Cp4.1LG19g08670 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG19g08670
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRSN1_7TM domain-containing protein
LocationCp4.1LG19: 6448967 .. 6450012 (-)
RNA-Seq ExpressionCp4.1LG19g08670
SyntenyCp4.1LG19g08670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCAAAGAGTTTATGTTGTATATGGGGAGAAAATGTGGGTTGACCAAATAATTGTAGGGAGAGGAGAAGAAGTAGGAGGAAATCAAATAAACTCAGGTTTGTAATCACTGTGTTGCCCAAGTAGGACCAAATCACAAAGAGAAAAACACTACAACCGCTCTTGGCCAAGTGATCACTGTCTTTCCTTGTATCTCTCCAACATGTGGCTTATCAATTTCTTTAACCTATCATAAATCAATAGCTACCTATGTTCGATCATCATACTCAACTTGCTATCGTTCTCTTTTCACTTGTGATACTCGTACGATAAGAACAAGAACAAGAACAAGAACAAGAACAAGATGAAGAAGATGCATCACATACCAGCTAAAAGCAATCTCGTTGATTCAAGTCCTGAAACTGACCATAATGCCCCCCCTCTTTGCCCTAAGCCCCGCCGCCTCCGTCCCGCCATCCCTAGTTTCCTCGCCCCGTTTCGATGCGCCCATCGCATTCATAGGTCATTCTCGATAAAATTTTATGTTCTGACTTTATATGTTGATATTCTTCAAGCGTATGTATGGCTTAATTTACTCTTGTCTTTCACCAGCCAATCTAGTAGTGATCCGAGAAGTGCAATCCTCAATATCATTGCGGGAAAGGTAAGGAAGTTGATTTCTCGGTTTCTCGATTCCTCGATTCCCTGATTTGTGAATGAGTTATGAGAAAACTATGAATGTTTGTGTTTGTAGGGTGTTGAAGGGAGAGATTGTTTGTGCTTGAATTGTTACCCGTCGTGTTATTCGGGATCTCCGCCAGGAAGAACAGGGAATCCGCTGGTTCAAGACGTGTATTTTCTTCATCAAGTGGAGATTCAATCGCCATTTTCGAGAACCTAAGCTCTCTTAGAAGTTCAGTTTGACCTCTGTTTCCCCCCACGTGAACGAAAGAACAAAGACGTCATTGAAGAAGTGAACAGGGATATACTGGTTGTTGTTTTATGTAGCTTTGTTAGTGAGTTTACTTACTTGTACAATCTTGATTTTCTTCAATTGTGCATCTTCGT

mRNA sequence

ATCCAAAGAGTTTATGTTGTATATGGGGAGAAAATGTGGGTTGACCAAATAATTGTAGGGAGAGGAGAAGAAGTAGGAGGAAATCAAATAAACTCAGGTTTGTAATCACTGTGTTGCCCAAGTAGGACCAAATCACAAAGAGAAAAACACTACAACCGCTCTTGGCCAAGTGATCACTGTCTTTCCTTGTATCTCTCCAACATGTGGCTTATCAATTTCTTTAACCTATCATAAATCAATAGCTACCTATGTTCGATCATCATACTCAACTTGCTATCGTTCTCTTTTCACTTGTGATACTCGTACGATAAGAACAAGAACAAGAACAAGAACAAGAACAAGATGAAGAAGATGCATCACATACCAGCTAAAAGCAATCTCGTTGATTCAAGTCCTGAAACTGACCATAATGCCCCCCCTCTTTGCCCTAAGCCCCGCCGCCTCCGTCCCGCCATCCCTAGTTTCCTCGCCCCGTTTCGATGCGCCCATCGCATTCATAGCCAATCTAGTAGTGATCCGAGAAGTGCAATCCTCAATATCATTGCGGGAAAGGGTGTTGAAGGGAGAGATTGTTTGTGCTTGAATTGTTACCCGTCGTGTTATTCGGGATCTCCGCCAGGAAGAACAGGGAATCCGCTGGTTCAAGACGTGTATTTTCTTCATCAAGTGGAGATTCAATCGCCATTTTCGAGAACCTAAGCTCTCTTAGAAGTTCAGTTTGACCTCTGTTTCCCCCCACGTGAACGAAAGAACAAAGACGTCATTGAAGAAGTGAACAGGGATATACTGGTTGTTGTTTTATGTAGCTTTGTTAGTGAGTTTACTTACTTGTACAATCTTGATTTTCTTCAATTGTGCATCTTCGT

Coding sequence (CDS)

ATGAAGAAGATGCATCACATACCAGCTAAAAGCAATCTCGTTGATTCAAGTCCTGAAACTGACCATAATGCCCCCCCTCTTTGCCCTAAGCCCCGCCGCCTCCGTCCCGCCATCCCTAGTTTCCTCGCCCCGTTTCGATGCGCCCATCGCATTCATAGCCAATCTAGTAGTGATCCGAGAAGTGCAATCCTCAATATCATTGCGGGAAAGGGTGTTGAAGGGAGAGATTGTTTGTGCTTGAATTGTTACCCGTCGTGTTATTCGGGATCTCCGCCAGGAAGAACAGGGAATCCGCTGGTTCAAGACGTGTATTTTCTTCATCAAGTGGAGATTCAATCGCCATTTTCGAGAACCTAA

Protein sequence

MKKMHHIPAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT
Homology
BLAST of Cp4.1LG19g08670 vs. NCBI nr
Match: XP_023518149.1 (uncharacterized protein LOC111781694 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 252 bits (643), Expect = 1.37e-84
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query: 1   MKKMHHIPAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPR 60
           MKKMHHIPAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPR
Sbjct: 1   MKKMHHIPAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPR 60

Query: 61  SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118
           SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT
Sbjct: 61  SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118

BLAST of Cp4.1LG19g08670 vs. NCBI nr
Match: KAG6594753.1 (hypothetical protein SDJN03_11306, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247 bits (630), Expect = 1.32e-82
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0

Query: 1   MKKMHHIPAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPR 60
           MK MHHI AKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPR
Sbjct: 1   MKNMHHIAAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPR 60

Query: 61  SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118
           SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT
Sbjct: 61  SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118

BLAST of Cp4.1LG19g08670 vs. NCBI nr
Match: KAG7026720.1 (hypothetical protein SDJN02_10724, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246 bits (628), Expect = 2.66e-82
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 0

Query: 1   MKKMHHIPAKSNLVDSSPETDHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPR 60
           MK MHHI AKSNLVDSSPETDHNAPPLCPKPRR+RPAIPSFLAPFRCAHRIHSQSSSDPR
Sbjct: 1   MKNMHHIAAKSNLVDSSPETDHNAPPLCPKPRRIRPAIPSFLAPFRCAHRIHSQSSSDPR 60

Query: 61  SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118
           SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT
Sbjct: 61  SAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118

BLAST of Cp4.1LG19g08670 vs. NCBI nr
Match: XP_038881848.1 (uncharacterized protein LOC120073212 [Benincasa hispida])

HSP 1 Score: 188 bits (477), Expect = 2.23e-58
Identity = 91/123 (73.98%), Postives = 98/123 (79.67%), Query Frame = 0

Query: 2   KKMHHIPAKSNLVDSSPETD------HNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQS 61
           K+M+HI  KSNLVDS  +TD      +N+ PLCPKPRRL P IPSFLAP  CAH +HSQS
Sbjct: 46  KEMYHIATKSNLVDSGLQTDQLGFKDNNSLPLCPKPRRLEPVIPSFLAPLGCAHHVHSQS 105

Query: 62  SSDPRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPF 118
           S D RS ILNIIAGK VEGRDCLC  CYPSCYSGSPPGRT NPLV DVYFLHQ+EI SPF
Sbjct: 106 SGDTRSGILNIIAGKHVEGRDCLCSGCYPSCYSGSPPGRTENPLVHDVYFLHQMEIHSPF 165

BLAST of Cp4.1LG19g08670 vs. NCBI nr
Match: XP_022133306.1 (uncharacterized protein LOC111005918 [Momordica charantia])

HSP 1 Score: 181 bits (459), Expect = 2.56e-56
Identity = 87/115 (75.65%), Postives = 94/115 (81.74%), Query Frame = 0

Query: 6   HIPAKSNLVDSSPETDHNAP--PLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPRSAI 65
           HI  KSNLVDSSPET++N    PLCPKPRR RP IP+FL P RCA RIHSQSS + R+ I
Sbjct: 5   HIATKSNLVDSSPETNNNVNCLPLCPKPRRPRPTIPNFLVPLRCADRIHSQSSGEGRNGI 64

Query: 66  LNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118
           LNIIAGK VEGRDCLC NCYPSCYSGSPP RT NPLV DVYFLHQ+E+ SPFS T
Sbjct: 65  LNIIAGKNVEGRDCLCSNCYPSCYSGSPPRRTENPLVHDVYFLHQMELLSPFSHT 119

BLAST of Cp4.1LG19g08670 vs. ExPASy TrEMBL
Match: A0A6J1BUP6 (uncharacterized protein LOC111005918 OS=Momordica charantia OX=3673 GN=LOC111005918 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 1.24e-56
Identity = 87/115 (75.65%), Postives = 94/115 (81.74%), Query Frame = 0

Query: 6   HIPAKSNLVDSSPETDHNAP--PLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSDPRSAI 65
           HI  KSNLVDSSPET++N    PLCPKPRR RP IP+FL P RCA RIHSQSS + R+ I
Sbjct: 5   HIATKSNLVDSSPETNNNVNCLPLCPKPRRPRPTIPNFLVPLRCADRIHSQSSGEGRNGI 64

Query: 66  LNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118
           LNIIAGK VEGRDCLC NCYPSCYSGSPP RT NPLV DVYFLHQ+E+ SPFS T
Sbjct: 65  LNIIAGKNVEGRDCLCSNCYPSCYSGSPPRRTENPLVHDVYFLHQMELLSPFSHT 119

BLAST of Cp4.1LG19g08670 vs. ExPASy TrEMBL
Match: A0A0A0KHD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507270 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 1.32e-56
Identity = 90/121 (74.38%), Postives = 93/121 (76.86%), Query Frame = 0

Query: 4   MHHIPAKSNLVDSSPET------DHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSS 63
           MHH   KSNLVDS  ET      D+N  PLCPKPRRL PAIPSFLAP  CAH IHSQSS 
Sbjct: 1   MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG 60

Query: 64  DPRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSR 118
           D RS ILNII GK VEGRDCL   CYPSCYSGSPPGRT NPLV D+YFLHQ+EI SPFSR
Sbjct: 61  DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR 120

BLAST of Cp4.1LG19g08670 vs. ExPASy TrEMBL
Match: A0A5D3CKV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00940 PE=4 SV=1)

HSP 1 Score: 178 bits (452), Expect = 1.54e-55
Identity = 87/121 (71.90%), Postives = 92/121 (76.03%), Query Frame = 0

Query: 4   MHHIPAKSNLVDSSPET------DHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSS 63
           MHHI  KSNLVDS  ET      D+N  PLCPKPRRL PAIPSFL P RCAH IHSQSS 
Sbjct: 1   MHHIATKSNLVDSDLETNQPGFKDNNGLPLCPKPRRLEPAIPSFLVPLRCAHHIHSQSSG 60

Query: 64  DPRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSR 118
           D RS +LNII GK VE RDC    CYPSCYSGSPPGRT NPLV D+YFLHQ+EI+S FSR
Sbjct: 61  DSRSEVLNIIEGKNVEARDCFSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIRSSFSR 120

BLAST of Cp4.1LG19g08670 vs. ExPASy TrEMBL
Match: A0A6P5YNC3 (uncharacterized protein LOC111293295 OS=Durio zibethinus OX=66656 GN=LOC111293295 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 3.68e-42
Identity = 70/120 (58.33%), Postives = 86/120 (71.67%), Query Frame = 0

Query: 4   MHHIPAKSNLVDSSPETDH-----NAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSSD 63
           M H+P KSNL+DS  ET       +  PLCPKPRR+ PAIP FL P +C    HSQ +SD
Sbjct: 49  MQHLPVKSNLLDSDSETTKFGFGGHVQPLCPKPRRIGPAIPEFLKPLKCNK--HSQPNSD 108

Query: 64  PRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSRT 118
            RS  LN+IA K ++GR+  C  C PSCY+GSPPGRTGNPLV DV+F+HQ+E+ SPF+RT
Sbjct: 109 GRSGALNMIAEKTIDGRESACTGCSPSCYAGSPPGRTGNPLVHDVHFIHQMELLSPFTRT 166

BLAST of Cp4.1LG19g08670 vs. ExPASy TrEMBL
Match: A0A1R3ILH6 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_22487 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 5.26e-42
Identity = 68/122 (55.74%), Postives = 84/122 (68.85%), Query Frame = 0

Query: 4   MHHIPAKSNLVDSSPETDHN-------APPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSS 63
           M H P KSNL+DS  +T H+         PLCPKPRRL P +P FL P RC    HSQ +
Sbjct: 1   MQHFPVKSNLLDSGSDTTHHHLAFGATEQPLCPKPRRLGPPVPDFLNPLRCTK--HSQPN 60

Query: 64  SDPRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFS 118
           +D R  +LN+I  K ++GR+  C  C+PSCY+GSPPGRTGNPLV DV F+HQ+EI SPF+
Sbjct: 61  ADGRGGVLNMITEKTIDGRESSCSGCWPSCYAGSPPGRTGNPLVNDVQFIHQMEILSPFT 120

BLAST of Cp4.1LG19g08670 vs. TAIR 10
Match: AT5G16110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.8e-07
Identity = 42/128 (32.81%), Postives = 59/128 (46.09%), Query Frame = 0

Query: 1   MKKMHHIPAKSNLVDSSPET---DHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIH-SQSS 60
           +KKM+H   + N   S  E    D     +CPKPRR+     + + P     R+H SQ++
Sbjct: 64  VKKMNHCNLQQNAFMSREEMMGFDRKDLVVCPKPRRVGLLANNVIRPL----RLHMSQAA 123

Query: 61  SD-----PRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYF----LH 116
           +D       + +L II  K   G     L+  P  + GSPP R  NPL QD  F    L+
Sbjct: 124 ADLCDSKAGAELLEIIRRKEDNGTIGQLLSSSPPYFPGSPPSRAANPLAQDARFRDEKLN 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023518149.11.37e-84100.00uncharacterized protein LOC111781694 [Cucurbita pepo subsp. pepo][more]
KAG6594753.11.32e-8298.31hypothetical protein SDJN03_11306, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7026720.12.66e-8297.46hypothetical protein SDJN02_10724, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038881848.12.23e-5873.98uncharacterized protein LOC120073212 [Benincasa hispida][more]
XP_022133306.12.56e-5675.65uncharacterized protein LOC111005918 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1BUP61.24e-5675.65uncharacterized protein LOC111005918 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A0A0KHD11.32e-5674.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507270 PE=4 SV=1[more]
A0A5D3CKV61.54e-5571.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6P5YNC33.68e-4258.33uncharacterized protein LOC111293295 OS=Durio zibethinus OX=66656 GN=LOC11129329... [more]
A0A1R3ILH65.26e-4255.74Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_22487 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G16110.13.8e-0732.81unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availablePANTHERPTHR33384:SF17BNAC07G32200D PROTEINcoord: 4..118
NoneNo IPR availablePANTHERPTHR33384EXPRESSED PROTEINcoord: 4..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g08670.1Cp4.1LG19g08670.1mRNA