SPREKEKDEAENELKSEEQ PLVSDEDVERHAAAIRAIRDVEIERLI
Sbjct: 1   MARRKAKKTVKKSSPREKEKDEAENELKSEEQEPLVSDEDVERHAAAIRAIRDVEIERLI 60

Query: 61  TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPIDGM 120
           TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQ KETESELRANP+DGM
Sbjct: 61  TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVDGM 120

Query: 121 DVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM 180
           DVHASLL RLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM
Sbjct: 121 DVHASLLQRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM 180

Query: 181 LGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED 240
           LGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED
Sbjct: 181 LGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED 240

[Close]

BLAST of Cp4.1LG19g09490 vs. NCBI nr
Match: XP_023003233.1 (uncharacterized protein LOC111496903 [Cucurbita maxima] >XP_023003234.1 uncharacterized protein LOC111496903 [Cucurbita maxima] >XP_023003235.1 uncharacterized protein LOC111496903 [Cucurbita maxima] >XP_023003236.1 uncharacterized protein LOC111496903 [Cucurbita maxima])

HSP 1 Score: 441 bits (1133), Expect = 2.72e-155
Identity = 234/240 (97.50%), Postives = 236/240 (98.33%), Query Frame = 0


Query: 1   MARRKAKKTVKKTSPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIERLI 60
           MARRKAKK VKK+SPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIERLI
Sbjct: 1   MARRKAKKIVKKSSPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIERLI 60

Query: 61  TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPIDGM 120
           TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGK EVGEIEVQ KETESELRANP+DGM
Sbjct: 61  TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKSEVGEIEVQWKETESELRANPVDGM 120

Query: 121 DVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM 180
           DVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM
Sbjct: 121 DVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM 180

Query: 181 LGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED 240
           LGMTDILQTPG SNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED
Sbjct: 181 LGMTDILQTPGASNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED 240

[Close]

BLAST of Cp4.1LG19g09490 vs. NCBI nr
Match: KAG6594850.1 (hypothetical protein SDJN03_11403, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 437 bits (1125), Expect = 4.84e-154
Identity = 235/242 (97.11%), Postives = 237/242 (97.93%), Query Frame = 0


Query: 1   MARRKAKKTVKKTSP--REKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIER 60
           MARRKAKKTVK +SP  REK KDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIER
Sbjct: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPID 120
           LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQ KETESELRANP+D
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120

Query: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180
           GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS
Sbjct: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180

Query: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESD 240
           MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESD
Sbjct: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESD 240

[Close]

BLAST of Cp4.1LG19g09490 vs. NCBI nr
Match: KAG7026813.1 (hypothetical protein SDJN02_10820, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 427 bits (1098), Expect = 5.27e-150
Identity = 229/237 (96.62%), Postives = 231/237 (97.47%), Query Frame = 0


Query: 1   MARRKAKKTVKKTSP--REKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIER 60
           MARRKAKKTVK +SP  REK KDEAENELKSEEQAPLV DEDVERHAAAIRAIRDVEIER
Sbjct: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPID 120
           LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQ KETESELRANP+D
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120

Query: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180
           GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS
Sbjct: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180

Query: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 235
           MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 237

[Close]

BLAST of Cp4.1LG19g09490 vs. ExPASy TrEMBL
Match: A0A6J1HHY4 (uncharacterized protein LOC111463139 OS=Cucurbita moschata OX=3662 GN=LOC111463139 PE=4 SV=1)

HSP 1 Score: 442 bits (1136), Expect = 4.59e-156
Identity = 235/240 (97.92%), Postives = 237/240 (98.75%), Query Frame = 0


Query: 1   MARRKAKKTVKKTSPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIERLI 60
           MARRKAKKTVKK+SPREKEKDEAENELKSEEQ PLVSDEDVERHAAAIRAIRDVEIERLI
Sbjct: 1   MARRKAKKTVKKSSPREKEKDEAENELKSEEQEPLVSDEDVERHAAAIRAIRDVEIERLI 60

Query: 61  TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPIDGM 120
           TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQ KETESELRANP+DGM
Sbjct: 61  TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVDGM 120

Query: 121 DVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM 180
           DVHASLL RLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM
Sbjct: 121 DVHASLLQRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM 180

Query: 181 LGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED 240
           LGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED
Sbjct: 181 LGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED 240

[Close]

BLAST of Cp4.1LG19g09490 vs. ExPASy TrEMBL
Match: A0A6J1KR76 (uncharacterized protein LOC111496903 OS=Cucurbita maxima OX=3661 GN=LOC111496903 PE=4 SV=1)

HSP 1 Score: 441 bits (1133), Expect = 1.32e-155
Identity = 234/240 (97.50%), Postives = 236/240 (98.33%), Query Frame = 0


Query: 1   MARRKAKKTVKKTSPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIERLI 60
           MARRKAKK VKK+SPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIERLI
Sbjct: 1   MARRKAKKIVKKSSPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIERLI 60

Query: 61  TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPIDGM 120
           TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGK EVGEIEVQ KETESELRANP+DGM
Sbjct: 61  TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKSEVGEIEVQWKETESELRANPVDGM 120

Query: 121 DVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM 180
           DVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM
Sbjct: 121 DVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM 180

Query: 181 LGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED 240
           LGMTDILQTPG SNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED
Sbjct: 181 LGMTDILQTPGASNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDED 240

[Close]

BLAST of Cp4.1LG19g09490 vs. ExPASy TrEMBL
Match: A0A6J1BYE7 (uncharacterized protein LOC111005854 OS=Momordica charantia OX=3673 GN=LOC111005854 PE=4 SV=1)

HSP 1 Score: 369 bits (946), Expect = 3.66e-127
Identity = 201/239 (84.10%), Postives = 212/239 (88.70%), Query Frame = 0


Query: 1   MARRKAKKTVKKTSPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIERLI 60
           MARRKAKKT KK SP      EAENE K EEQAPLVS+EDVERHAAAIRAIRDVEIERLI
Sbjct: 1   MARRKAKKTAKKLSPSPVR--EAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLI 60

Query: 61  TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPIDGM 120
           TELRLLRSYFNKEQLQTP+LQFF+EKLPNLSIS  GE GEIEVQ K+   EL   P DG+
Sbjct: 61  TELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIEVQWKDAAGELHTKPADGI 120

Query: 121 DVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMM 180
           D+HASLLHRLSIAYPN SAGM+S+NGFEFSSKSVKTN FNVE+LQIPS VLE EPSDSMM
Sbjct: 121 DIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLE-EPSDSMM 180

Query: 181 LGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESDE 239
           LGM DILQTPGV NQRLSIGMTP+TRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHES+E
Sbjct: 181 LGMPDILQTPGVCNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE 236

[Close]

BLAST of Cp4.1LG19g09490 vs. ExPASy TrEMBL
Match: A0A6J1ILD3 (uncharacterized protein LOC111478496 OS=Cucurbita maxima OX=3661 GN=LOC111478496 PE=4 SV=1)

HSP 1 Score: 364 bits (934), Expect = 2.83e-125
Identity = 196/242 (80.99%), Postives = 217/242 (89.67%), Query Frame = 0


Query: 1   MARRKAKKTVKKTSPR--EKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIER 60
           MARRKAKK+VKK+SP    + KD + NELKSE+QA LVSDEDVERHA AIRAIRDVEIER
Sbjct: 1   MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPID 120
           LITELRLLRSYFNKEQLQTPLLQFF EKLP+LSIS +GE GEIEVQ K+TE EL  NP D
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFVEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180
           G+D+HASLLHRLS AYPN SAG+RS NGFEFSSKSVKTNPFNVE+LQIP+ VLE EPSD+
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGIRSFNGFEFSSKSVKTNPFNVENLQIPNFVLE-EPSDN 180

Query: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESD 240
           M+LGM D+LQTPG SNQRLSIGMTP+TRRLPKPGE++VSIHGSPLGVY+E NMEAIHES+
Sbjct: 181 MVLGMPDLLQTPGASNQRLSIGMTPKTRRLPKPGEVIVSIHGSPLGVYREYNMEAIHESE 240

[Close]

BLAST of Cp4.1LG19g09490 vs. ExPASy TrEMBL
Match: A0A1S4DWB9 (uncharacterized protein LOC103489436 OS=Cucumis melo OX=3656 GN=LOC103489436 PE=4 SV=1)

HSP 1 Score: 353 bits (905), Expect = 5.97e-121
Identity = 193/241 (80.08%), Postives = 212/241 (87.97%), Query Frame = 0


Query: 1   MARRKAKKTVKKTSPREKE--KDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIER 60
           MARRKAKKTVKK+SP      KDEA +++K+       SDEDVERHAAAIRAIRDVEIER
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTH------SDEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPID 120
           LITELRLLRSYFNKEQLQTPLLQFF+EKLP+LSIS +G+ GEIEVQ K+TE EL  NP D
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180
           G+D+HASLLHRLS AYP  SAGMRS NGFEFSSKSVKTNPFN E+LQIP+ VLE EPSD+
Sbjct: 121 GVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLE-EPSDN 180

Query: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESD 239
           M+LGM DILQTPG+SNQRLSIGMTP+TRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHES+
Sbjct: 181 MVLGMPDILQTPGISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESE 234

[Close]

BLAST of Cp4.1LG19g09490 vs. TAIR 10
Match: AT4G39630.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-47
Identity = 120/240 (50.00%), Postives = 167/240 (69.58%), Query Frame = 0


Query: 1   MARRKAKKTVKKTSPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIERLI 60
           M +RKAK+ VK T   E+++++ E  ++ EE+     DE+VER  AAIRAIRDVEIE+++
Sbjct: 1   MPKRKAKECVKLT---EEDRND-EKRIRIEEKKEDFVDEEVERQIAAIRAIRDVEIEQML 60

Query: 61  TELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPIDGM 120
           T LRLLRSYF +EQL TP+L FFKE LP+LSIS   E GEIE++ ++   +  A   +G+
Sbjct: 61  TALRLLRSYFTEEQLHTPVLDFFKENLPDLSISRNEETGEIELKWRDENGDSFAGNENGV 120

Query: 121 DVHASLLHRLSIAYPN-YSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSM 180
           D++ S+L RLS+ + + YS    SL G++    +VK N    ++ Q+ +LV +   S++ 
Sbjct: 121 DMNYSILKRLSMRFTDLYSRS--SLGGYDLPD-NVKANLLGTDNPQLDNLVFQG-TSENQ 180

Query: 181 MLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIHESD 239
           ML   D  QTPGV+ QRLS GMTP+T RLPK GEM++S+HGSPLGVYKED NM AI+E +
Sbjct: 181 MLPGHDAFQTPGVNGQRLSFGMTPKTLRLPKAGEMMLSVHGSPLGVYKEDHNMGAINEEN 232

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g09490 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG19g09490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518319.1	1.03e-159	100.00	uncharacterized protein LOC111781838 [Cucurbita pepo subsp. pepo]	[more]
XP_022962735.1	9.48e-156	97.92	uncharacterized protein LOC111463139 [Cucurbita moschata] >XP_022962736.1 unchar...	[more]
XP_023003233.1	2.72e-155	97.50	uncharacterized protein LOC111496903 [Cucurbita maxima] >XP_023003234.1 uncharac...	[more]
KAG6594850.1	4.84e-154	97.11	hypothetical protein SDJN03_11403, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7026813.1	5.27e-150	96.62	hypothetical protein SDJN02_10820, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG19g09490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HHY4	4.59e-156	97.92	uncharacterized protein LOC111463139 OS=Cucurbita moschata OX=3662 GN=LOC1114631...	[more]
A0A6J1KR76	1.32e-155	97.50	uncharacterized protein LOC111496903 OS=Cucurbita maxima OX=3661 GN=LOC111496903...	[more]
A0A6J1BYE7	3.66e-127	84.10	uncharacterized protein LOC111005854 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1ILD3	2.83e-125	80.99	uncharacterized protein LOC111478496 OS=Cucurbita maxima OX=3661 GN=LOC111478496...	[more]
A0A1S4DWB9	5.97e-121	80.08	uncharacterized protein LOC103489436 OS=Cucumis melo OX=3656 GN=LOC103489436 PE=...	[more]

BLAST of Cp4.1LG19g09490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39630.1	1.2e-47	50.00	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	PANTHER	PTHR37248	TRANSLATION INITIATION FACTOR	coord: 1..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g09490.1	Cp4.1LG19g09490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003743	translation initiation factor activity