Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCGGCCGGAGATGAACGTGCCGACTTTGAATCGGACGTAGCCGTCGAGTTTGATCGACAAGACGACGGTGCCGAAGGACTGGTCCTGGTAGAGAGCGGCGCCGTTGTACGGAGAGATCGGAACGTCGTCGCCGACGAGGAAAGGAGACCAGATGTTGAGTTCGTTTTCGTCTTGGAAGGAAGGTTGGATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGAAGACGTCGAGGCGGTCGTAGTAGATTCCGATGTTGTCGTTAGGGTTCCGGGAGGAGACGGTGACCTGAATGCTGGAGGAGAGGAAGTTTGCGGCGGAGACGTTGAAGAGGAAGACGGTGGCATCTTGGATAATGAATTTGGGCTTTGTGGGCTGAAGAATGGCCCAAATTAA
mRNA sequence
ATGGTAGCGGCCGGAGATGAACGTGCCGACTTTGAATCGGACGTAGCCGTCGAGTTTGATCGACAAGACGACGGTGCCGAAGGACTGGTCCTGGTAGAGAGCGGCGCCGTTGTACGGAGAGATCGGAACGTCGTCGCCGACGAGGAAAGGAGACCAGATGTTGAGTTCGTTTTCGTCTTGGAAGGAAGGTTGGATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGAAGACGTCGAGGCGGTCGTAGTAGATTCCGATGTTGTCGTTAGGGTTCCGGGAGGAGACGGTGACCTGAATGCTGGAGGAGAGGAAGTTTGCGGCGGAGACGTTGAAGAGGAAGACGGTGGCATCTTGGATAATGAATTTGGGCTTTGTGGGCTGAAGAATGGCCCAAATTAA
Coding sequence (CDS)
ATGGTAGCGGCCGGAGATGAACGTGCCGACTTTGAATCGGACGTAGCCGTCGAGTTTGATCGACAAGACGACGGTGCCGAAGGACTGGTCCTGGTAGAGAGCGGCGCCGTTGTACGGAGAGATCGGAACGTCGTCGCCGACGAGGAAAGGAGACCAGATGTTGAGTTCGTTTTCGTCTTGGAAGGAAGGTTGGATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGAAGACGTCGAGGCGGTCGTAGTAGATTCCGATGTTGTCGTTAGGGTTCCGGGAGGAGACGGTGACCTGAATGCTGGAGGAGAGGAAGTTTGCGGCGGAGACGTTGAAGAGGAAGACGGTGGCATCTTGGATAATGAATTTGGGCTTTGTGGGCTGAAGAATGGCCCAAATTAA
Protein sequence
MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVLEGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGILDNEFGLCGLKNGPN
Homology
BLAST of Cp4.1LG19g04840 vs. NCBI nr
Match:
TYK04331.1 (hypothetical protein E5676_scaffold21333G00010 [Cucumis melo var. makuwa])
HSP 1 Score: 167 bits (423), Expect = 3.15e-50
Identity = 90/135 (66.67%), Postives = 103/135 (76.30%), Query Frame = 0
Query: 1 MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVL 60
MV AGDE D ESD VEF+ Q D GL+L++ GAVV DRN V DEE RPDVE V L
Sbjct: 1 MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60
Query: 61 EGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGI 120
GRL+ GTESDLLV V+G DVEAVV+DSD+VV V G DGDL+ GG+EV GD+EE DGG+
Sbjct: 61 VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLDTGGDEVSSGDIEEVDGGV 120
Query: 121 LDNEFGLCGLKNGPN 135
LD+EFGLC LKNGPN
Sbjct: 121 LDDEFGLCRLKNGPN 135
BLAST of Cp4.1LG19g04840 vs. NCBI nr
Match:
RXH76386.1 (hypothetical protein DVH24_019274 [Malus domestica])
HSP 1 Score: 121 bits (304), Expect = 2.78e-32
Identity = 74/134 (55.22%), Postives = 89/134 (66.42%), Query Frame = 0
Query: 1 MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVL 60
MV GDE AD D AV D Q + LVL +S VVR D +V A +ERRPDV+ + L
Sbjct: 1 MVPTGDEGADLPPDPAVHLDEQKNRPGILVLPQSDGVVRSDGDVGAVDERRPDVDVLVAL 60
Query: 61 EGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGI 120
R D+ E DLL V DVE VVVD+D+VVRV GGDGDL AGGE+V GG VE EDG +
Sbjct: 61 VYRRDERRERDLLRTVGRVDVEPVVVDADLVVRVSGGDGDLEAGGEDVGGGGVEVEDGDV 120
Query: 121 LDNEFGLCGLKNGP 134
L++E GL GL++GP
Sbjct: 121 LEDEAGLGGLEDGP 134
BLAST of Cp4.1LG19g04840 vs. NCBI nr
Match:
GER45898.1 (regulatory particle non-ATPase 10 [Striga asiatica])
HSP 1 Score: 122 bits (306), Expect = 9.56e-32
Identity = 75/134 (55.97%), Postives = 90/134 (67.16%), Query Frame = 0
Query: 1 MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVL 60
+V+AGDE AD D AV+FD + DGA GLVL E AVV D +VV +E PDVE + L
Sbjct: 70 VVSAGDEGADPPLDAAVDFDGEADGAGGLVLGEGDAVVGCDGDVVGVDEGGPDVEILVAL 129
Query: 61 EGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGI 120
D G SDLLV V D EAVVVD D VRV GDGDL GG++V GGDVE+EDGG+
Sbjct: 130 VHGGDGGGVSDLLVVVVRADGEAVVVDPDAGVRVVRGDGDLECGGDDVRGGDVEDEDGGV 189
Query: 121 LDNEFGLCGLKNGP 134
L++E G GL++GP
Sbjct: 190 LEDESGFSGLEDGP 203
BLAST of Cp4.1LG19g04840 vs. NCBI nr
Match:
KZV15914.1 (hypothetical protein F511_29086 [Dorcoceras hygrometricum])
HSP 1 Score: 117 bits (294), Expect = 5.08e-30
Identity = 70/135 (51.85%), Postives = 86/135 (63.70%), Query Frame = 0
Query: 1 MVAAGDERADFESDVAVEFDRQ-DDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFV 60
M+ R DF A FDR D GA L L E +VVRRDR+V A +ERRP V+ +
Sbjct: 3 MIPTRRNRPDFPFQAAFNFDRHLDGGAVALHLGECDSVVRRDRDVAAVDERRPYVDVLVA 62
Query: 61 LEGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGG 120
L R DDG E DLLV V G +V+ +VVD+D V V G DGDL GGE+V GDVE EDGG
Sbjct: 63 LVDRRDDGVEGDLLVAVGGVNVQLIVVDADSGVGVAGVDGDLQGGGEDVGSGDVEREDGG 122
Query: 121 ILDNEFGLCGLKNGP 134
+L++E G GL++GP
Sbjct: 123 VLESESGFLGLEDGP 137
BLAST of Cp4.1LG19g04840 vs. NCBI nr
Match:
KAA8516802.1 (hypothetical protein F0562_017088 [Nyssa sinensis])
HSP 1 Score: 121 bits (303), Expect = 3.03e-29
Identity = 72/134 (53.73%), Postives = 86/134 (64.18%), Query Frame = 0
Query: 2 VAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVLE 61
V A E +F S ++E D+Q G GLVL E AVVR R+V +ERRPDV+
Sbjct: 292 VPARYEAPNFPSHPSIELDQQQHGPVGLVLAEGDAVVRSHRHVRPVDERRPDVDVFVTFV 351
Query: 62 GRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGIL 121
+ G DLL V GEDVE +VV+ DV+VRV GGDGDL GGEEV GGDVE DGGIL
Sbjct: 352 SGWNGGHVCDLLAVVGGEDVEFIVVNPDVIVRVSGGDGDLEVGGEEVGGGDVEGVDGGIL 411
Query: 122 DNEFGLCGLKNGPN 135
++E L GL+NGPN
Sbjct: 412 EDELWLFGLQNGPN 425
BLAST of Cp4.1LG19g04840 vs. ExPASy TrEMBL
Match:
A0A0A0KKM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454480 PE=4 SV=1)
HSP 1 Score: 180 bits (457), Expect = 1.03e-55
Identity = 95/135 (70.37%), Postives = 110/135 (81.48%), Query Frame = 0
Query: 1 MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVL 60
MVAAGDE DFESD AVEF+ Q DG GL+L++ GAVV RD NVV DEE RPDV+ V L
Sbjct: 1 MVAAGDEGTDFESDAAVEFNGQLDGTNGLILIKGGAVVGRDGNVVTDEEGRPDVDIVVAL 60
Query: 61 EGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGI 120
G L+ GTESDLLV V+G DVEAVV+DSD+VVRV G DGDL+ GG+EV GG++EE DGG+
Sbjct: 61 VGWLNAGTESDLLVMVNGVDVEAVVIDSDLVVRVTGIDGDLDTGGDEVSGGEIEEVDGGV 120
Query: 121 LDNEFGLCGLKNGPN 135
LD+EFGLCGLKNGPN
Sbjct: 121 LDDEFGLCGLKNGPN 135
BLAST of Cp4.1LG19g04840 vs. ExPASy TrEMBL
Match:
A0A5D3BXB8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21333G00010 PE=4 SV=1)
HSP 1 Score: 167 bits (423), Expect = 1.52e-50
Identity = 90/135 (66.67%), Postives = 103/135 (76.30%), Query Frame = 0
Query: 1 MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVL 60
MV AGDE D ESD VEF+ Q D GL+L++ GAVV DRN V DEE RPDVE V L
Sbjct: 1 MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60
Query: 61 EGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGI 120
GRL+ GTESDLLV V+G DVEAVV+DSD+VV V G DGDL+ GG+EV GD+EE DGG+
Sbjct: 61 VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLDTGGDEVSSGDIEEVDGGV 120
Query: 121 LDNEFGLCGLKNGPN 135
LD+EFGLC LKNGPN
Sbjct: 121 LDDEFGLCRLKNGPN 135
BLAST of Cp4.1LG19g04840 vs. ExPASy TrEMBL
Match:
A0A498HYB9 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_019274 PE=4 SV=1)
HSP 1 Score: 121 bits (304), Expect = 1.34e-32
Identity = 74/134 (55.22%), Postives = 89/134 (66.42%), Query Frame = 0
Query: 1 MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVL 60
MV GDE AD D AV D Q + LVL +S VVR D +V A +ERRPDV+ + L
Sbjct: 1 MVPTGDEGADLPPDPAVHLDEQKNRPGILVLPQSDGVVRSDGDVGAVDERRPDVDVLVAL 60
Query: 61 EGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGI 120
R D+ E DLL V DVE VVVD+D+VVRV GGDGDL AGGE+V GG VE EDG +
Sbjct: 61 VYRRDERRERDLLRTVGRVDVEPVVVDADLVVRVSGGDGDLEAGGEDVGGGGVEVEDGDV 120
Query: 121 LDNEFGLCGLKNGP 134
L++E GL GL++GP
Sbjct: 121 LEDEAGLGGLEDGP 134
BLAST of Cp4.1LG19g04840 vs. ExPASy TrEMBL
Match:
A0A5A7QLV4 (Regulatory particle non-ATPase 10 OS=Striga asiatica OX=4170 GN=STAS_22889 PE=4 SV=1)
HSP 1 Score: 122 bits (306), Expect = 4.63e-32
Identity = 75/134 (55.97%), Postives = 90/134 (67.16%), Query Frame = 0
Query: 1 MVAAGDERADFESDVAVEFDRQDDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFVL 60
+V+AGDE AD D AV+FD + DGA GLVL E AVV D +VV +E PDVE + L
Sbjct: 70 VVSAGDEGADPPLDAAVDFDGEADGAGGLVLGEGDAVVGCDGDVVGVDEGGPDVEILVAL 129
Query: 61 EGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGGI 120
D G SDLLV V D EAVVVD D VRV GDGDL GG++V GGDVE+EDGG+
Sbjct: 130 VHGGDGGGVSDLLVVVVRADGEAVVVDPDAGVRVVRGDGDLECGGDDVRGGDVEDEDGGV 189
Query: 121 LDNEFGLCGLKNGP 134
L++E G GL++GP
Sbjct: 190 LEDESGFSGLEDGP 203
BLAST of Cp4.1LG19g04840 vs. ExPASy TrEMBL
Match:
A0A2Z7A2Z7 (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_29086 PE=4 SV=1)
HSP 1 Score: 117 bits (294), Expect = 2.46e-30
Identity = 70/135 (51.85%), Postives = 86/135 (63.70%), Query Frame = 0
Query: 1 MVAAGDERADFESDVAVEFDRQ-DDGAEGLVLVESGAVVRRDRNVVADEERRPDVEFVFV 60
M+ R DF A FDR D GA L L E +VVRRDR+V A +ERRP V+ +
Sbjct: 3 MIPTRRNRPDFPFQAAFNFDRHLDGGAVALHLGECDSVVRRDRDVAAVDERRPYVDVLVA 62
Query: 61 LEGRLDDGTESDLLVPVDGEDVEAVVVDSDVVVRVPGGDGDLNAGGEEVCGGDVEEEDGG 120
L R DDG E DLLV V G +V+ +VVD+D V V G DGDL GGE+V GDVE EDGG
Sbjct: 63 LVDRRDDGVEGDLLVAVGGVNVQLIVVDADSGVGVAGVDGDLQGGGEDVGSGDVEREDGG 122
Query: 121 ILDNEFGLCGLKNGP 134
+L++E G GL++GP
Sbjct: 123 VLESESGFLGLEDGP 137
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
TYK04331.1 | 3.15e-50 | 66.67 | hypothetical protein E5676_scaffold21333G00010 [Cucumis melo var. makuwa] | [more] |
RXH76386.1 | 2.78e-32 | 55.22 | hypothetical protein DVH24_019274 [Malus domestica] | [more] |
GER45898.1 | 9.56e-32 | 55.97 | regulatory particle non-ATPase 10 [Striga asiatica] | [more] |
KZV15914.1 | 5.08e-30 | 51.85 | hypothetical protein F511_29086 [Dorcoceras hygrometricum] | [more] |
KAA8516802.1 | 3.03e-29 | 53.73 | hypothetical protein F0562_017088 [Nyssa sinensis] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KKM0 | 1.03e-55 | 70.37 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454480 PE=4 SV=1 | [more] |
A0A5D3BXB8 | 1.52e-50 | 66.67 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A498HYB9 | 1.34e-32 | 55.22 | Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_019274 PE=4 SV=1 | [more] |
A0A5A7QLV4 | 4.63e-32 | 55.97 | Regulatory particle non-ATPase 10 OS=Striga asiatica OX=4170 GN=STAS_22889 PE=4 ... | [more] |
A0A2Z7A2Z7 | 2.46e-30 | 51.85 | Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_29086 PE=4... | [more] |
Match Name | E-value | Identity | Description | |