Cp4.1LG19g04800 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g04800
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ring finger protein, putative
Location	Cp4.1LG19: 4306471 .. 4306998 (+)
RNA-Seq Expression	Cp4.1LG19g04800
Synteny	Cp4.1LG19g04800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACGGCACCGACGACGGCGGCGGATTTCTGTCCTCAGGCAACATCGGCGGAGACGGATATGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGCACCAGAGTCGCCCAATCACCGACCTCCGGGATTCAGAGCAACGCCAATCTCTCGCCGCCGCCGCCGCCTCGGCTGGCGGAGGAGGATGCCGTTGTTGTCGTCGATATCGGAATCGATCAGGAGACGATTAGGAATTTTCCGAAATTGCTGTATTCAGAGGCGAAGATTCAGAACAACGATTCCTCTGCTTCTTGTTGCTCTATCTGTTTGGCCGATTACAAAAACTCCGATGTTCTTCGGATTTTGCCTGATTGCGGTCATTTGTTCCATCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCACCCAACCTGTCCGTTTTGCCGGACCTCGCCTATTCCGACGCCGTTATCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGATGGCACGGTTGA

mRNA sequence

ATGAACAACGGCACCGACGACGGCGGCGGATTTCTGTCCTCAGGCAACATCGGCGGAGACGGATATGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGCACCAGAGTCGCCCAATCACCGACCTCCGGGATTCAGAGCAACGCCAATCTCTCGCCGCCGCCGCCGCCTCGGCTGGCGGAGGAGGATGCCGTTGTTGTCGTCGATATCGGAATCGATCAGGAGACGATTAGGAATTTTCCGAAATTGCTGTATTCAGAGGCGAAGATTCAGAACAACGATTCCTCTGCTTCTTGTTGCTCTATCTGTTTGGCCGATTACAAAAACTCCGATGTTCTTCGGATTTTGCCTGATTGCGGTCATTTGTTCCATCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCACCCAACCTGTCCGTTTTGCCGGACCTCGCCTATTCCGACGCCGTTATCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGATGGCACGGTTGA

Coding sequence (CDS)

ATGAACAACGGCACCGACGACGGCGGCGGATTTCTGTCCTCAGGCAACATCGGCGGAGACGGATATGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGCACCAGAGTCGCCCAATCACCGACCTCCGGGATTCAGAGCAACGCCAATCTCTCGCCGCCGCCGCCGCCTCGGCTGGCGGAGGAGGATGCCGTTGTTGTCGTCGATATCGGAATCGATCAGGAGACGATTAGGAATTTTCCGAAATTGCTGTATTCAGAGGCGAAGATTCAGAACAACGATTCCTCTGCTTCTTGTTGCTCTATCTGTTTGGCCGATTACAAAAACTCCGATGTTCTTCGGATTTTGCCTGATTGCGGTCATTTGTTCCATCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCACCCAACCTGTCCGTTTTGCCGGACCTCGCCTATTCCGACGCCGTTATCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGATGGCACGGTTGA

Protein sequence

MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNANLSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLARWHG

Homology

[Close]

BLAST of Cp4.1LG19g04800 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.3e-45
Identity = 96/167 (57.49%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 7   DGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNANLSPPPP 66
           D  G L + +IGG  YGIGVS+G+L+LITTI L SYYCTR  Q  +S  Q+N + +    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTR-NQLSSSPSQTNQDST---- 110

Query: 67  PRLAEEDAVVVVDI--GIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLR 126
            R+      V++D+  G+D++TI+++PK+LYSEAK     ++ASCC+ICL DYK   +LR
Sbjct: 111 -RIHHHHHHVIIDVVPGLDEDTIQSYPKILYSEAK---GPTTASCCAICLGDYKGKHLLR 170

Query: 127 ILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLA 172
            LPDC HLFHLKC+D WLRL+PTCP CRTSP+PTPLSTPLAE VPLA
Sbjct: 171 QLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLA 208

[Close]

BLAST of Cp4.1LG19g04800 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.7e-44
Identity = 96/182 (52.75%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 8   GGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTR--VAQSPTS-------GIQSN 67
           G    ++  +GG  YGIGVS+G+L+LITTI L SYYCTR  ++ SPT+         +SN
Sbjct: 11  GHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESN 70

Query: 68  ANLSPPPPPRL----AEEDAVVVVDIGIDQETIRNFPKLLYSEAKI----QNNDSSASCC 127
             L PP   R      E D VVV  +G+ +E I+ FPKL Y EA++    Q   S+ SCC
Sbjct: 71  GTL-PPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 130

Query: 128 SICLADYKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPL 173
           SICLADYK  D++R+LPDC HLFH  CVDPWLRLHPTCP CRTSP+P+P  TP+A+ VP 
Sbjct: 131 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 190

[Close]

BLAST of Cp4.1LG19g04800 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-28
Identity = 69/172 (40.12%), Postives = 110/172 (63.95%), Query Frame = 0


Query: 19  GDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQS----NANLSPPPPPRLAEEDA 78
           G GY I ++LG L+L++T+LL+SY C R ++  T+ ++S      ++  P    +AEED 
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  VVV----VDIGIDQETIRNFPKLLYS-EAKIQNND----SSASCCSICLADYKNSDVLRI 138
             +    V +G+DQ  I ++PK  +S +    ++D       + CSICL +YK +++LR+
Sbjct: 94  EDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRM 153

Query: 139 LPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIP----TPLSTPLAEQVPLARW 174
           +P+C H FHL C+D WL+L+ +CP CR SP+P    TPLSTPL+E VPL+++
Sbjct: 154 MPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLSQY 205

[Close]

BLAST of Cp4.1LG19g04800 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.1e-26
Identity = 68/179 (37.99%), Postives = 105/179 (58.66%), Query Frame = 0


Query: 19  GDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNANLSPPPPPR---------L 78
           G GY I ++LG L+LI+TI+L+SY C R ++   S   +NAN +     R         +
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 79  AEEDAVV---VVDIGIDQETIRNFPKLLYSE--AKIQNND------SSASCCSICLADYK 138
           AE+D +    VV  G+D   I ++PK  +++    + N D         + CSICL +Y 
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYM 144

Query: 139 NSDVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIP----TPLSTPLAEQVPLARW 174
             ++LR++P+C H FH+ C+D WL+L+ +CP CR SP+P    TP STPL+E VPL+++
Sbjct: 145 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLSQY 203

[Close]

BLAST of Cp4.1LG19g04800 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-25
Identity = 59/153 (38.56%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 19  GDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNANLSPPPPPRLAEEDAVVVV 78
           G GYGI +++ +L+LI+ I+LASY C R   +      S+  L  P P           V
Sbjct: 12  GLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSP--------AAEV 71

Query: 79  DIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLRILPDCGHLFHLKCV 138
            +G+D+  I ++P+++  +++     ++   CSICL DY+  + +R +P+C H FH  CV
Sbjct: 72  KLGLDRPVIESYPRIVLGDSRRLPRPNNGP-CSICLCDYEAREPVRCIPECNHCFHTDCV 131

Query: 139 DPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLA 172
           D WLR   TCP CR SP P+ L+TPL++ VPLA
Sbjct: 132 DEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Cp4.1LG19g04800 vs. NCBI nr
Match: XP_023518789.1 (RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358 bits (919), Expect = 8.02e-125
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNAN 60
           MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNAN
Sbjct: 1   MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNAN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
           LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS
Sbjct: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLARWHG 175
           DVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLARWHG
Sbjct: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLARWHG 175

[Close]

BLAST of Cp4.1LG19g04800 vs. NCBI nr
Match: KAG6595151.1 (putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 339 bits (869), Expect = 3.05e-117
Identity = 168/172 (97.67%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNAN 60
           MNNGTDDGGGFLSSGNIGG GYGIGVSLGLLILITTILLASYYCTRV QSPTSGIQ+NAN
Sbjct: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNAN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
           LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS
Sbjct: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLAR 172
           DVLRILPDCGHLFHLKCVDPWLRLHPTCP CRTSPIPTPLSTPLAEQVPLAR
Sbjct: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR 172

[Close]

BLAST of Cp4.1LG19g04800 vs. NCBI nr
Match: XP_022963187.1 (RING-H2 finger protein ATL70-like [Cucurbita moschata] >KAG7027167.1 putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 337 bits (865), Expect = 1.24e-116
Identity = 167/172 (97.09%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNAN 60
           MNNGTDDGGGFLSSGNIGG GYGIGVSLGLLILITTILLASYYCTRV QSPTSGIQ+N N
Sbjct: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
           LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS
Sbjct: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLAR 172
           DVLRILPDCGHLFHLKCVDPWLRLHPTCP CRTSPIPTPLSTPLAEQVPLAR
Sbjct: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR 172

[Close]

BLAST of Cp4.1LG19g04800 vs. NCBI nr
Match: XP_023544988.1 (RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273 bits (699), Expect = 2.41e-91
Identity = 137/171 (80.12%), Postives = 149/171 (87.13%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNAN 60
           MNNGT D GGFLSS NIGG GYGIGVSLGLLILITTILLASYYCTR   S TS ++ N+N
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
            SPP     AE +A VVVD+G+DQETI+++PKLLYSEAK+  NDSSASCCSICLADYKNS
Sbjct: 61  RSPPQ----AEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLA 171
           +VLR LPDCGHLFHLKC+DPWLRLHPTCP CRTSPIPTPLSTPLAEQVPLA
Sbjct: 121 NVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 167

[Close]

BLAST of Cp4.1LG19g04800 vs. NCBI nr
Match: XP_022977896.1 (RING-H2 finger protein ATL70-like [Cucurbita maxima])

HSP 1 Score: 273 bits (698), Expect = 3.43e-91
Identity = 137/171 (80.12%), Postives = 148/171 (86.55%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNAN 60
           MNNGT D GGFLSS NIGG GYGIGVSLGLLILITTILLASYYCTR   S TS ++ N N
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNTN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
            SPP     AE +A VVVD+G+DQETI+++PKLLYSEAK+  NDSSASCCSICLADYKNS
Sbjct: 61  RSPPQ----AEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLA 171
           +VLR LPDCGHLFHLKC+DPWLRLHPTCP CRTSPIPTPLSTPLAEQVPLA
Sbjct: 121 NVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 167

[Close]

BLAST of Cp4.1LG19g04800 vs. ExPASy TrEMBL
Match: A0A6J1HEI7 (RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111463471 PE=4 SV=1)

HSP 1 Score: 337 bits (865), Expect = 6.01e-117
Identity = 167/172 (97.09%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNAN 60
           MNNGTDDGGGFLSSGNIGG GYGIGVSLGLLILITTILLASYYCTRV QSPTSGIQ+N N
Sbjct: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
           LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS
Sbjct: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLAR 172
           DVLRILPDCGHLFHLKCVDPWLRLHPTCP CRTSPIPTPLSTPLAEQVPLAR
Sbjct: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR 172

[Close]

BLAST of Cp4.1LG19g04800 vs. ExPASy TrEMBL
Match: A0A6J1IL86 (RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111478050 PE=4 SV=1)

HSP 1 Score: 273 bits (698), Expect = 1.66e-91
Identity = 137/171 (80.12%), Postives = 148/171 (86.55%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNAN 60
           MNNGT D GGFLSS NIGG GYGIGVSLGLLILITTILLASYYCTR   S TS ++ N N
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNTN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
            SPP     AE +A VVVD+G+DQETI+++PKLLYSEAK+  NDSSASCCSICLADYKNS
Sbjct: 61  RSPPQ----AEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLA 171
           +VLR LPDCGHLFHLKC+DPWLRLHPTCP CRTSPIPTPLSTPLAEQVPLA
Sbjct: 121 NVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 167

[Close]

BLAST of Cp4.1LG19g04800 vs. ExPASy TrEMBL
Match: A0A6J1EJP9 (RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111433226 PE=4 SV=1)

HSP 1 Score: 272 bits (695), Expect = 4.75e-91
Identity = 136/171 (79.53%), Postives = 148/171 (86.55%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNAN 60
           MNNGT D GGFLSS NIGG GYGIGVSLGLLILITTILLASYYCTR   S TS ++ N+N
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
            SPP     AE +A  VVD+G+DQETI+++PKLLYSEAK+  NDSSASCCSICLADYKNS
Sbjct: 61  RSPPQ----AEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLA 171
           +VLR LPDCGHLFHLKC+DPWLRLHPTCP CRTSPIPTPLSTPLAEQVPLA
Sbjct: 121 NVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 167

[Close]

BLAST of Cp4.1LG19g04800 vs. ExPASy TrEMBL
Match: A0A5A7SKL1 (RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001830 PE=4 SV=1)

HSP 1 Score: 270 bits (691), Expect = 2.00e-90
Identity = 140/171 (81.87%), Postives = 151/171 (88.30%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNAN 60
           MNNGT + GGFLSS NIGG GYGIGVSLGLLILITTILLASYYCTR   S TS IQS A+
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
            SPP    +AE D+VVV +IG+DQETI ++PKLLYSEAK+Q NDS+ASCCSICLADYKNS
Sbjct: 61  RSPPQ--AVAELDSVVV-EIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLA 171
           DVLR+LPDCGHLFHLKCVDPWLRLHPTCP CRTSPIPTPLSTPLAEQVPLA
Sbjct: 121 DVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168

[Close]

BLAST of Cp4.1LG19g04800 vs. ExPASy TrEMBL
Match: A0A1S3CHE9 (RING-H2 finger protein ATL70-like OS=Cucumis melo OX=3656 GN=LOC103500941 PE=4 SV=1)

HSP 1 Score: 270 bits (691), Expect = 2.00e-90
Identity = 140/171 (81.87%), Postives = 151/171 (88.30%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNAN 60
           MNNGT + GGFLSS NIGG GYGIGVSLGLLILITTILLASYYCTR   S TS IQS A+
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
            SPP    +AE D+VVV +IG+DQETI ++PKLLYSEAK+Q NDS+ASCCSICLADYKNS
Sbjct: 61  RSPPQ--AVAELDSVVV-EIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLA 171
           DVLR+LPDCGHLFHLKCVDPWLRLHPTCP CRTSPIPTPLSTPLAEQVPLA
Sbjct: 121 DVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168

[Close]

BLAST of Cp4.1LG19g04800 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 184.1 bits (466), Expect = 9.6e-47
Identity = 96/167 (57.49%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 7   DGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNANLSPPPP 66
           D  G L + +IGG  YGIGVS+G+L+LITTI L SYYCTR  Q  +S  Q+N + +    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTR-NQLSSSPSQTNQDST---- 110

Query: 67  PRLAEEDAVVVVDI--GIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLR 126
            R+      V++D+  G+D++TI+++PK+LYSEAK     ++ASCC+ICL DYK   +LR
Sbjct: 111 -RIHHHHHHVIIDVVPGLDEDTIQSYPKILYSEAK---GPTTASCCAICLGDYKGKHLLR 170

Query: 127 ILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLA 172
            LPDC HLFHLKC+D WLRL+PTCP CRTSP+PTPLSTPLAE VPLA
Sbjct: 171 QLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLA 208

[Close]

BLAST of Cp4.1LG19g04800 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 178.7 bits (452), Expect = 4.0e-45
Identity = 96/182 (52.75%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 8   GGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTR--VAQSPTS-------GIQSN 67
           G    ++  +GG  YGIGVS+G+L+LITTI L SYYCTR  ++ SPT+         +SN
Sbjct: 11  GHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESN 70

Query: 68  ANLSPPPPPRL----AEEDAVVVVDIGIDQETIRNFPKLLYSEAKI----QNNDSSASCC 127
             L PP   R      E D VVV  +G+ +E I+ FPKL Y EA++    Q   S+ SCC
Sbjct: 71  GTL-PPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 130

Query: 128 SICLADYKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPL 173
           SICLADYK  D++R+LPDC HLFH  CVDPWLRLHPTCP CRTSP+P+P  TP+A+ VP 
Sbjct: 131 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 190

[Close]

BLAST of Cp4.1LG19g04800 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-29
Identity = 69/172 (40.12%), Postives = 110/172 (63.95%), Query Frame = 0


Query: 19  GDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQS----NANLSPPPPPRLAEEDA 78
           G GY I ++LG L+L++T+LL+SY C R ++  T+ ++S      ++  P    +AEED 
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  VVV----VDIGIDQETIRNFPKLLYS-EAKIQNND----SSASCCSICLADYKNSDVLRI 138
             +    V +G+DQ  I ++PK  +S +    ++D       + CSICL +YK +++LR+
Sbjct: 94  EDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRM 153

Query: 139 LPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIP----TPLSTPLAEQVPLARW 174
           +P+C H FHL C+D WL+L+ +CP CR SP+P    TPLSTPL+E VPL+++
Sbjct: 154 MPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLSQY 205

[Close]

BLAST of Cp4.1LG19g04800 vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 2.9e-27
Identity = 68/179 (37.99%), Postives = 105/179 (58.66%), Query Frame = 0


Query: 19  GDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNANLSPPPPPR---------L 78
           G GY I ++LG L+LI+TI+L+SY C R ++   S   +NAN +     R         +
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 79  AEEDAVV---VVDIGIDQETIRNFPKLLYSE--AKIQNND------SSASCCSICLADYK 138
           AE+D +    VV  G+D   I ++PK  +++    + N D         + CSICL +Y 
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYM 144

Query: 139 NSDVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIP----TPLSTPLAEQVPLARW 174
             ++LR++P+C H FH+ C+D WL+L+ +CP CR SP+P    TP STPL+E VPL+++
Sbjct: 145 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLSQY 203

[Close]

BLAST of Cp4.1LG19g04800 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 117.9 bits (294), Expect = 8.4e-27
Identity = 59/153 (38.56%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 19  GDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNANLSPPPPPRLAEEDAVVVV 78
           G GYGI +++ +L+LI+ I+LASY C R   +      S+  L  P P           V
Sbjct: 12  GLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSP--------AAEV 71

Query: 79  DIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLRILPDCGHLFHLKCV 138
            +G+D+  I ++P+++  +++     ++   CSICL DY+  + +R +P+C H FH  CV
Sbjct: 72  KLGLDRPVIESYPRIVLGDSRRLPRPNNGP-CSICLCDYEAREPVRCIPECNHCFHTDCV 131

Query: 139 DPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLA 172
           D WLR   TCP CR SP P+ L+TPL++ VPLA
Sbjct: 132 DEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g04800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RX29	1.3e-45	57.49	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9FG21	5.7e-44	52.75	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
O82353	2.0e-28	40.12	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
Q9M313	4.1e-26	37.99	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]
Q9FL42	1.2e-25	38.56	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]

BLAST of Cp4.1LG19g04800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518789.1	8.02e-125	100.00	RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo]	[more]
KAG6595151.1	3.05e-117	97.67	putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022963187.1	1.24e-116	97.09	RING-H2 finger protein ATL70-like [Cucurbita moschata] >KAG7027167.1 putative RI...	[more]
XP_023544988.1	2.41e-91	80.12	RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo]	[more]
XP_022977896.1	3.43e-91	80.12	RING-H2 finger protein ATL70-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG19g04800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEI7	6.01e-117	97.09	RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111463471 ...	[more]
A0A6J1IL86	1.66e-91	80.12	RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111478050 PE...	[more]
A0A6J1EJP9	4.75e-91	79.53	RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111433226 ...	[more]
A0A5A7SKL1	2.00e-90	81.87	RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3CHE9	2.00e-90	81.87	RING-H2 finger protein ATL70-like OS=Cucumis melo OX=3656 GN=LOC103500941 PE=4 S...	[more]

BLAST of Cp4.1LG19g04800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35910.1	9.6e-47	57.49	RING/U-box superfamily protein	[more]
AT5G06490.1	4.0e-45	52.75	RING/U-box superfamily protein	[more]
AT2G46160.1	1.4e-29	40.12	RING/U-box superfamily protein	[more]
AT3G61550.1	2.9e-27	37.99	RING/U-box superfamily protein	[more]
AT5G07040.1	8.4e-27	38.56	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 110..151 e-value: 2.6E-7 score: 40.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 110..152 e-value: 1.3E-12 score: 47.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 110..152 score: 12.813844
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 71..156 e-value: 7.8E-22 score: 78.7
None	No IPR available	PANTHER	PTHR46719:SF2	RING-H2 FINGER PROTEIN ATL70-LIKE	coord: 5..171
None	No IPR available	PANTHER	PTHR46719	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 5..171
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 109..152 e-value: 1.33517E-19 score: 75.4161
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 86..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g04800.1	Cp4.1LG19g04800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane