Cp4.1LG19g03230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG19g03230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG19: 2774318 .. 2774593 (+)
RNA-Seq ExpressionCp4.1LG19g03230
SyntenyCp4.1LG19g03230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTGAGGGATTGGAAGTGGGCGTTGGTTGGGTTGGTTCTGGTGGGCGATTGCTTTACCAATGGAGTGGTGGTGGAAGGCAGTAGTAGGCGGTTCTGGATGTTCCCAATGAAGCCTCAGAAAGGGGGTTTTGAGTCATATGATTCAAACATGATTGCCACCTTGGGTATTGAATGCAAGTGTTGTGATGATGAGATTGGAGGTAAATGCAGTACTCACTTCGCCGCTGCTTCTTGCTCTCATCTCCGTTGTTCTCCTTGGAAACACTATTAG

mRNA sequence

ATGGATTTGAGGGATTGGAAGTGGGCGTTGGTTGGGTTGGTTCTGGTGGGCGATTGCTTTACCAATGGAGTGGTGGTGGAAGGCAGTAGTAGGCGGTTCTGGATGTTCCCAATGAAGCCTCAGAAAGGGGGTTTTGAGTCATATGATTCAAACATGATTGCCACCTTGGGTATTGAATGCAAGTGTTGTGATGATGAGATTGGAGGTAAATGCAGTACTCACTTCGCCGCTGCTTCTTGCTCTCATCTCCGTTGTTCTCCTTGGAAACACTATTAG

Coding sequence (CDS)

ATGGATTTGAGGGATTGGAAGTGGGCGTTGGTTGGGTTGGTTCTGGTGGGCGATTGCTTTACCAATGGAGTGGTGGTGGAAGGCAGTAGTAGGCGGTTCTGGATGTTCCCAATGAAGCCTCAGAAAGGGGGTTTTGAGTCATATGATTCAAACATGATTGCCACCTTGGGTATTGAATGCAAGTGTTGTGATGATGAGATTGGAGGTAAATGCAGTACTCACTTCGCCGCTGCTTCTTGCTCTCATCTCCGTTGTTCTCCTTGGAAACACTATTAG

Protein sequence

MDLRDWKWALVGLVLVGDCFTNGVVVEGSSRRFWMFPMKPQKGGFESYDSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKHY
Homology
BLAST of Cp4.1LG19g03230 vs. NCBI nr
Match: KAG6595355.1 (hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183 bits (465), Expect = 3.17e-58
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 0

Query: 1  MDLRDWKWALVGLVLVGDCFTNGVVVEGSSRRFWMFPMKPQKGGFESYDSNMIATLGIEC 60
          MDLR+WKWALVGLVLVG CF+NGVVVEGSSRR WM P+K  KGGFE+YDSNMIATLGIEC
Sbjct: 6  MDLREWKWALVGLVLVGACFSNGVVVEGSSRRSWMLPVKLHKGGFEAYDSNMIATLGIEC 65

Query: 61 KCCDDEIGGKCSTHFAAASCSHLRCSPWKHY 91
          KCCDDEIGGKCSTHFAAASCS+LRCSPWKHY
Sbjct: 66 KCCDDEIGGKCSTHFAAASCSNLRCSPWKHY 96

BLAST of Cp4.1LG19g03230 vs. NCBI nr
Match: KAE8649554.1 (hypothetical protein Csa_018195 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.67e-11
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 1  MDLRDWKWALVGLVLVGDCFTNGV-VVEGSSRRFWMFP-MKPQKGGFESYDSNMIATLGI 60
          M   ++K   +G +L    F NGV VVEGSSR F + P +K QKG    YDS + AT+GI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 61 ECKCCDDEIGGK 70
          ECKCCD EIGGK
Sbjct: 61 ECKCCD-EIGGK 71

BLAST of Cp4.1LG19g03230 vs. NCBI nr
Match: KCW65605.1 (hypothetical protein EUGRSUZ_G02995 [Eucalyptus grandis])

HSP 1 Score: 62.0 bits (149), Expect = 2.65e-10
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 0

Query: 49 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKH 90
          DSNM ATLG++CKCCD + GG+C + +A  SCS LRC PWK+
Sbjct: 37 DSNMYATLGVQCKCCDGK-GGECRSEWAEGSCSKLRCLPWKY 77

BLAST of Cp4.1LG19g03230 vs. NCBI nr
Match: KAF8022120.1 (hypothetical protein BT93_G2305 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 59.7 bits (143), Expect = 2.15e-09
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 49 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKH 90
          DSNM ATLG+ CKCCD E  G+C + +A  SCS LRC PWK+
Sbjct: 37 DSNMYATLGVHCKCCDGE-RGECRSEWAEGSCSKLRCLPWKY 77

BLAST of Cp4.1LG19g03230 vs. NCBI nr
Match: KCW65607.1 (hypothetical protein EUGRSUZ_G02997 [Eucalyptus grandis])

HSP 1 Score: 58.5 bits (140), Expect = 6.12e-09
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 49 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKH 90
          DS+M ATLG++CKCCD E  G+C + +A  SCS LRC PWK+
Sbjct: 37 DSSMYATLGVQCKCCDGE-RGECRSEWAEGSCSKLRCLPWKY 77

BLAST of Cp4.1LG19g03230 vs. ExPASy TrEMBL
Match: A0A0A0KXD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303090 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.21e-23
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 0

Query: 1  MDLRDWKWALVGLVLVGDCFTNGV-VVEGSSRRFWMFP-MKPQKGGFESYDSNMIATLGI 60
          M   ++K   +G +L    F NGV VVEGSSR F + P +K QKG    YDS + AT+GI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 61 ECKCCDDEIGGKCSTHFAAASCSHLRCSPWKHY 91
          ECKCCD EIGGKCST F   SCS+L CSPWK Y
Sbjct: 61 ECKCCD-EIGGKCSTEFTT-SCSNLHCSPWKQY 91

BLAST of Cp4.1LG19g03230 vs. ExPASy TrEMBL
Match: A0A059BIU0 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02995 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.29e-10
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 0

Query: 49 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKH 90
          DSNM ATLG++CKCCD + GG+C + +A  SCS LRC PWK+
Sbjct: 37 DSNMYATLGVQCKCCDGK-GGECRSEWAEGSCSKLRCLPWKY 77

BLAST of Cp4.1LG19g03230 vs. ExPASy TrEMBL
Match: A0A059BH96 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02997 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.96e-09
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 49 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKH 90
          DS+M ATLG++CKCCD E  G+C + +A  SCS LRC PWK+
Sbjct: 37 DSSMYATLGVQCKCCDGE-RGECRSEWAEGSCSKLRCLPWKY 77

BLAST of Cp4.1LG19g03230 vs. ExPASy TrEMBL
Match: A0A1S2XQG0 (uncharacterized protein LOC101514220 OS=Cicer arietinum OX=3827 GN=LOC101514220 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.10e-06
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 0

Query: 50 SNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWK 89
          SN++ATLG+ CKCCD  IGG C++ +   SC++L+CSPWK
Sbjct: 40 SNILATLGVVCKCCDG-IGGTCTSTWKK-SCNNLKCSPWK 77

BLAST of Cp4.1LG19g03230 vs. ExPASy TrEMBL
Match: A0A0B2SRB0 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_006373 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.78e-06
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 0

Query: 50 SNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWK 89
          S + ATLGI CKCCD   GG C++ +   SCS+L+CSPWK
Sbjct: 44 SKIFATLGIVCKCCDGVEGGACTSTWTE-SCSNLQCSPWK 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6595355.13.17e-5889.01hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8649554.11.67e-1154.17hypothetical protein Csa_018195 [Cucumis sativus][more]
KCW65605.12.65e-1061.90hypothetical protein EUGRSUZ_G02995 [Eucalyptus grandis][more]
KAF8022120.12.15e-0961.90hypothetical protein BT93_G2305 [Corymbia citriodora subsp. variegata][more]
KCW65607.16.12e-0959.52hypothetical protein EUGRSUZ_G02997 [Eucalyptus grandis][more]
Match NameE-valueIdentityDescription
A0A0A0KXD16.21e-2356.99Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303090 PE=4 SV=1[more]
A0A059BIU01.29e-1061.90Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02995 PE=4 SV... [more]
A0A059BH962.96e-0959.52Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02997 PE=4 SV... [more]
A0A1S2XQG01.10e-0657.50uncharacterized protein LOC101514220 OS=Cicer arietinum OX=3827 GN=LOC101514220 ... [more]
A0A0B2SRB01.78e-0657.50Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_006373 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g03230.1Cp4.1LG19g03230.1mRNA