Cp4.1LG19g04840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG19g04840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRegulatory particle non-ATPase 10
LocationCp4.1LG19: 4273440 .. 4273847 (+)
RNA-Seq ExpressionCp4.1LG19g04840
SyntenyCp4.1LG19g04840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCGGCCGGAGATGAACGTGCCGACTTTGAATCGGACGTAGCCGTCGAGTTTGATCGACAAGACGACGGTGCCGAAGGACTGGTCCTGGTAGAGAGCGGCGCCGTTGTACGGAGAGATCGGAACGTCGTCGCCGACGAGGAAAGGAGACCAGATGTTGAGTTCGTTTTCGTCTTGGAAGGAAGGTTGGATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGAAGACGTCGAGGCGGTCGTAGTAGATTCCGATGTTGTCGTTAGGGTTCCGGGAGGAGACGGTGACCTGAATGCTGGAGGAGAGGAAGTTTGCGGCGGAGACGTTGAAGAGGAAGACGGTGGCATCTTGGATAATGAATTTGGGCTTTGTGGGCTGAAGAATGGCCCAAATTAA

mRNA sequence

ATGGTAGCGGCCGGAGATGAACGTGCCGACTTTGAATCGGACGTAGCCGTCGAGTTTGATCGACAAGACGACGGTGCCGAAGGACTGGTCCTGGTAGAGAGCGGCGCCGTTGTACGGAGAGATCGGAACGTCGTCGCCGACGAGGAAAGGAGACCAGATGTTGAGTTCGTTTTCGTCTTGGAAGGAAGGTTGGATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGAAGACGTCGAGGCGGTCGTAGTAGATTCCGATGTTGTCGTTAGGGTTCCGGGAGGAGACGGTGACCTGAATGCTGGAGGAGAGGAAGTTTGCGGCGGAGACGTTGAAGAGGAAGACGGTGGCATCTTGGATAATGAATTTGGGCTTTGTGGGCTGAAGAATGGCCCAAATTAA

Coding sequence (CDS)

ATGGTAGCGGCCGGAGATGAACGTGCCGACTTTGAATCGGACGTAGCCGTCGAGTTTGATCGACAAGACGACGGTGCCGAAGGACTGGTCCTGGTAGAGAGCGGCGCCGTTGTACGGAGAGATCGGAACGTCGTCGCCGACGAGGAAAGGAGACCAGATGTTGAGTTCGTTTTCGTCTTGGAAGGAAGGTTGGATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGAAGACGTCGAGGCGGTCGTAGTAGATTCCGATGTTGTCGTTAGGGTTCCGGGAGGAGACGGTGACCTGAATGCTGGAGGAGAGGAAGTTTGCGGCGGAGACGTTGAAGAGGAAGACGGTGGCATCTTGGATAATGAATTTGGGCTTTGTGGGCTGAAGAATGGCCCAAATTAA

Protein sequence

MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVLEGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGILDNEFGLCGLKNGPN
Homology
BLAST of Cp4.1LG19g04840 vs. NCBI nr
Match: TYK04331.1 (hypothetical protein E5676_scaffold21333G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (423), Expect = 3.15e-50
Identity = 90/135 (66.67%), Postives = 103/135 (76.30%), Query Frame = 0

Query: 1   MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVL 60
           MV AGDE  D ESD  VEF+ Q D   GL+L++ GAVV  DRN V DEE RPDVE V  L
Sbjct: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60

Query: 61  EGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGI 120
            GRL+ GTESDLLV V+G DVEAVV+DSD+VV V G DGDL+ GG+EV  GD+EE DGG+
Sbjct: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLDTGGDEVSSGDIEEVDGGV 120

Query: 121 LDNEFGLCGLKNGPN 135
           LD+EFGLC LKNGPN
Sbjct: 121 LDDEFGLCRLKNGPN 135

BLAST of Cp4.1LG19g04840 vs. NCBI nr
Match: RXH76386.1 (hypothetical protein DVH24_019274 [Malus domestica])

HSP 1 Score: 121 bits (304), Expect = 2.78e-32
Identity = 74/134 (55.22%), Postives = 89/134 (66.42%), Query Frame = 0

Query: 1   MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVL 60
           MV  GDE AD   D AV  D Q +    LVL +S  VVR D +V A +ERRPDV+ +  L
Sbjct: 1   MVPTGDEGADLPPDPAVHLDEQKNRPGILVLPQSDGVVRSDGDVGAVDERRPDVDVLVAL 60

Query: 61  EGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGI 120
             R D+  E DLL  V   DVE VVVD+D+VVRV GGDGDL AGGE+V GG VE EDG +
Sbjct: 61  VYRRDERRERDLLRTVGRVDVEPVVVDADLVVRVSGGDGDLEAGGEDVGGGGVEVEDGDV 120

Query: 121 LDNEFGLCGLKNGP 134
           L++E GL GL++GP
Sbjct: 121 LEDEAGLGGLEDGP 134

BLAST of Cp4.1LG19g04840 vs. NCBI nr
Match: GER45898.1 (regulatory particle non-ATPase 10 [Striga asiatica])

HSP 1 Score: 122 bits (306), Expect = 9.56e-32
Identity = 75/134 (55.97%), Postives = 90/134 (67.16%), Query Frame = 0

Query: 1   MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVL 60
           +V+AGDE AD   D AV+FD + DGA GLVL E  AVV  D +VV  +E  PDVE +  L
Sbjct: 70  VVSAGDEGADPPLDAAVDFDGEADGAGGLVLGEGDAVVGCDGDVVGVDEGGPDVEILVAL 129

Query: 61  EGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGI 120
               D G  SDLLV V   D EAVVVD D  VRV  GDGDL  GG++V GGDVE+EDGG+
Sbjct: 130 VHGGDGGGVSDLLVVVVRADGEAVVVDPDAGVRVVRGDGDLECGGDDVRGGDVEDEDGGV 189

Query: 121 LDNEFGLCGLKNGP 134
           L++E G  GL++GP
Sbjct: 190 LEDESGFSGLEDGP 203

BLAST of Cp4.1LG19g04840 vs. NCBI nr
Match: KZV15914.1 (hypothetical protein F511_29086 [Dorcoceras hygrometricum])

HSP 1 Score: 117 bits (294), Expect = 5.08e-30
Identity = 70/135 (51.85%), Postives = 86/135 (63.70%), Query Frame = 0

Query: 1   MVAAGDERADFESDVAVEFDRQ-DDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFV 60
           M+     R DF    A  FDR  D GA  L L E  +VVRRDR+V A +ERRP V+ +  
Sbjct: 3   MIPTRRNRPDFPFQAAFNFDRHLDGGAVALHLGECDSVVRRDRDVAAVDERRPYVDVLVA 62

Query: 61  LEGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGG 120
           L  R DDG E DLLV V G +V+ +VVD+D  V V G DGDL  GGE+V  GDVE EDGG
Sbjct: 63  LVDRRDDGVEGDLLVAVGGVNVQLIVVDADSGVGVAGVDGDLQGGGEDVGSGDVEREDGG 122

Query: 121 ILDNEFGLCGLKNGP 134
           +L++E G  GL++GP
Sbjct: 123 VLESESGFLGLEDGP 137

BLAST of Cp4.1LG19g04840 vs. NCBI nr
Match: KAA8516802.1 (hypothetical protein F0562_017088 [Nyssa sinensis])

HSP 1 Score: 121 bits (303), Expect = 3.03e-29
Identity = 72/134 (53.73%), Postives = 86/134 (64.18%), Query Frame = 0

Query: 2   VAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVLE 61
           V A  E  +F S  ++E D+Q  G  GLVL E  AVVR  R+V   +ERRPDV+      
Sbjct: 292 VPARYEAPNFPSHPSIELDQQQHGPVGLVLAEGDAVVRSHRHVRPVDERRPDVDVFVTFV 351

Query: 62  GRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGIL 121
              + G   DLL  V GEDVE +VV+ DV+VRV GGDGDL  GGEEV GGDVE  DGGIL
Sbjct: 352 SGWNGGHVCDLLAVVGGEDVEFIVVNPDVIVRVSGGDGDLEVGGEEVGGGDVEGVDGGIL 411

Query: 122 DNEFGLCGLKNGPN 135
           ++E  L GL+NGPN
Sbjct: 412 EDELWLFGLQNGPN 425

BLAST of Cp4.1LG19g04840 vs. ExPASy TrEMBL
Match: A0A0A0KKM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454480 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 1.03e-55
Identity = 95/135 (70.37%), Postives = 110/135 (81.48%), Query Frame = 0

Query: 1   MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVL 60
           MVAAGDE  DFESD AVEF+ Q DG  GL+L++ GAVV RD NVV DEE RPDV+ V  L
Sbjct: 1   MVAAGDEGTDFESDAAVEFNGQLDGTNGLILIKGGAVVGRDGNVVTDEEGRPDVDIVVAL 60

Query: 61  EGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGI 120
            G L+ GTESDLLV V+G DVEAVV+DSD+VVRV G DGDL+ GG+EV GG++EE DGG+
Sbjct: 61  VGWLNAGTESDLLVMVNGVDVEAVVIDSDLVVRVTGIDGDLDTGGDEVSGGEIEEVDGGV 120

Query: 121 LDNEFGLCGLKNGPN 135
           LD+EFGLCGLKNGPN
Sbjct: 121 LDDEFGLCGLKNGPN 135

BLAST of Cp4.1LG19g04840 vs. ExPASy TrEMBL
Match: A0A5D3BXB8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21333G00010 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 1.52e-50
Identity = 90/135 (66.67%), Postives = 103/135 (76.30%), Query Frame = 0

Query: 1   MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVL 60
           MV AGDE  D ESD  VEF+ Q D   GL+L++ GAVV  DRN V DEE RPDVE V  L
Sbjct: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60

Query: 61  EGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGI 120
            GRL+ GTESDLLV V+G DVEAVV+DSD+VV V G DGDL+ GG+EV  GD+EE DGG+
Sbjct: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLDTGGDEVSSGDIEEVDGGV 120

Query: 121 LDNEFGLCGLKNGPN 135
           LD+EFGLC LKNGPN
Sbjct: 121 LDDEFGLCRLKNGPN 135

BLAST of Cp4.1LG19g04840 vs. ExPASy TrEMBL
Match: A0A498HYB9 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_019274 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 1.34e-32
Identity = 74/134 (55.22%), Postives = 89/134 (66.42%), Query Frame = 0

Query: 1   MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVL 60
           MV  GDE AD   D AV  D Q +    LVL +S  VVR D +V A +ERRPDV+ +  L
Sbjct: 1   MVPTGDEGADLPPDPAVHLDEQKNRPGILVLPQSDGVVRSDGDVGAVDERRPDVDVLVAL 60

Query: 61  EGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGI 120
             R D+  E DLL  V   DVE VVVD+D+VVRV GGDGDL AGGE+V GG VE EDG +
Sbjct: 61  VYRRDERRERDLLRTVGRVDVEPVVVDADLVVRVSGGDGDLEAGGEDVGGGGVEVEDGDV 120

Query: 121 LDNEFGLCGLKNGP 134
           L++E GL GL++GP
Sbjct: 121 LEDEAGLGGLEDGP 134

BLAST of Cp4.1LG19g04840 vs. ExPASy TrEMBL
Match: A0A5A7QLV4 (Regulatory particle non-ATPase 10 OS=Striga asiatica OX=4170 GN=STAS_22889 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 4.63e-32
Identity = 75/134 (55.97%), Postives = 90/134 (67.16%), Query Frame = 0

Query: 1   MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVL 60
           +V+AGDE AD   D AV+FD + DGA GLVL E  AVV  D +VV  +E  PDVE +  L
Sbjct: 70  VVSAGDEGADPPLDAAVDFDGEADGAGGLVLGEGDAVVGCDGDVVGVDEGGPDVEILVAL 129

Query: 61  EGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGI 120
               D G  SDLLV V   D EAVVVD D  VRV  GDGDL  GG++V GGDVE+EDGG+
Sbjct: 130 VHGGDGGGVSDLLVVVVRADGEAVVVDPDAGVRVVRGDGDLECGGDDVRGGDVEDEDGGV 189

Query: 121 LDNEFGLCGLKNGP 134
           L++E G  GL++GP
Sbjct: 190 LEDESGFSGLEDGP 203

BLAST of Cp4.1LG19g04840 vs. ExPASy TrEMBL
Match: A0A2Z7A2Z7 (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_29086 PE=4 SV=1)

HSP 1 Score: 117 bits (294), Expect = 2.46e-30
Identity = 70/135 (51.85%), Postives = 86/135 (63.70%), Query Frame = 0

Query: 1   MVAAGDERADFESDVAVEFDRQ-DDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFV 60
           M+     R DF    A  FDR  D GA  L L E  +VVRRDR+V A +ERRP V+ +  
Sbjct: 3   MIPTRRNRPDFPFQAAFNFDRHLDGGAVALHLGECDSVVRRDRDVAAVDERRPYVDVLVA 62

Query: 61  LEGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGG 120
           L  R DDG E DLLV V G +V+ +VVD+D  V V G DGDL  GGE+V  GDVE EDGG
Sbjct: 63  LVDRRDDGVEGDLLVAVGGVNVQLIVVDADSGVGVAGVDGDLQGGGEDVGSGDVEREDGG 122

Query: 121 ILDNEFGLCGLKNGP 134
           +L++E G  GL++GP
Sbjct: 123 VLESESGFLGLEDGP 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
TYK04331.13.15e-5066.67hypothetical protein E5676_scaffold21333G00010 [Cucumis melo var. makuwa][more]
RXH76386.12.78e-3255.22hypothetical protein DVH24_019274 [Malus domestica][more]
GER45898.19.56e-3255.97regulatory particle non-ATPase 10 [Striga asiatica][more]
KZV15914.15.08e-3051.85hypothetical protein F511_29086 [Dorcoceras hygrometricum][more]
KAA8516802.13.03e-2953.73hypothetical protein F0562_017088 [Nyssa sinensis][more]
Match NameE-valueIdentityDescription
A0A0A0KKM01.03e-5570.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454480 PE=4 SV=1[more]
A0A5D3BXB81.52e-5066.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A498HYB91.34e-3255.22Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_019274 PE=4 SV=1[more]
A0A5A7QLV44.63e-3255.97Regulatory particle non-ATPase 10 OS=Striga asiatica OX=4170 GN=STAS_22889 PE=4 ... [more]
A0A2Z7A2Z72.46e-3051.85Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_29086 PE=4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g04840.1Cp4.1LG19g04840.1mRNA