Cp4.1LG19g04920 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG19g04920
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionSmall nuclear ribonucleoprotein G
LocationCp4.1LG19: 4151921 .. 4154377 (-)
RNA-Seq ExpressionCp4.1LG19g04920
SyntenyCp4.1LG19g04920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTCACTTGGTGAACAAAATTCGAGGACTCGCAAAGACCTGCTGCTCGATTGATTAGGGTTTTTCCTTCTTCTGATCACTGTTCTACCAAAACCTCTTCCCATCTCTCGTTCTTCACCATGAGTAGGTCAGGCCAGCCTCCAGATCTTAAAAAGTAAGTGCTGCCCCTAAATTTTATCCTGTTCGGTGTATTTTTGGTTCGATTATTTCAACTTTTTTTATCCTTTGTCCTCATTTTTCCCTTCTTTGTGCAGATACATGGACAAGAAGCTTCAGAGTAAGTTCTGTTCCTCACGAGCTTGTTTATCTTATTCGTTGTCGCACCGTTTAGGTTCTGGAAAATTTGGTTTGGAAATGACAATTTGTTATTCTGAAAGTCGAGAATCCGTCAATTCTGTTCGTTTTCTTTGAAGTTATGCCATCTGATTTATAATTTCGTTTGTTGATTAGTGTTTGTAATGTGAGGAACCTGAAGTTGACTCTTCCTAGTTTAGTACCTATGTTAAGATACGAAACTGTTTGGAGACGAACGGAAGAAGGATTGGGCTTTAGAGTTAGATTATATGGTGTTGAGAATTGTTGGGAGGGAGTCCGACGTTGACTAATTAAGGGATGATCATGGGTTTAAGTAAGGAATATACCTCCATTGGTATGAGCCATTTCAGGGAAACCAAAACCAAAGCCATGAGAGCTTATTCTCAAAGTGGATAATATCATACCATTGTGGAGGTTCGTAGTTCCTAACATGGTACCAGAGCCATGCCTTTAACTTAGCCATGTCAATAAAATCCTCAAGTGTCGAACAAAGAAGTTGCTAACCTTGAATATGTAGTCAAAAGTGACTCAAGTGTCGAACAAAGGGTGTACTTTGTTCGAGGGCTCCTGAGAAAGGAGTCAAGCCTCAATTAAGGGGAGACTGTTTGAGGGCTACATAGGCCTTAGGGGAGGTTTTATGGTGTACTTTATTTGTAGGGAGGATTGTTGAGGATTGTTGGGAGGGGAGGGAGTCCGACATTGGCTAATTAAGGGGATGATCATGGGTTTATAAAGTAAGAAATACATCTCCATTGATATGAGATCTTTTCCGGAAACTAAAAGCAAAGCCATGAGAGTTCATGCGCAAAGTAGTCAATGTCATACCATTGTGGGGGTCTGTGGTTCCTAACGTATAGTACCAAAGGTTGACCATTTTTCTTTTTGTGATGATAGAGACCTAAATCTCACCGTATATCTATCTGCTACATTTGGTTGATTATATCCTAGGTAGGTGGAGACAATCCCATGATTGCTGAGAGACCTAACTTCTAGATAATCTTCCAAAATAAATGGTCATTGAGGCAGCTTTCTTCATTAGGTTGAACATTAGTTTTTCAGTCATTGCATGTATAATCCTGAAATTAAAGAAATCTCACACTTCAGAAAGTTTTGTTTACAAATTGATGTTGCTTCTGAATTACAATTTGCAGTAAAAATGAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTCGTTGACAACACCGTGGAAGTGAACGGTAACGAGAAAACCGATATCGGCATGGTGGTGCGTGTGATTTTGCAATCAAATTCTTCTCTATGTTTGTTTGCTTAAATTGATAACCACTGATAGAGTTCAAGAATTGATTTCCCTTATTGGTTTCCATTTCAGGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGATGGTGCACGCGTTGGAATTTGCTGCTCTGTTTCATAGATTGAGTGAGTAAAACATTCGGAACTGTTGCATTTATAATTTTGGGATGTTACGAATATCAGATGGATTTCTTGTGCTGCCATCATTCTGAACACCTGGCTTATTAATTTCAGCGATGGGGTTTCTGTATTTTGGATTCAATTACCTTGCAAATCTTAGTGTATGAAACCCATCGTATCACTTGAAGATGTGTTCATTAATCCCATTACAGAGGACCCGAAAAGAAGAAATAGTTTCAACCCAGTTTGTATCAAGTCCCAACTTCAATTTACATAGCTTTTCATTCCGAGTTTTTTCGAGTTTTTCACTGAATGAGAGTCGGGATTACGATGTAATCCTTAGAACTTTTTGTAGTAGTCGTACTTCCATCTTGCAGGAACGTCCGGGAAGGAGTTTAGCATTACTCTATCTGCACGACAAAACCGTCGTGCAGGAATTGTCCGAGCTCTTCTAGTCCGAAGAAGAAGATGGTCCAAAGGTCAAACATTCCCATTGACTTTTCCATGAAATCAGGCTGTTGTTTCTTCATGGGCAAGTGCAACTGCCTGGGAAGTCTTTTAGCATTTAGCCATTGAAAAGTCTTAAACCCAAAACATTATTCTACTTTTCTTTGATTCCCAAAGGTTAGGTCTAAGATAAGTTAGTATGAATTATTCATATTATA

mRNA sequence

GTGTCACTTGGTGAACAAAATTCGAGGACTCGCAAAGACCTGCTGCTCGATTGATTAGGGTTTTTCCTTCTTCTGATCACTGTTCTACCAAAACCTCTTCCCATCTCTCGTTCTTCACCATGAGTAGGTCAGGCCAGCCTCCAGATCTTAAAAAATACATGGACAAGAAGCTTCAGATAAAAATGAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTCGTTGACAACACCGTGGAAGTGAACGGTAACGAGAAAACCGATATCGGCATGGTGGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGATGGTGCACGCGTTGGAATTTGCTGCTCTGTTTCATAGATTGACGATGGGGTTTCTGTATTTTGGATTCAATTACCTTGCAAATCTTAGTGTATGAAACCCATCGTATCACTTGAAGATGTGTTCATTAATCCCATTACAGAGGACCCGAAAAGAAGAAATAGTTTCAACCCAGTTTGTATCAAGTCCCAACTTCAATTTACATAGCTTTTCATTCCGAGTTTTTTCGAGTTTTTCACTGAATGAGAGTCGGGATTACGATGTAATCCTTAGAACTTTTTGTAGTAGTCGTACTTCCATCTTGCAGGAACGTCCGGGAAGGAGTTTAGCATTACTCTATCTGCACGACAAAACCGTCGTGCAGGAATTGTCCGAGCTCTTCTAGTCCGAAGAAGAAGATGGTCCAAAGGTCAAACATTCCCATTGACTTTTCCATGAAATCAGGCTGTTGTTTCTTCATGGGCAAGTGCAACTGCCTGGGAAGTCTTTTAGCATTTAGCCATTGAAAAGTCTTAAACCCAAAACATTATTCTACTTTTCTTTGATTCCCAAAGGTTAGGTCTAAGATAAGTTAGTATGAATTATTCATATTATA

Coding sequence (CDS)

ATGAGTAGGTCAGGCCAGCCTCCAGATCTTAAAAAATACATGGACAAGAAGCTTCAGATAAAAATGAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTCGTTGACAACACCGTGGAAGTGAACGGTAACGAGAAAACCGATATCGGCATGGTGGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGA

Protein sequence

MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Homology
[Close]
BLAST of Cp4.1LG19g04920 vs. ExPASy Swiss-Prot
Match: O82221 (Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana OX=3702 GN=At2g23930 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-34
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNS+VTVEALEPV R
Sbjct: 61 VIRGNSIVTVEALEPVGR 78

[Close]
BLAST of Cp4.1LG19g04920 vs. ExPASy Swiss-Prot
Match: P24715 (Probable small nuclear ribonucleoprotein G OS=Medicago sativa OX=3879 GN=C29 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.3e-31
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MS SGQPP LKKYMDK+LQI + ANR++VGTLRGFDQFMNLVVDNTVEVNGNEK DIGMV
Sbjct: 1  MSTSGQPPALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60

Query: 61 VIRGNSVVTVEALEPV 77
          VIRGNSVVTVEALEPV
Sbjct: 61 VIRGNSVVTVEALEPV 76

[Close]
BLAST of Cp4.1LG19g04920 vs. ExPASy Swiss-Prot
Match: Q9VXE0 (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-17
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 0 

Query: 7  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGN 66
          PP++KKYMDK++ +K+N  R V G LRGFD FMN+V+D+TV E   N K +IGMVVIRGN
Sbjct: 6  PPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGN 65

Query: 67 SVVTVEALEPV 77
          S+V VEAL+ V
Sbjct: 66 SIVMVEALDRV 76

[Close]
BLAST of Cp4.1LG19g04920 vs. ExPASy Swiss-Prot
Match: Q3ZBL0 (Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-16
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 0 

Query: 7  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGN 66
          PP+LKK+MDKKL +K+N  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGN
Sbjct: 6  PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65

Query: 67 SVVTVEALEPV 77
          S++ +EALE V
Sbjct: 66 SIIMLEALERV 76

[Close]
BLAST of Cp4.1LG19g04920 vs. ExPASy Swiss-Prot
Match: P62308 (Small nuclear ribonucleoprotein G OS=Homo sapiens OX=9606 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-16
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 0 

Query: 7  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGN 66
          PP+LKK+MDKKL +K+N  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGN
Sbjct: 6  PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65

Query: 67 SVVTVEALEPV 77
          S++ +EALE V
Sbjct: 66 SIIMLEALERV 76

[Close]
BLAST of Cp4.1LG19g04920 vs. NCBI nr
Match: XP_023517274.1 (probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156 bits (395), Expect = 5.94e-48
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of Cp4.1LG19g04920 vs. NCBI nr
Match: XP_004143329.1 (probable small nuclear ribonucleoprotein G [Cucumis sativus] >XP_008462580.1 PREDICTED: probable small nuclear ribonucleoprotein G [Cucumis melo] >XP_038881248.1 probable small nuclear ribonucleoprotein G [Benincasa hispida] >KAA0025250.1 putative small nuclear ribonucleoprotein G [Cucumis melo var. makuwa] >KGN48269.1 hypothetical protein Csa_004211 [Cucumis sativus] >TYK07417.1 putative small nuclear ribonucleoprotein G [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (391), Expect = 2.42e-47
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of Cp4.1LG19g04920 vs. NCBI nr
Match: XP_022962865.1 (probable small nuclear ribonucleoprotein G [Cucurbita moschata] >XP_022972620.1 probable small nuclear ribonucleoprotein G [Cucurbita maxima] >KAG7027195.1 putative small nuclear ribonucleoprotein G, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155 bits (391), Expect = 2.42e-47
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of Cp4.1LG19g04920 vs. NCBI nr
Match: KAG6595179.1 (putative small nuclear ribonucleoprotein G, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155 bits (391), Expect = 8.21e-47
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1   MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
           MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 41  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 100

Query: 61  VIRGNSVVTVEALEPVNRMQ 80
           VIRGNSVVTVEALEPVNRMQ
Sbjct: 101 VIRGNSVVTVEALEPVNRMQ 120

[Close]
BLAST of Cp4.1LG19g04920 vs. NCBI nr
Match: XP_012468163.1 (PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii] >XP_016711763.1 probable small nuclear ribonucleoprotein G [Gossypium hirsutum] >XP_016714896.1 probable small nuclear ribonucleoprotein G [Gossypium hirsutum] >XP_017622516.1 PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium arboreum] >KAB2046411.1 hypothetical protein ES319_D01G232600v1 [Gossypium barbadense] >KAG8504063.1 hypothetical protein CXB51_002398 [Gossypium anomalum] >TYG84423.1 hypothetical protein ES288_D01G249100v1 [Gossypium darwinii] >TYH89319.1 hypothetical protein ES332_D01G251700v1 [Gossypium tomentosum] >TYI98777.1 hypothetical protein E1A91_D01G240600v1 [Gossypium mustelinum])

HSP 1 Score: 153 bits (386), Expect = 1.40e-46
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPV RMQ
Sbjct: 61 VIRGNSVVTVEALEPVGRMQ 80

[Close]
BLAST of Cp4.1LG19g04920 vs. ExPASy TrEMBL
Match: A0A5D3C6A2 (Small nuclear ribonucleoprotein G OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001440 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.17e-47
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of Cp4.1LG19g04920 vs. ExPASy TrEMBL
Match: A0A6J1I955 (Small nuclear ribonucleoprotein G OS=Cucurbita maxima OX=3661 GN=LOC111471160 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.17e-47
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of Cp4.1LG19g04920 vs. ExPASy TrEMBL
Match: A0A0A0KHH9 (Small nuclear ribonucleoprotein G OS=Cucumis sativus OX=3659 GN=Csa_6G452700 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.17e-47
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of Cp4.1LG19g04920 vs. ExPASy TrEMBL
Match: A0A6J1HGA2 (Small nuclear ribonucleoprotein G OS=Cucurbita moschata OX=3662 GN=LOC111463232 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.17e-47
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of Cp4.1LG19g04920 vs. ExPASy TrEMBL
Match: A0A1S3CHS7 (Small nuclear ribonucleoprotein G OS=Cucumis melo OX=3656 GN=LOC103500906 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.17e-47
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of Cp4.1LG19g04920 vs. TAIR 10
Match: AT2G23930.1 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 146.7 bits (369), Expect = 7.7e-36
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNS+VTVEALEPV R
Sbjct: 61 VIRGNSIVTVEALEPVGR 78

[Close]
BLAST of Cp4.1LG19g04920 vs. TAIR 10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 146.4 bits (368), Expect = 1.0e-35
Identity = 72/78 (92.31%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+VVGTLRGFDQFMNLVVDNTVEVNG++KTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNS+VTVEALEPV R
Sbjct: 61 VIRGNSIVTVEALEPVGR 78

[Close]
BLAST of Cp4.1LG19g04920 vs. TAIR 10
Match: AT2G23930.2 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-27
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 14 MDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 73
          MDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEAL
Sbjct: 1  MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEAL 60

Query: 74 EPVNR 79
          EPV R
Sbjct: 61 EPVGR 65

[Close]
BLAST of Cp4.1LG19g04920 vs. TAIR 10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.5e-07
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 0 

Query: 9  DLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGM 68
          DL K++DK +Q+K+   R V GTL+G+DQ +NLV+D  VE            ++   +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69

Query: 69 VVIRGNSVVTV 71
          +V RG +V+ V
Sbjct: 70 IVCRGTAVMLV 80

[Close]
BLAST of Cp4.1LG19g04920 vs. TAIR 10
Match: AT2G03870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.5e-07
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 0 

Query: 9  DLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGM 68
          DL K++DK +Q+K+   R V GTL+G+DQ +NLV+D  VE            ++   +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69

Query: 69 VVIRGNSVVTV 71
          +V RG +V+ V
Sbjct: 70 IVCRGTAVMLV 80

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g04920 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O822211.1e-3492.31Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana OX=3702 GN=At... [more]
P247157.3e-3188.16Probable small nuclear ribonucleoprotein G OS=Medicago sativa OX=3879 GN=C29 PE=... [more]
Q9VXE03.5e-1761.97Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN... [more]
Q3ZBL02.3e-1660.56Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1[more]
P623082.3e-1660.56Small nuclear ribonucleoprotein G OS=Homo sapiens OX=9606 GN=SNRPG PE=1 SV=1[more]
BLAST of Cp4.1LG19g04920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023517274.15.94e-48100.00probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo][more]
XP_004143329.12.42e-4797.50probable small nuclear ribonucleoprotein G [Cucumis sativus] >XP_008462580.1 PRE... [more]
XP_022962865.12.42e-4798.75probable small nuclear ribonucleoprotein G [Cucurbita moschata] >XP_022972620.1 ... [more]
KAG6595179.18.21e-4798.75putative small nuclear ribonucleoprotein G, partial [Cucurbita argyrosperma subs... [more]
XP_012468163.11.40e-4697.50PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii] >XP_... [more]
BLAST of Cp4.1LG19g04920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C6A21.17e-4797.50Small nuclear ribonucleoprotein G OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A6J1I9551.17e-4798.75Small nuclear ribonucleoprotein G OS=Cucurbita maxima OX=3661 GN=LOC111471160 PE... [more]
A0A0A0KHH91.17e-4797.50Small nuclear ribonucleoprotein G OS=Cucumis sativus OX=3659 GN=Csa_6G452700 PE=... [more]
A0A6J1HGA21.17e-4798.75Small nuclear ribonucleoprotein G OS=Cucurbita moschata OX=3662 GN=LOC111463232 ... [more]
A0A1S3CHS71.17e-4797.50Small nuclear ribonucleoprotein G OS=Cucumis melo OX=3656 GN=LOC103500906 PE=3 S... [more]
BLAST of Cp4.1LG19g04920 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G23930.17.7e-3692.31probable small nuclear ribonucleoprotein G [more]
AT3G11500.11.0e-3592.31Small nuclear ribonucleoprotein family protein [more]
AT2G23930.21.0e-2790.77probable small nuclear ribonucleoprotein G [more]
AT2G03870.21.5e-0738.03Small nuclear ribonucleoprotein family protein [more]
AT2G03870.11.5e-0738.03Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 8..72
e-value: 4.8E-23
score: 92.6
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 9..71
e-value: 1.6E-21
score: 75.7
NoneNo IPR availableGENE3D2.30.30.100coord: 1..79
e-value: 1.7E-24
score: 87.7
NoneNo IPR availablePIRSFPIRSF037188Lsm7coord: 5..80
e-value: 2.0E-18
score: 64.3
NoneNo IPR availablePANTHERPTHR10553:SF29SMALL NUCLEAR RIBONUCLEOPROTEIN Gcoord: 1..78
IPR044641Sm-like protein Lsm7/SmGPANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 1..78
IPR034098Small nuclear ribonucleoprotein GCDDcd01719Sm_Gcoord: 6..74
e-value: 1.33095E-38
score: 120.699
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 8..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g04920.1Cp4.1LG19g04920.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0043186 P granule
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0034719 SMN-Sm protein complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding