Cp4.1LG19g04590 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG19g04590
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionTransducin/WD40 repeat-like superfamily protein, putative
LocationCp4.1LG19: 3274939 .. 3276149 (+)
RNA-Seq ExpressionCp4.1LG19g04590
SyntenyCp4.1LG19g04590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGACGAAGTATACACTGATTCTTGTTGCAGCAGCGAGGTATTGTAAGAGTAGAAAAGAGAGTATCCATTAAAATTTTGTTATAAATCAATATTTAAAAAATATATAAAAAGGTGAGGAAAAATTGTCCATAGAGAATCCATAAATCTGTCCAATCTTGAACACTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGTAAAAGTGAGGATTAAAAATTTCGTAACAAAAATAAACAAATATTATTTTAATAGTTTGAAAATAAAAATGAAAATTTTAAGTCTATTTTTGAGATATCAATTATCATTTTAGATTTAAACTTTTTACTTAAAAAAAAAAAAAATTGATTTAGTTACTTTAATTTTTAATTTTAATTTTTATTATTTCGTTGCATCTGATCGCTTGAAGAACAAGCAATTAGTTAGTGCTTTCAAAACAAAAGGAACAGTGAGATAAATTTTGGCGGGAAGGAAAAATGGAGGTCGGCGGAGGAGGAGATGGAGGTTTTAGTCCTCGCGCAACCGTTGAAGACATACAGAGACGGCTGCTTCGACCGTCGTCGATTCACTCTCCACCTCCGACGCCGTCAATCTCGATATTCTACTTATTTCTCCATTAATTTCACTAGTAATGTTTTTTAATCTCCTTGAGACCTGAACTTCTAGAATTTCTCATGTTTATTTCCAGGTTTTCTCGCGGCAAAGATGTTCAAGGTCGAAATTCATCGCAGTTCGAGGCGAATGCCATGGGGCTTTATCGTAAACGAGAAGCAAAAGAAGGAGAAACTGCGAGTAGGAAGAGGAAACTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCGGTTTCTTCGAAGATCAGTCGAGCGCAGAAGGTTCCTAAGATGACGGTAAAGAGAGAGGTTAGGGATTTTGAGTGGCCCGTCGCTGAATTGAGGATGTTGATGGATGATTCGACGGTCGGAAAGGGGAAAATTAATACTGTTAATCTCGGTAATGACTCTGATAATCTCACAGAAAATGATGAAGAAGGAGATGTTAAATTCTCTACTCCGTTTCAAAAATTTGAGCAGACTGCGTTGGTACTGTTCGAATTATGA

mRNA sequence

ATGTGGACGAAGTATACACTGATTCTTGTTGCAGCAGCGAGGTTTTCTCGCGGCAAAGATGTTCAAGGTCGAAATTCATCGCAGTTCGAGGCGAATGCCATGGGGCTTTATCGTAAACGAGAAGCAAAAGAAGGAGAAACTGCGAGTAGGAAGAGGAAACTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCGGTTTCTTCGAAGATCAGTCGAGCGCAGAAGGTTCCTAAGATGACGGTAAAGAGAGAGGTTAGGGATTTTGAGTGGCCCGTCGCTGAATTGAGGATGTTGATGGATGATTCGACGGTCGGAAAGGGGAAAATTAATACTGTTAATCTCGGTAATGACTCTGATAATCTCACAGAAAATGATGAAGAAGGAGATGTTAAATTCTCTACTCCGTTTCAAAAATTTGAGCAGACTGCGTTGGTACTGTTCGAATTATGA

Coding sequence (CDS)

ATGTGGACGAAGTATACACTGATTCTTGTTGCAGCAGCGAGGTTTTCTCGCGGCAAAGATGTTCAAGGTCGAAATTCATCGCAGTTCGAGGCGAATGCCATGGGGCTTTATCGTAAACGAGAAGCAAAAGAAGGAGAAACTGCGAGTAGGAAGAGGAAACTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCGGTTTCTTCGAAGATCAGTCGAGCGCAGAAGGTTCCTAAGATGACGGTAAAGAGAGAGGTTAGGGATTTTGAGTGGCCCGTCGCTGAATTGAGGATGTTGATGGATGATTCGACGGTCGGAAAGGGGAAAATTAATACTGTTAATCTCGGTAATGACTCTGATAATCTCACAGAAAATGATGAAGAAGGAGATGTTAAATTCTCTACTCCGTTTCAAAAATTTGAGCAGACTGCGTTGGTACTGTTCGAATTATGA

Protein sequence

MWTKYTLILVAAARFSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQKVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENDEEGDVKFSTPFQKFEQTALVLFEL
Homology
[Close]
BLAST of Cp4.1LG19g04590 vs. NCBI nr
Match: KAG6595318.1 (hypothetical protein SDJN03_11871, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275 bits (702), Expect = 1.71e-88
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 0 

Query: 1   MWTKYTLILVAAARFSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDP 60
           MWTKYTLILVAAARFSRGKDVQGRNSSQFEANAMGLYRK+EAKEGETA RKRKLEDYLDP
Sbjct: 78  MWTKYTLILVAAARFSRGKDVQGRNSSQFEANAMGLYRKQEAKEGETARRKRKLEDYLDP 137

Query: 61  VLLSAVSSKISRAQKVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDN 120
           VLLSAVSSKISRAQKVPKM VKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDN
Sbjct: 138 VLLSAVSSKISRAQKVPKMKVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDN 197

Query: 121 LTENDEEGDVKFSTPFQKFEQTALV 145
           LTENDEEGDVKFSTPFQKFEQTAL+
Sbjct: 198 LTENDEEGDVKFSTPFQKFEQTALL 222

[Close]
BLAST of Cp4.1LG19g04590 vs. NCBI nr
Match: XP_023518840.1 (uncharacterized protein LOC111782239 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261 bits (667), Expect = 6.59e-87
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 15  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ 74
           FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ
Sbjct: 38  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ 97

Query: 75  KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENDEEGDVKFST 134
           KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENDEEGDVKFST
Sbjct: 98  KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENDEEGDVKFST 157

Query: 135 PFQKFEQTALVLFEL 149
           PFQKFEQTALVLFEL
Sbjct: 158 PFQKFEQTALVLFEL 172

[Close]
BLAST of Cp4.1LG19g04590 vs. NCBI nr
Match: XP_022972790.1 (uncharacterized protein LOC111471294 isoform X1 [Cucurbita maxima])

HSP 1 Score: 254 bits (648), Expect = 5.18e-84
Identity = 132/135 (97.78%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 15  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ 74
           FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ
Sbjct: 38  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ 97

Query: 75  KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENDEEGDVKFST 134
           KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGK NTVNLGNDSD LTENDEEGDVK ST
Sbjct: 98  KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKTNTVNLGNDSDYLTENDEEGDVKIST 157

Query: 135 PFQKFEQTALVLFEL 149
           PFQKFEQTALVLFEL
Sbjct: 158 PFQKFEQTALVLFEL 172

[Close]
BLAST of Cp4.1LG19g04590 vs. NCBI nr
Match: XP_022962693.1 (uncharacterized protein LOC111463108 [Cucurbita moschata])

HSP 1 Score: 253 bits (647), Expect = 7.36e-84
Identity = 131/135 (97.04%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 15  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ 74
           FSRGKDVQGRNSSQFEANAMGLYRK+EAKEGETA RKRKLEDYLDPVLLSAVSSKISRAQ
Sbjct: 38  FSRGKDVQGRNSSQFEANAMGLYRKQEAKEGETARRKRKLEDYLDPVLLSAVSSKISRAQ 97

Query: 75  KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENDEEGDVKFST 134
           KVPKM VKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTEN+EEGDVKFST
Sbjct: 98  KVPKMKVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENNEEGDVKFST 157

Query: 135 PFQKFEQTALVLFEL 149
           PFQKFEQTALVLFEL
Sbjct: 158 PFQKFEQTALVLFEL 172

[Close]
BLAST of Cp4.1LG19g04590 vs. NCBI nr
Match: KAG7027328.1 (hypothetical protein SDJN02_11340, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244 bits (624), Expect = 2.77e-77
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 15  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ 74
           FSRGKDVQGRNSSQFEANAMGLYRK+EAKEGETA RKRKLEDYLDPVLLSAVSSKISRAQ
Sbjct: 38  FSRGKDVQGRNSSQFEANAMGLYRKQEAKEGETARRKRKLEDYLDPVLLSAVSSKISRAQ 97

Query: 75  KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENDEEGDVKFST 134
           KVPKM VKREVRDFEWPVAELRMLMDDSTVGKGKIN VNLGNDSDNLTENDEEGDVKFST
Sbjct: 98  KVPKMKVKREVRDFEWPVAELRMLMDDSTVGKGKINIVNLGNDSDNLTENDEEGDVKFST 157

Query: 135 PFQKFEQTAL 144
           PFQKFEQTAL
Sbjct: 158 PFQKFEQTAL 167

[Close]
BLAST of Cp4.1LG19g04590 vs. ExPASy TrEMBL
Match: A0A6J1I9M7 (uncharacterized protein LOC111471294 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471294 PE=4 SV=1)

HSP 1 Score: 254 bits (648), Expect = 2.51e-84
Identity = 132/135 (97.78%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 15  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ 74
           FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ
Sbjct: 38  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ 97

Query: 75  KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENDEEGDVKFST 134
           KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGK NTVNLGNDSD LTENDEEGDVK ST
Sbjct: 98  KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKTNTVNLGNDSDYLTENDEEGDVKIST 157

Query: 135 PFQKFEQTALVLFEL 149
           PFQKFEQTALVLFEL
Sbjct: 158 PFQKFEQTALVLFEL 172

[Close]
BLAST of Cp4.1LG19g04590 vs. ExPASy TrEMBL
Match: A0A6J1HFI5 (uncharacterized protein LOC111463108 OS=Cucurbita moschata OX=3662 GN=LOC111463108 PE=4 SV=1)

HSP 1 Score: 253 bits (647), Expect = 3.56e-84
Identity = 131/135 (97.04%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 15  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ 74
           FSRGKDVQGRNSSQFEANAMGLYRK+EAKEGETA RKRKLEDYLDPVLLSAVSSKISRAQ
Sbjct: 38  FSRGKDVQGRNSSQFEANAMGLYRKQEAKEGETARRKRKLEDYLDPVLLSAVSSKISRAQ 97

Query: 75  KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENDEEGDVKFST 134
           KVPKM VKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTEN+EEGDVKFST
Sbjct: 98  KVPKMKVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENNEEGDVKFST 157

Query: 135 PFQKFEQTALVLFEL 149
           PFQKFEQTALVLFEL
Sbjct: 158 PFQKFEQTALVLFEL 172

[Close]
BLAST of Cp4.1LG19g04590 vs. ExPASy TrEMBL
Match: A0A6J1I6X7 (uncharacterized protein LOC111471294 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471294 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 5.92e-61
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0 

Query: 15  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ 74
           FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ
Sbjct: 38  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ 97

Query: 75  KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLG 115
           KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGK NTVNLG
Sbjct: 98  KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKTNTVNLG 138

[Close]
BLAST of Cp4.1LG19g04590 vs. ExPASy TrEMBL
Match: A0A0A0L270 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295500 PE=4 SV=1)

HSP 1 Score: 188 bits (477), Expect = 1.56e-57
Identity = 97/130 (74.62%), Postives = 111/130 (85.38%), Query Frame = 0 

Query: 15  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQ 74
           FS GK+ Q RNSSQFEAN M L   REAK+GET+S++RKLEDYLDPVLLSA+SSKISR +
Sbjct: 39  FSLGKNAQDRNSSQFEANYMRLSWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLE 98

Query: 75  KVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENDEEGDVKFST 134
           K+PK+TVKR+VRDFEW V ELRM  +D+ VGK KI+ VNLGNDSDNL END +GDVKFST
Sbjct: 99  KIPKITVKRKVRDFEWDVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFST 158

Query: 135 PFQKFEQTAL 144
           PFQKFEQ AL
Sbjct: 159 PFQKFEQNAL 168

[Close]
BLAST of Cp4.1LG19g04590 vs. ExPASy TrEMBL
Match: A0A5A7STW4 (Putative Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00230 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 2.89e-56
Identity = 97/136 (71.32%), Postives = 112/136 (82.35%), Query Frame = 0 

Query: 14  RFSRGKDVQGRNSSQFEANAMGLYRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRA 73
           +FS GK+ Q RNSSQFEAN M L R R     E +S++RKLEDYLDPVLLSA+SSKI+R 
Sbjct: 46  QFSLGKNAQDRNSSQFEANYMRLSRSR-----EISSKERKLEDYLDPVLLSAISSKINRF 105

Query: 74  QKVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENDEEGDVKFS 133
           +K+P++TVKREVRDFEW V ELRM  +D+ VGK KI+ VNLGNDSDNL END +GDVKFS
Sbjct: 106 EKIPRITVKREVRDFEWHVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFS 165

Query: 134 TPFQKFEQTALVLFEL 149
           TPFQKFEQ ALVLFEL
Sbjct: 166 TPFQKFEQNALVLFEL 176

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g04590 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG19g04590 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595318.11.71e-8897.24hypothetical protein SDJN03_11871, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023518840.16.59e-87100.00uncharacterized protein LOC111782239 [Cucurbita pepo subsp. pepo][more]
XP_022972790.15.18e-8497.78uncharacterized protein LOC111471294 isoform X1 [Cucurbita maxima][more]
XP_022962693.17.36e-8497.04uncharacterized protein LOC111463108 [Cucurbita moschata][more]
KAG7027328.12.77e-7796.92hypothetical protein SDJN02_11340, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cp4.1LG19g04590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I9M72.51e-8497.78uncharacterized protein LOC111471294 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HFI53.56e-8497.04uncharacterized protein LOC111463108 OS=Cucurbita moschata OX=3662 GN=LOC1114631... [more]
A0A6J1I6X75.92e-6199.01uncharacterized protein LOC111471294 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A0A0L2701.56e-5774.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295500 PE=4 SV=1[more]
A0A5A7STW42.89e-5671.32Putative Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. ma... [more]
BLAST of Cp4.1LG19g04590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g04590.1Cp4.1LG19g04590.1mRNA