Cp4.1LG19g06890 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g06890
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Cp4.1LG19: 7309552 .. 7310130 (+)
RNA-Seq Expression	Cp4.1LG19g06890
Synteny	Cp4.1LG19g06890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGGGACAGACCAGGAGGTTGTGAAGGCTCGTCATCTCGGTCGGCCACCGTCGATCAACAACAACAGCTGCAGCCTCCGCCACAGCCCACTCAGGCCAGTGCTGTTCCTTTGAGCCGTTACGAGTCGCAGAAGCGACGAGATTGGAACACTTTTGGGCAATATCTAAAAAACCAAACACCCCCAGTGCCGTTATCCCACTGTAACTATAACCATGTTCTTGAATTTCTTCGATACCTGGATCAGTTTGGAAAAACACGGGTTCACTCACATGGGTGTGTGTTTTTCGGGCAGCCCGACCCGCCTGCTCCCTGCCCTTGCCCATTGAAACAGGCTTGGGGTAGCCTGGATGCCCTGATCGGCCGACTCCGTGCTGCCTACGAGGAGAGTGGGGGATCCCCAGAGGTGAACCCTTTTGGAAATGGAGCCATTCGGATGTATCTACGAGAGGTGAAGGATTGTCAAGCGAAGGCCAGAGGGATTCCGTACAAGAAGAAGAAGAAGAAGAAGAGGAATCAGATTATTAAGGGCAACGATAATAATGACACCAACGCTGCTTTGACCCAGATGGCTTGA

mRNA sequence

ATGTTAGGGGACAGACCAGGAGGTTGTGAAGGCTCGTCATCTCGGTCGGCCACCGTCGATCAACAACAACAGCTGCAGCCTCCGCCACAGCCCACTCAGGCCAGTGCTGTTCCTTTGAGCCGTTACGAGTCGCAGAAGCGACGAGATTGGAACACTTTTGGGCAATATCTAAAAAACCAAACACCCCCAGTGCCGTTATCCCACTGTAACTATAACCATGTTCTTGAATTTCTTCGATACCTGGATCAGTTTGGAAAAACACGGGTTCACTCACATGGGTGTGTGTTTTTCGGGCAGCCCGACCCGCCTGCTCCCTGCCCTTGCCCATTGAAACAGGCTTGGGGTAGCCTGGATGCCCTGATCGGCCGACTCCGTGCTGCCTACGAGGAGAGTGGGGGATCCCCAGAGGTGAACCCTTTTGGAAATGGAGCCATTCGGATGTATCTACGAGAGGTGAAGGATTGTCAAGCGAAGGCCAGAGGGATTCCGTACAAGAAGAAGAAGAAGAAGAAGAGGAATCAGATTATTAAGGGCAACGATAATAATGACACCAACGCTGCTTTGACCCAGATGGCTTGA

Coding sequence (CDS)

ATGTTAGGGGACAGACCAGGAGGTTGTGAAGGCTCGTCATCTCGGTCGGCCACCGTCGATCAACAACAACAGCTGCAGCCTCCGCCACAGCCCACTCAGGCCAGTGCTGTTCCTTTGAGCCGTTACGAGTCGCAGAAGCGACGAGATTGGAACACTTTTGGGCAATATCTAAAAAACCAAACACCCCCAGTGCCGTTATCCCACTGTAACTATAACCATGTTCTTGAATTTCTTCGATACCTGGATCAGTTTGGAAAAACACGGGTTCACTCACATGGGTGTGTGTTTTTCGGGCAGCCCGACCCGCCTGCTCCCTGCCCTTGCCCATTGAAACAGGCTTGGGGTAGCCTGGATGCCCTGATCGGCCGACTCCGTGCTGCCTACGAGGAGAGTGGGGGATCCCCAGAGGTGAACCCTTTTGGAAATGGAGCCATTCGGATGTATCTACGAGAGGTGAAGGATTGTCAAGCGAAGGCCAGAGGGATTCCGTACAAGAAGAAGAAGAAGAAGAAGAGGAATCAGATTATTAAGGGCAACGATAATAATGACACCAACGCTGCTTTGACCCAGATGGCTTGA

Protein sequence

MLGDRPGGCEGSSSRSATVDQQQQLQPPPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGNDNNDTNAALTQMA

Homology

[Close]

BLAST of Cp4.1LG19g06890 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.9e-64
Identity = 116/173 (67.05%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 15  RSATVDQQQQLQPPPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHV 74
           R  ++ +    +PP  P        SRYESQKRRDWNTFGQYLKNQ PPVP+SHC+ NHV
Sbjct: 7   RGKSLMESSGSEPPVTP--------SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHV 66

Query: 75  LEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGS 134
           L+FLRYLDQFGKT+VH  GC+F+GQP+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG 
Sbjct: 67  LDFLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGP 126

Query: 135 PEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGNDNNDTNAA 188
           PE NPF +GAIR+YLREV++CQAKARGIPYKKKKKKK    + G   + ++++
Sbjct: 127 PETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSS 171

[Close]

BLAST of Cp4.1LG19g06890 vs. ExPASy Swiss-Prot
Match: Q9ZVA0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.5e-61
Identity = 117/181 (64.64%), Postives = 136/181 (75.14%), Query Frame = 0


Query: 7   GGCEGSSSRSATVDQQQQLQPPPQPTQASAVP----LSRYESQKRRDWNTFGQYLKNQTP 66
           G  EGSS        Q Q QP PQP Q  + P    LSRYESQKRRDWNTF QYL+NQ P
Sbjct: 10  GIAEGSS--------QPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQP 69

Query: 67  PVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIG 126
           PV +S C  NH+L+FL+YLDQFGKT+VH HGCVFFGQ +P   C CPLKQAWGSLDALIG
Sbjct: 70  PVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIG 129

Query: 127 RLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGNDNN 184
           RLRAA+EE+GG PE NPF  G IR++LREV+D QAKARG+PYKK+KK+K+   +K +D  
Sbjct: 130 RLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDGE 182

[Close]

BLAST of Cp4.1LG19g06890 vs. ExPASy Swiss-Prot
Match: Q9SN52 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LSH9 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.6e-60
Identity = 110/151 (72.85%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 28  PPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKT 87
           PPQP Q    PLSRYESQKRRDWNTF QYLK+Q PP+ +S  +Y HVL FLRYLDQFGKT
Sbjct: 28  PPQPQQ----PLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKT 87

Query: 88  RVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEE-SGGSPEVNPFGNGAIR 147
           +VH   CVFFGQPDPP PC CPLKQAWGSLDALIGRLRAAYEE  GGSP+ NPF NG+IR
Sbjct: 88  KVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIR 147

Query: 148 MYLREVKDCQAKARGIPYKKKKKKK-RNQII 177
           ++LREV++ QAKARGIPY+KKK++K +N+++
Sbjct: 148 VHLREVRESQAKARGIPYRKKKRRKTKNEVV 174

[Close]

BLAST of Cp4.1LG19g06890 vs. ExPASy Swiss-Prot
Match: A2Y5N0 (Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.6e-58
Identity = 107/157 (68.15%), Postives = 125/157 (79.62%), Query Frame = 0


Query: 20  DQQQQLQPPPQ--PTQASAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEF 79
           D Q Q QP  Q  P       LSRYESQKRRDWNTF QYL+N  PP+ L+ C+  HV+EF
Sbjct: 9   DAQAQAQPVAQAPPAMQPMQQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEF 68

Query: 80  LRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEV 139
           L+YLDQFGKT+VH+ GC ++GQP PPAPCPCPL+QAWGSLDALIGRLRAAYEESG +PE 
Sbjct: 69  LKYLDQFGKTKVHASGCAYYGQPSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAPES 128

Query: 140 NPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQ 175
           NPF   A+R+YLREV+D QAKARGIPY+KKK+K+  Q
Sbjct: 129 NPFAARAVRIYLREVRDAQAKARGIPYEKKKRKRTQQ 165

[Close]

BLAST of Cp4.1LG19g06890 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.6e-58
Identity = 102/133 (76.69%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 39  LSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFG 98
           LSRYE+QKRRDWNTFGQYL+N  PP+ LS C+  HVLEFLRYLDQFGKT+VH+H C FFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 99  QPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAK 158
            P+PPAPC CPL+QAWGSLDALIGRLRAA+EE+GGSPE NPFG  A+R+YLREV+D QAK
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 159 ARGIPYKKKKKKK 172
           ARGI Y+KKK+K+
Sbjct: 166 ARGISYEKKKRKR 178

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BLAST of Cp4.1LG19g06890 vs. NCBI nr
Match: XP_023518847.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo] >XP_023518848.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 402 bits (1033), Expect = 1.21e-141
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDQQQQLQPPPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGDRPGGCEGSSSRSATVDQQQQLQPPPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDQQQQLQPPPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180

Query: 181 NNDTNAALTQMA 192
           NNDTNAALTQMA
Sbjct: 181 NNDTNAALTQMA 192

[Close]

BLAST of Cp4.1LG19g06890 vs. NCBI nr
Match: XP_022926651.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022926652.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >KAG7026524.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 398 bits (1022), Expect = 5.75e-140
Identity = 190/192 (98.96%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDQQQQLQPPPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGDRPGGCEGSSSRSATVD QQQLQPPPQPTQ SAVPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180

Query: 181 NNDTNAALTQMA 192
           NNDTNAALTQMA
Sbjct: 181 NNDTNAALTQMA 192

[Close]

BLAST of Cp4.1LG19g06890 vs. NCBI nr
Match: XP_023003302.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_023003303.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_023003304.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 384 bits (985), Expect = 2.44e-134
Identity = 185/192 (96.35%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDQQQQLQPPPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGD P  CE SSSRSAT DQQQQLQPPPQPTQ S VPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDTPS-CEASSSRSATADQQQQLQPPPQPTQPSVVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180

Query: 181 NNDTNAALTQMA 192
           NNDTNAALTQMA
Sbjct: 181 NNDTNAALTQMA 191

[Close]

BLAST of Cp4.1LG19g06890 vs. NCBI nr
Match: KAG6594547.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 345 bits (886), Expect = 3.62e-119
Identity = 161/164 (98.17%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDQQQQLQPPPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGDRPGGCEGSSSRSATVD QQQLQPPPQPTQ SAVPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPY 164
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIP+
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPW 164

[Close]

BLAST of Cp4.1LG19g06890 vs. NCBI nr
Match: XP_038881253.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida])

HSP 1 Score: 302 bits (773), Expect = 7.62e-102
Identity = 158/200 (79.00%), Postives = 167/200 (83.50%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSA-TVDQQQQLQPPPQP-TQASA-VPLSRYESQKRRDWNTFGQYL 60
           MLG+RP  CEGSSS  A T DQQQ  QP  Q  TQ  A VPLSRYESQKRRDWNTFGQYL
Sbjct: 1   MLGERPI-CEGSSSGLAITADQQQAAQPQTQTQTQVGAGVPLSRYESQKRRDWNTFGQYL 60

Query: 61  KNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSL 120
           KNQTPPV LS+CN NHVLEFLRYLDQFGKTRVHSHGCVFFGQP+PPAPCPCPLKQAWGSL
Sbjct: 61  KNQTPPVSLSNCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPEPPAPCPCPLKQAWGSL 120

Query: 121 DALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQII- 180
           DALIGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIPYKKKKKK+ NQ++ 
Sbjct: 121 DALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMMM 180

Query: 181 -------KGNDNNDTNAALT 189
                    ++NNDTNA LT
Sbjct: 181 NKQQLPNNNSNNNDTNAPLT 199

[Close]

BLAST of Cp4.1LG19g06890 vs. ExPASy TrEMBL
Match: A0A6J1EEZ4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111433720 PE=3 SV=1)

HSP 1 Score: 398 bits (1022), Expect = 2.79e-140
Identity = 190/192 (98.96%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDQQQQLQPPPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGDRPGGCEGSSSRSATVD QQQLQPPPQPTQ SAVPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180

Query: 181 NNDTNAALTQMA 192
           NNDTNAALTQMA
Sbjct: 181 NNDTNAALTQMA 192

[Close]

BLAST of Cp4.1LG19g06890 vs. ExPASy TrEMBL
Match: A0A6J1KW42 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111496952 PE=3 SV=1)

HSP 1 Score: 384 bits (985), Expect = 1.18e-134
Identity = 185/192 (96.35%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDQQQQLQPPPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGD P  CE SSSRSAT DQQQQLQPPPQPTQ S VPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDTPS-CEASSSRSATADQQQQLQPPPQPTQPSVVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180

Query: 181 NNDTNAALTQMA 192
           NNDTNAALTQMA
Sbjct: 181 NNDTNAALTQMA 191

[Close]

BLAST of Cp4.1LG19g06890 vs. ExPASy TrEMBL
Match: A0A0A0KNK5 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G519580 PE=3 SV=1)

HSP 1 Score: 301 bits (772), Expect = 6.23e-102
Identity = 161/211 (76.30%), Postives = 167/211 (79.15%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSA-TVDQQQQLQPPPQPTQASA-----VPLSRYESQKRRDWNTFG 60
           MLG+R   CEGSSS  A T DQQQQ Q   Q  QA A     VPLSRYESQKRRDWNTFG
Sbjct: 1   MLGERAI-CEGSSSGLAITADQQQQQQ---QAGQAQAGTGAGVPLSRYESQKRRDWNTFG 60

Query: 61  QYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAW 120
           QYLKNQTPPV LSHCN NHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAW
Sbjct: 61  QYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAW 120

Query: 121 GSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQ 180
           GSLDALIGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIPYKKKKKK+ NQ
Sbjct: 121 GSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQ 180

Query: 181 IIK--------------GNDNNDTNAALTQM 191
           ++                NDNNDTNA LT +
Sbjct: 181 MMMMNNTNKQQQLLQQLPNDNNDTNAPLTHI 207

[Close]

BLAST of Cp4.1LG19g06890 vs. ExPASy TrEMBL
Match: A0A5A7UGI5 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008220 PE=3 SV=1)

HSP 1 Score: 300 bits (768), Expect = 2.36e-101
Identity = 158/206 (76.70%), Postives = 164/206 (79.61%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSA-TVDQQQQLQPPPQPTQASAV-PLSRYESQKRRDWNTFGQYLK 60
           MLG+R   CEGSSS  A T DQQQQ Q      Q  AV PLSRYESQKRRDWNTFGQYLK
Sbjct: 1   MLGERAI-CEGSSSGLAITADQQQQQQQAAGQAQPGAVVPLSRYESQKRRDWNTFGQYLK 60

Query: 61  NQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120
           NQTPPV LSHCN NHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD
Sbjct: 61  NQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120

Query: 121 ALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIK- 180
           ALIGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIPYKKKKKK+ NQ +  
Sbjct: 121 ALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQTMMM 180

Query: 181 ------------GNDNNDTNAALTQM 191
                        N+NNDTNA LT +
Sbjct: 181 NNMNKQQQLQQLPNNNNDTNAPLTHI 205

[Close]

BLAST of Cp4.1LG19g06890 vs. ExPASy TrEMBL
Match: A0A1S3CP28 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103503153 PE=3 SV=1)

HSP 1 Score: 297 bits (761), Expect = 3.16e-100
Identity = 157/210 (74.76%), Postives = 164/210 (78.10%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSA-TVDQQQQLQPPPQPTQA------SAVPLSRYESQKRRDWNTF 60
           MLG+R   CEGSSS  A T DQQ Q Q   Q   A      + VPLSRYESQKRRDWNTF
Sbjct: 1   MLGERAI-CEGSSSGLAITADQQHQQQQQQQQQAAGQAQPGAVVPLSRYESQKRRDWNTF 60

Query: 61  GQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQA 120
           GQYLKNQTPPV LSHCN NHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQA
Sbjct: 61  GQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQA 120

Query: 121 WGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRN 180
           WGSLDALIGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIPYKKKKKK+ N
Sbjct: 121 WGSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNN 180

Query: 181 QIIK------------GNDNNDTNAALTQM 191
           Q +              N+NNDTNA LT +
Sbjct: 181 QTMMMNNMNKQQLQQLPNNNNDTNAPLTHI 209

[Close]

BLAST of Cp4.1LG19g06890 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 246.9 bits (629), Expect = 1.3e-65
Identity = 116/173 (67.05%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 15  RSATVDQQQQLQPPPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHV 74
           R  ++ +    +PP  P        SRYESQKRRDWNTFGQYLKNQ PPVP+SHC+ NHV
Sbjct: 7   RGKSLMESSGSEPPVTP--------SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHV 66

Query: 75  LEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGS 134
           L+FLRYLDQFGKT+VH  GC+F+GQP+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG 
Sbjct: 67  LDFLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGP 126

Query: 135 PEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGNDNNDTNAA 188
           PE NPF +GAIR+YLREV++CQAKARGIPYKKKKKKK    + G   + ++++
Sbjct: 127 PETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSS 171

[Close]

BLAST of Cp4.1LG19g06890 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 246.9 bits (629), Expect = 1.3e-65
Identity = 116/173 (67.05%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 15  RSATVDQQQQLQPPPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHV 74
           R  ++ +    +PP  P        SRYESQKRRDWNTFGQYLKNQ PPVP+SHC+ NHV
Sbjct: 7   RGKSLMESSGSEPPVTP--------SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHV 66

Query: 75  LEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGS 134
           L+FLRYLDQFGKT+VH  GC+F+GQP+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG 
Sbjct: 67  LDFLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGP 126

Query: 135 PEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGNDNNDTNAA 188
           PE NPF +GAIR+YLREV++CQAKARGIPYKKKKKKK    + G   + ++++
Sbjct: 127 PETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSS 171

[Close]

BLAST of Cp4.1LG19g06890 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 236.5 bits (602), Expect = 1.8e-62
Identity = 117/181 (64.64%), Postives = 136/181 (75.14%), Query Frame = 0


Query: 7   GGCEGSSSRSATVDQQQQLQPPPQPTQASAVP----LSRYESQKRRDWNTFGQYLKNQTP 66
           G  EGSS        Q Q QP PQP Q  + P    LSRYESQKRRDWNTF QYL+NQ P
Sbjct: 10  GIAEGSS--------QPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQP 69

Query: 67  PVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIG 126
           PV +S C  NH+L+FL+YLDQFGKT+VH HGCVFFGQ +P   C CPLKQAWGSLDALIG
Sbjct: 70  PVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIG 129

Query: 127 RLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGNDNN 184
           RLRAA+EE+GG PE NPF  G IR++LREV+D QAKARG+PYKK+KK+K+   +K +D  
Sbjct: 130 RLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDGE 182

[Close]

BLAST of Cp4.1LG19g06890 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 232.6 bits (592), Expect = 2.6e-61
Identity = 110/151 (72.85%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 28  PPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKT 87
           PPQP Q    PLSRYESQKRRDWNTF QYLK+Q PP+ +S  +Y HVL FLRYLDQFGKT
Sbjct: 28  PPQPQQ----PLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKT 87

Query: 88  RVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEE-SGGSPEVNPFGNGAIR 147
           +VH   CVFFGQPDPP PC CPLKQAWGSLDALIGRLRAAYEE  GGSP+ NPF NG+IR
Sbjct: 88  KVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIR 147

Query: 148 MYLREVKDCQAKARGIPYKKKKKKK-RNQII 177
           ++LREV++ QAKARGIPY+KKK++K +N+++
Sbjct: 148 VHLREVRESQAKARGIPYRKKKRRKTKNEVV 174

[Close]

BLAST of Cp4.1LG19g06890 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-59
Identity = 102/133 (76.69%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 39  LSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFG 98
           LSRYE+QKRRDWNTFGQYL+N  PP+ LS C+  HVLEFLRYLDQFGKT+VH+H C FFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 99  QPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAK 158
            P+PPAPC CPL+QAWGSLDALIGRLRAA+EE+GGSPE NPFG  A+R+YLREV+D QAK
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 159 ARGIPYKKKKKKK 172
           ARGI Y+KKK+K+
Sbjct: 166 ARGISYEKKKRKR 178

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g06890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	1.9e-64	67.05	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9ZVA0	2.5e-61	64.64	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9SN52	3.6e-60	72.85	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2Y5N0	2.6e-58	68.15	Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1	[more]
Q9LW68	2.6e-58	76.69	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of Cp4.1LG19g06890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518847.1	1.21e-141	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo] >X...	[more]
XP_022926651.1	5.75e-140	98.96	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022926...	[more]
XP_023003302.1	2.44e-134	96.35	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_02300330...	[more]
KAG6594547.1	3.62e-119	98.17	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_038881253.1	7.62e-102	79.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG19g06890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEZ4	2.79e-140	98.96	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1KW42	1.18e-134	96.35	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A0A0KNK5	6.23e-102	76.30	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G519580 PE=3 S...	[more]
A0A5A7UGI5	2.36e-101	76.70	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CP28	3.16e-100	74.76	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Cp4.1LG19g06890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	1.3e-65	67.05	Protein of unknown function (DUF640)	[more]
AT2G42610.2	1.3e-65	67.05	Protein of unknown function (DUF640)	[more]
AT1G78815.1	1.8e-62	64.64	Protein of unknown function (DUF640)	[more]
AT4G18610.1	2.6e-61	72.85	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.8e-59	76.69	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 36..154 e-value: 3.0E-62 score: 208.4
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 41..168 score: 76.527878
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 9..183
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 9..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g06890.1	Cp4.1LG19g06890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus