Cp4.1LG19g08500 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG19g08500
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionheterogeneous nuclear ribonucleoprotein H2-like isoform X1
LocationCp4.1LG19: 6539530 .. 6542210 (-)
RNA-Seq ExpressionCp4.1LG19g08500
SyntenyCp4.1LG19g08500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATCGTTTAGGGTTAGAGAGAGGGAGAGAGATCGTGTCGTTTTTGTTCAATTTGGGTGGTGGAATCGGGAGGCAAATCGAAGTTCAGCATCCTCCGTAATCTTGGTTAGGGTTTGTTTCTTCCATTCTTTTTCCCGTTGAATCCACTCCTTTCTTGTTGACAATCCCTCCAATTTACTCCTTTTCGTTCGATTATCAGAGTAGCTTTTGGAGATTGCAGACAATCATGTACGGACCTAGAGGGTAAGTCGAGAAATTTTGACCTTGTTTCTGTCTCTTCCCAGTCGGGCTTTCTGGTTTTGTTTCTTTGTTGTTGTGTTTCTTCTGACGTTCCGCTGGATTATTTGTTTTGTTGTTCCATTGGAATATCTGGGGTTTTGATGGATTCTGCCTGAAATTGCGTGTTTTAGATTGAGGGTGGGGGATCGAGGAATGAGTTCCTCTGTCCGCTTCTTTTAGGTGTTTTGATTGTATGCAAACACTGCCTAATGGGTTTTCCAGTAGAACATATTCTTGAAAAACAATATCCTTTGGTAATATAATCTCAATTAAGTGTTTAAAGAAAAAGAAGGTGCGATTTATGAAGCCTTCCATTTGTTGCATGTTCTTTGCATGAATCTCCCCTTTAAATTTAAACTTTAGAATAAACTCATCCTAGCCGGTGGCTTTTCTAGCCCTTCCTTGAATCAGGTAGATTATCTGGAGTCTTGTCATATAATGGCATATATCTGAGTCATGTTAGGATTTGATTTTCTTTCTCAGTTTCAACCAGAAAGCAATAATTTGAATGTTGAGCAGTGTCTCATGAGCTCTCTTTTCTATACCACTGTTAAATTTTGAAGTTTTTGTGATTTTGTTGGTTTATTAGTGTTCTCATTTATAGTTTTTACTTTAACTTGAGTGCTGATTTTCGTATAAATATGGGACAAACATTTTTTACTACTTGATGAGTAGATGTTCATTGAGCCTCAAAATGACTTTTTGCTGCTACTTTTTGAAGTAATTATTTATTCCATATACAGTTAAATTGATTTGTTTATAGGGGTGGTAATAGCATGTAACTTAATTGACCATAAATCGCGCACACCAATAGGTTTTAGAGGTATAGGTTGGGCTTGGTTTTATTAACTTGCTTGAGTGGGGATTTTCCTTTTCTTTTCTGGGTTGGTAAATGAAGGGCAATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGTCGGATTTCAACCATATGGCTATGGGAGTTTTCCTCCTACTCATGCCTTTCCTGTGGTTCGCCTTAGAGGGCTTCCCTTCAACTGCTCTGACATTGACATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTACTGGTCAACAAGAATGGGCGGTTCATGGGAGAGGCCTTTGTTGTCTTCGCAGGCTCTGTGCAAGTTGAGTTCGCATTGCAACGGGATCGACAAAATATGGGGCGTAGGTACGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTATAATGCCATTGCTGCTGAAGTAAACTACGAGGGCATTTATGATAACGACTACCATGGAAGTCCTCCTCCTCGACAAAAGAGGTTCAGCGACAAGGACCAGATGGAATACACTGAGATACTGAAGCTGCGTGGTCTGCCTTTCTCTGTGAAAAAATCCGACATTATTGAGTTTTTTGGAGAGTTTGACCTCGCTGAAGATAGGATACATATTGCAAGCCGTCCAGATGGGAAGGCTACTGGTGAGGCTTACGTTGAGTTTGCTTCAGAAGAGGAGGCAAAGAGAGCAATGAGTAAGGACAAGATGACAATTGGGTCGAGATATGTGGAGTTGTTTCCTTCAACCTCAAATGAGGCTAGAAGAGCTGAGTCAAGGTCAAGACAGTGAGTAAGTAGGTGATTCGGTCATGGAGTCTCTGAAGTTCTCTGTTGCTATATTTTTGCACCGAGGCTTTGCTGTTCTTGTAATTTTCCAAATTTGTAGGATGACGTTTTATCGTTGTGGAGTTAATCGATACTGCATTTTGAGATTGAAGTTGTTAGCCCTATGAGTTCAAAACTTGGTTAAAACACCGACCTTCTCCCATTCTTTGCATCTGTCATTGAGCTTCTCTTTTCTCTGCGGGGTTTACTTGAAAATGAGATTAGTTCTAGGAGGTCACAGTTGCTGAAACTCAATCATTCAAGTGCCACCTCTCGTACATGCGGTGAGGGTCTTTGTTTAGACTCATTTAAATAAGTAAACGCCCTTTAGATCCTGACATTTAATTATGTATGAGAATGTTGTGGCTATTCAGGAATAATCTTCAATAAGTTTTATAATGAGCTCCGCCTTGAGTTAAAAAACAGGGTCTGAACTGGGAAGAGGAAACTTTGCTGACCCACAAAAAGTAGGAATACCTTTGATGTATGAACGTTGAAGAGATGGTAGAATTGAAACTTTCAAAATCGATAAAGTTTAAATTACATTCGAGCCTTTATATGAAGCTGTATGAAAAGTTATATGTTCGAGATTGATATTGCACACGTTCGGCCATTCTTTTGGAGGATTTGAATTTATCATTTTGTTTATAGATATTACCTATCATGTAGAGATTTGAATGTAAACTTCTCCGAG

mRNA sequence

GTATCGTTTAGGGTTAGAGAGAGGGAGAGAGATCGTGTCGTTTTTGTTCAATTTGGGTGGTGGAATCGGGAGGCAAATCGAAGTTCAGCATCCTCCGTAATCTTGAGTAGCTTTTGGAGATTGCAGACAATCATGTACGGACCTAGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGTCGGATTTCAACCATATGGCTATGGGAGTTTTCCTCCTACTCATGCCTTTCCTGTGGTTCGCCTTAGAGGGCTTCCCTTCAACTGCTCTGACATTGACATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTACTGGTCAACAAGAATGGGCGGTTCATGGGAGAGGCCTTTGTTGTCTTCGCAGGCTCTGTGCAAGTTGAGTTCGCATTGCAACGGGATCGACAAAATATGGGGCGTAGGTACGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTATAATGCCATTGCTGCTGAAGTAAACTACGAGGGCATTTATGATAACGACTACCATGGAAGTCCTCCTCCTCGACAAAAGAGGTTCAGCGACAAGGACCAGATGGAATACACTGAGATACTGAAGCTGCGTGGTCTGCCTTTCTCTGTGAAAAAATCCGACATTATTGAGTTTTTTGGAGAGTTTGACCTCGCTGAAGATAGGATACATATTGCAAGCCGTCCAGATGGGAAGGCTACTGGTGAGGCTTACGTTGAGTTTGCTTCAGAAGAGGAGGCAAAGAGAGCAATGAGTAAGGACAAGATGACAATTGGGTCGAGATATGTGGAGTTGTTTCCTTCAACCTCAAATGAGGCTAGAAGAGCTGAGTCAAGGTCAAGACAGTGAGTAAGTAGGTGATTCGGTCATGGAGTCTCTGAAGTTCTCTGTTGCTATATTTTTGCACCGAGGCTTTGCTGTTCTTGTAATTTTCCAAATTTGTAGGATGACGTTTTATCGTTGTGGAGTTAATCGATACTGCATTTTGAGATTGAAGTTGTTAGCCCTATGAGTTCAAAACTTGGTTAAAACACCGACCTTCTCCCATTCTTTGCATCTGTCATTGAGCTTCTCTTTTCTCTGCGGGGTTTACTTGAAAATGAGATTAGTTCTAGGAGGTCACAGTTGCTGAAACTCAATCATTCAAGTGCCACCTCTCGTACATGCGGTGAGGGTCTTTGTTTAGACTCATTTAAATAAGTAAACGCCCTTTAGATCCTGACATTTAATTATGTATGAGAATGTTGTGGCTATTCAGGAATAATCTTCAATAAGTTTTATAATGAGCTCCGCCTTGAGTTAAAAAACAGGGTCTGAACTGGGAAGAGGAAACTTTGCTGACCCACAAAAAGTAGGAATACCTTTGATGTATGAACGTTGAAGAGATGGTAGAATTGAAACTTTCAAAATCGATAAAGTTTAAATTACATTCGAGCCTTTATATGAAGCTGTATGAAAAGTTATATGTTCGAGATTGATATTGCACACGTTCGGCCATTCTTTTGGAGGATTTGAATTTATCATTTTGTTTATAGATATTACCTATCATGTAGAGATTTGAATGTAAACTTCTCCGAG

Coding sequence (CDS)

ATGTACGGACCTAGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGTCGGATTTCAACCATATGGCTATGGGAGTTTTCCTCCTACTCATGCCTTTCCTGTGGTTCGCCTTAGAGGGCTTCCCTTCAACTGCTCTGACATTGACATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTACTGGTCAACAAGAATGGGCGGTTCATGGGAGAGGCCTTTGTTGTCTTCGCAGGCTCTGTGCAAGTTGAGTTCGCATTGCAACGGGATCGACAAAATATGGGGCGTAGGTACGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTATAATGCCATTGCTGCTGAAGTAAACTACGAGGGCATTTATGATAACGACTACCATGGAAGTCCTCCTCCTCGACAAAAGAGGTTCAGCGACAAGGACCAGATGGAATACACTGAGATACTGAAGCTGCGTGGTCTGCCTTTCTCTGTGAAAAAATCCGACATTATTGAGTTTTTTGGAGAGTTTGACCTCGCTGAAGATAGGATACATATTGCAAGCCGTCCAGATGGGAAGGCTACTGGTGAGGCTTACGTTGAGTTTGCTTCAGAAGAGGAGGCAAAGAGAGCAATGAGTAAGGACAAGATGACAATTGGGTCGAGATATGTGGAGTTGTTTCCTTCAACCTCAAATGAGGCTAGAAGAGCTGAGTCAAGGTCAAGACAGTGA

Protein sequence

MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELFPSTSNEARRAESRSRQ
Homology
[Close]
BLAST of Cp4.1LG19g08500 vs. ExPASy Swiss-Prot
Match: Q5E9J1 (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-26
Identity = 72/202 (35.64%), Postives = 108/202 (53.47%), Query Frame = 0 

Query: 59  VVRLRGLPFNCSDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFAL 118
           VV+LRGLP++CS  D+  F +   I D +     +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 119 QRDRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 178
           ++DR++MG RY+EVF+  R +    +              H  P        +       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLK-------------HSGP--------NSADTAND 131

Query: 179 EILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMS 238
             ++LRGLPF   K +II+FF   ++  + I +   P+GK TGEA+V+FAS+E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 239 KDKMTIGSRYVELFPSTSNEAR 256
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]
BLAST of Cp4.1LG19g08500 vs. ExPASy Swiss-Prot
Match: Q3US41 (Epithelial splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Esrp1 PE=1 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-26
Identity = 75/208 (36.06%), Postives = 110/208 (52.88%), Query Frame = 0 

Query: 59  VVRLRGLPFNCSDIDIFKFFAGLDIVD---VLLVNKNGRFMGEAFVVFAGSVQVEFALQR 118
           VVR RGLP+  SD DI +FF GL+I      L +N  GR  GEA V F      + ALQR
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284

Query: 119 DRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEI 178
            + +MG RY+EV++   +D+        N                  +F  K   E   I
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSK---ENQVI 344

Query: 179 LKLRGLPFSVKKSDIIEFFGE---FDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAM 238
           +++RGLPF+    +++ FFG+       ++ I   + PDG+ TG+A+V FA EE A+ A+
Sbjct: 345 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 404

Query: 239 SKDKMTIGSRYVELFPSTSNEARRAESR 261
            K K  +G RY+ELF ST+ E ++  +R
Sbjct: 405 RKHKELLGKRYIELFRSTAAEVQQVLNR 414

[Close]
BLAST of Cp4.1LG19g08500 vs. ExPASy Swiss-Prot
Match: P52597 (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-26
Identity = 71/202 (35.15%), Postives = 107/202 (52.97%), Query Frame = 0 

Query: 59  VVRLRGLPFNCSDIDIFKFFAGLDIVD-----VLLVNKNGRFMGEAFVVFAGSVQVEFAL 118
           VV+LRGLP++CS  D+  F +   I D       +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 119 QRDRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 178
           ++DR++MG RY+EVF+  R +    +              H  P        +       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLK-------------HSGP--------NSADSAND 131

Query: 179 EILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMS 238
             ++LRGLPF   K +I++FF   ++  + I +   P+GK TGEA+V+FAS+E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 239 KDKMTIGSRYVELFPSTSNEAR 256
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]
BLAST of Cp4.1LG19g08500 vs. ExPASy Swiss-Prot
Match: Q60HC3 (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-26
Identity = 71/202 (35.15%), Postives = 107/202 (52.97%), Query Frame = 0 

Query: 59  VVRLRGLPFNCSDIDIFKFFAGLDIVD-----VLLVNKNGRFMGEAFVVFAGSVQVEFAL 118
           VV+LRGLP++CS  D+  F +   I D       +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 119 QRDRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 178
           ++DR++MG RY+EVF+  R +    +              H  P        +       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLK-------------HSGP--------NSADSAND 131

Query: 179 EILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMS 238
             ++LRGLPF   K +I++FF   ++  + I +   P+GK TGEA+V+FAS+E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 239 KDKMTIGSRYVELFPSTSNEAR 256
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]
BLAST of Cp4.1LG19g08500 vs. ExPASy Swiss-Prot
Match: Q9Z2X1 (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-26
Identity = 71/202 (35.15%), Postives = 108/202 (53.47%), Query Frame = 0 

Query: 59  VVRLRGLPFNCSDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFAL 118
           VV+LRGLP++CS  D+  F +   I D +     +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 119 QRDRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 178
           ++DR++MG RY+EVF+  R +    +              H  P        +       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLK-------------HSGP--------NSADSAND 131

Query: 179 EILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMS 238
             ++LRGLPF   K +I++FF   ++  + I +   P+GK TGEA+V+FAS+E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 239 KDKMTIGSRYVELFPSTSNEAR 256
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]
BLAST of Cp4.1LG19g08500 vs. NCBI nr
Match: XP_022926595.1 (heterogeneous nuclear ribonucleoprotein H2-like isoform X1 [Cucurbita moschata] >XP_022926596.1 heterogeneous nuclear ribonucleoprotein H2-like isoform X1 [Cucurbita moschata] >XP_022926597.1 heterogeneous nuclear ribonucleoprotein H2-like isoform X1 [Cucurbita moschata] >XP_023518918.1 heterogeneous nuclear ribonucleoprotein H2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023518919.1 heterogeneous nuclear ribonucleoprotein H2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 529 bits (1363), Expect = 1.38e-189
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0 

Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240
           LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG
Sbjct: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTSNEARRAESRSRQ 263
           SRYVELFPSTSNEARRAESRSRQ
Sbjct: 241 SRYVELFPSTSNEARRAESRSRQ 263

[Close]
BLAST of Cp4.1LG19g08500 vs. NCBI nr
Match: XP_023003923.1 (heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita maxima] >XP_023003924.1 heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 525 bits (1353), Expect = 4.63e-188
Identity = 261/263 (99.24%), Postives = 261/263 (99.24%), Query Frame = 0 

Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTH FPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHVFPVV 60

Query: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKR SDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRLSDKDQMEYTEILKLRG 180

Query: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240
           LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG
Sbjct: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTSNEARRAESRSRQ 263
           SRYVELFPSTSNEARRAESRSRQ
Sbjct: 241 SRYVELFPSTSNEARRAESRSRQ 263

[Close]
BLAST of Cp4.1LG19g08500 vs. NCBI nr
Match: XP_008440908.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo] >XP_016899253.1 PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo])

HSP 1 Score: 518 bits (1334), Expect = 3.65e-185
Identity = 257/263 (97.72%), Postives = 259/263 (98.48%), Query Frame = 0 

Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSST GFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNC+DIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240
           LPFSV KS+IIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFAS EEAKRAMSKDKMTIG
Sbjct: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTSNEARRAESRSRQ 263
           SRYVELFPST NEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]
BLAST of Cp4.1LG19g08500 vs. NCBI nr
Match: XP_004134826.1 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis sativus] >XP_011658072.1 heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis sativus] >KGN48994.1 hypothetical protein Csa_003171 [Cucumis sativus])

HSP 1 Score: 518 bits (1333), Expect = 5.18e-185
Identity = 256/263 (97.34%), Postives = 259/263 (98.48%), Query Frame = 0 

Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSST GFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNC+DIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNA+AAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240
           LPFSV KS+IIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFAS EEAKRAMSKDKMTIG
Sbjct: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTSNEARRAESRSRQ 263
           SRYVELFPST NEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]
BLAST of Cp4.1LG19g08500 vs. NCBI nr
Match: XP_038882740.1 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Benincasa hispida])

HSP 1 Score: 516 bits (1330), Expect = 1.49e-184
Identity = 255/263 (96.96%), Postives = 259/263 (98.48%), Query Frame = 0 

Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSST GFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNC+DIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNA+A+EVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240
           LPFSV KS+IIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFAS EEAKRAMSKDKMTIG
Sbjct: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTSNEARRAESRSRQ 263
           SRYVELFPST NEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]
BLAST of Cp4.1LG19g08500 vs. ExPASy TrEMBL
Match: A0A6J1EFC5 (heterogeneous nuclear ribonucleoprotein H2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433681 PE=4 SV=1)

HSP 1 Score: 529 bits (1363), Expect = 6.69e-190
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0 

Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240
           LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG
Sbjct: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTSNEARRAESRSRQ 263
           SRYVELFPSTSNEARRAESRSRQ
Sbjct: 241 SRYVELFPSTSNEARRAESRSRQ 263

[Close]
BLAST of Cp4.1LG19g08500 vs. ExPASy TrEMBL
Match: A0A6J1KUQ4 (heterogeneous nuclear ribonucleoprotein H-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497369 PE=4 SV=1)

HSP 1 Score: 525 bits (1353), Expect = 2.24e-188
Identity = 261/263 (99.24%), Postives = 261/263 (99.24%), Query Frame = 0 

Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTH FPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHVFPVV 60

Query: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKR SDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRLSDKDQMEYTEILKLRG 180

Query: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240
           LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG
Sbjct: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTSNEARRAESRSRQ 263
           SRYVELFPSTSNEARRAESRSRQ
Sbjct: 241 SRYVELFPSTSNEARRAESRSRQ 263

[Close]
BLAST of Cp4.1LG19g08500 vs. ExPASy TrEMBL
Match: A0A1S4DTH1 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485191 PE=4 SV=1)

HSP 1 Score: 518 bits (1334), Expect = 1.77e-185
Identity = 257/263 (97.72%), Postives = 259/263 (98.48%), Query Frame = 0 

Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSST GFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNC+DIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240
           LPFSV KS+IIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFAS EEAKRAMSKDKMTIG
Sbjct: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTSNEARRAESRSRQ 263
           SRYVELFPST NEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]
BLAST of Cp4.1LG19g08500 vs. ExPASy TrEMBL
Match: A0A0A0KJN7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509630 PE=4 SV=1)

HSP 1 Score: 518 bits (1333), Expect = 2.51e-185
Identity = 256/263 (97.34%), Postives = 259/263 (98.48%), Query Frame = 0 

Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSST GFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNC+DIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNA+AAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240
           LPFSV KS+IIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFAS EEAKRAMSKDKMTIG
Sbjct: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTSNEARRAESRSRQ 263
           SRYVELFPST NEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]
BLAST of Cp4.1LG19g08500 vs. ExPASy TrEMBL
Match: A0A6J1BYF3 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005858 PE=4 SV=1)

HSP 1 Score: 506 bits (1304), Expect = 6.62e-181
Identity = 250/263 (95.06%), Postives = 255/263 (96.96%), Query Frame = 0 

Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSST GFQPYGYGSFPPT AFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTPAFPVV 60

Query: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNC+DIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+QVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSMQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNA+AAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240
           LPFSV KS+I EFFGEFDL EDR+HIASRPDGKATGEAYVEFAS EEAKRAMSKDKM IG
Sbjct: 181 LPFSVTKSNITEFFGEFDLTEDRVHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMMIG 240

Query: 241 SRYVELFPSTSNEARRAESRSRQ 263
           SRYVELFPST NEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]
BLAST of Cp4.1LG19g08500 vs. TAIR 10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 354.8 bits (909), Expect = 6.2e-98
Identity = 180/267 (67.42%), Postives = 212/267 (79.40%), Query Frame = 0 

Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV 60
           MYG RGAM GSG    GYEVGSKRQRMM+ NPY AV +    F P+GY        FPVV
Sbjct: 1   MYGSRGAMFGSG----GYEVGSKRQRMMQSNPYLAVGTGPTSFPPFGYAG-----GFPVV 60

Query: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNC+DIDIF+FFAGL+IVDVLLV+KNG+F GEAFVVFAG +QVE ALQRDR NM
Sbjct: 61  RLRGLPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNM 120

Query: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPP----RQKRFSDKDQMEYTEIL 180
           GRRYVEVFRC +QDYYNA+AAE   EG Y+ +   SPPP    R KRFS+K+++EYTE+L
Sbjct: 121 GRRYVEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAKRFSEKEKLEYTEVL 180

Query: 181 KLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDK 240
           K+RGLP+SV K  IIEFF  + + + R+ +  RPDGKATGEA+VEF + EEA+RAM+KDK
Sbjct: 181 KMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDK 240

Query: 241 MTIGSRYVELFPSTSNEARRAESRSRQ 264
           M+IGSRYVELFP+T  EARRAE+RSRQ
Sbjct: 241 MSIGSRYVELFPTTREEARRAEARSRQ 255

[Close]
BLAST of Cp4.1LG19g08500 vs. TAIR 10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 236.5 bits (602), Expect = 2.4e-62
Identity = 132/288 (45.83%), Postives = 181/288 (62.85%), Query Frame = 0 

Query: 10  GSGGVSDGYEVGSKRQRMME---PNPYFAV-SSSTVGFQPYGYGSFPPTHAFPVVRLRGL 69
           G G   DG E+G KRQRM++   P P++    SS   + PYG+ + PP   FP VRLRGL
Sbjct: 5   GYGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAVRLRGL 64

Query: 70  PFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYV 129
           PF+C+++D+ +FF GLD+VDVL V++N +  GEAF V    +QV+FALQ++RQNMGRRYV
Sbjct: 65  PFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYV 124

Query: 130 EVFRCKRQDYYNAIAAEVNYEGIY--------------------------DNDYHGSPPP 189
           EVFR  +Q+YY AIA EV    ++                               GS P 
Sbjct: 125 EVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPR 184

Query: 190 R---QKRFSD--KDQMEYTEILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKA 249
           R   + R SD  K+ +E+T IL+LRGLPFS  K DI++FF +F+L+ED +H+    +G+ 
Sbjct: 185 RHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRP 244

Query: 250 TGEAYVEFASEEEAKRAMSKDKMTIGSRYVELFPSTSNEARRAESRSR 263
           TGEA+VEF + E+++ AM KD+ T+GSRY+ELFPS+  E   A SR R
Sbjct: 245 TGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]
BLAST of Cp4.1LG19g08500 vs. TAIR 10
Match: AT5G66010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 212.2 bits (539), Expect = 4.9e-55
Identity = 106/161 (65.84%), Postives = 130/161 (80.75%), Query Frame = 0 

Query: 107 VQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPP----RQK 166
           +QVE ALQRDR NMGRRYVEVFRC +QDYYNA+AAE   EG Y+ +   SPPP    R K
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAK 60

Query: 167 RFSDKDQMEYTEILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEF 226
           RFS+K+++EYTE+LK+RGLP+SV K  IIEFF  + + + R+ +  RPDGKATGEA+VEF
Sbjct: 61  RFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEF 120

Query: 227 ASEEEAKRAMSKDKMTIGSRYVELFPSTSNEARRAESRSRQ 264
            + EEA+RAM+KDKM+IGSRYVELFP+T  EARRAE+RSRQ
Sbjct: 121 ETGEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSRQ 158

[Close]
BLAST of Cp4.1LG19g08500 vs. TAIR 10
Match: AT5G41690.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 45.8 bits (107), Expect = 6.1e-05
Identity = 49/176 (27.84%), Postives = 84/176 (47.73%), Query Frame = 0 

Query: 65  LPFNCSDIDIFKFFAGL-DIVDV-LLVNKNGRFMGEAFVVFAGSVQVEFALQ-RDRQNMG 124
           LP+     +I  FF  + ++V V L+VN  G+ +G  FV FA   + E ALQ ++ + + 
Sbjct: 75  LPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKNGECLD 134

Query: 125 RRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYH--GSPPPRQKRFSDKDQMEYTEILKLR 184
              + +    ++  Y      ++++ ++D DY    S P  +    ++      E+L + 
Sbjct: 135 NNKIFLDVANKKATYLPPKYCIDHK-VWDKDYRRLESHPIEE---DERPPNSVEEVLFVA 194

Query: 185 GLPFSVKKSDIIEFF---GEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAM 233
            L    K SDI +FF   GE       I +    +GK  G  +VEFAS +E K+A+
Sbjct: 195 NLSPQTKISDIFDFFNCVGEV----VSIRLMVNHEGKHVGYGFVEFASADETKKAL 242

[Close]
BLAST of Cp4.1LG19g08500 vs. TAIR 10
Match: AT3G10845.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 45.1 bits (105), Expect = 1.0e-04
Identity = 38/157 (24.20%), Postives = 67/157 (42.68%), Query Frame = 0 

Query: 87  LLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM---GRRYVEVFRC------KRQDYYN 146
           L+VN  G+ +G+ FV FA + + E AL++ +      G  +++          K +DY  
Sbjct: 214 LIVNHTGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFLKAANIAPFPPPKYEDYLG 273

Query: 147 AIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKKSDIIEFFGEF 206
               E   EG+ +  Y      ++  F             +  LP       ++ FF +F
Sbjct: 274 QERDEAAVEGLAETPYFVEEARKKTLF-------------VTNLPPRTSIQRMLYFFQDF 333

Query: 207 DLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSK 235
           ++   R+ +     GK  G  Y EFAS  EA++A+ +
Sbjct: 334 EVV--RVRLIVDQSGKHMGCGYFEFASANEAEKALEQ 355

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g08500 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q5E9J11.6e-2635.64Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 S... [more]
Q3US412.1e-2636.06Epithelial splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Esrp1 PE=1 ... [more]
P525972.1e-2635.15Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1... [more]
Q60HC32.1e-2635.15Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRN... [more]
Q9Z2X12.1e-2635.15Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=... [more]
BLAST of Cp4.1LG19g08500 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022926595.11.38e-189100.00heterogeneous nuclear ribonucleoprotein H2-like isoform X1 [Cucurbita moschata] ... [more]
XP_023003923.14.63e-18899.24heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita maxima] >XP... [more]
XP_008440908.13.65e-18597.72PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo] ... [more]
XP_004134826.15.18e-18597.34heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis sativus] >XP_0116... [more]
XP_038882740.11.49e-18496.96heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Benincasa hispida][more]
BLAST of Cp4.1LG19g08500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EFC56.69e-190100.00heterogeneous nuclear ribonucleoprotein H2-like isoform X1 OS=Cucurbita moschata... [more]
A0A6J1KUQ42.24e-18899.24heterogeneous nuclear ribonucleoprotein H-like isoform X1 OS=Cucurbita maxima OX... [more]
A0A1S4DTH11.77e-18597.72heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Cucumis melo OX=3656 GN... [more]
A0A0A0KJN72.51e-18597.34RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509630 PE=4 SV... [more]
A0A6J1BYF36.62e-18195.06heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Momordica charantia OX=... [more]
BLAST of Cp4.1LG19g08500 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G66010.16.2e-9867.42RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G20890.12.4e-6245.83RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G66010.24.9e-5565.84RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G41690.16.1e-0527.84RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G10845.11.0e-0424.20RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 175..247
e-value: 4.5E-9
score: 46.1
coord: 59..128
e-value: 4.8E-5
score: 32.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 178..244
e-value: 1.4E-8
score: 34.4
coord: 61..123
e-value: 6.5E-6
score: 25.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 174..251
score: 10.291966
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 159..263
e-value: 7.8E-30
score: 105.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 56..141
e-value: 8.9E-23
score: 82.2
NoneNo IPR availablePANTHERPTHR13976:SF71RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 1..263
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 1..263
NoneNo IPR availableCDDcd12254RRM_hnRNPH_ESRPs_RBM12_likecoord: 175..247
e-value: 3.89603E-29
score: 103.406
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 52..137
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 173..260

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g08500.1Cp4.1LG19g08500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:1990904 ribonucleoprotein complex
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding