Cp4.1LG19g02620 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g02620
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	kinetochore protein SPC24 homolog
Location	Cp4.1LG19: 2222942 .. 2223642 (+)
RNA-Seq Expression	Cp4.1LG19g02620
Synteny	Cp4.1LG19g02620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGAATCTTAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTAATGAATAAAAACACAATCTCAAATGAAATTAATGAAGTTCCTGGAAAAAAACAAAATGAGAGGTAGATTTTAAATTTGTATCATCACATCACTCTTCTCTCCAATCTCGTTGTTGGTTCGTTGTTGATTTAGAGGAATATGGGGGATTTCTCCGGAAAGATGAACATCGAGGACCTCTTATCTTATGGCGACGATCTGGTGGCTTTATTGAAGGACCAAAACGACGTTCAAACCTTGAATCAATGTCTCCAACAGTTCAACGCCCTTCAATCTTCTTGTCACGATGATTCCCGTAATGTTCACAGCTCAGTTCAAGGTCTATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGAAAAATAGGTTAAATTCGTAATCGTTTCGCGGTTAGTGATTTTGGGTTTTTTTTTTGGGGTGAACGAATTGTGAGAGTTGGTTCCGTATAATTTGTTTAACGAGTTGTTAATTGATTCAGATTATGAGAAGAAAATCGAGGAATGCCGGGTGAAAACAGAGGAGGCGAAAGCGAGAACTGTTGCAGACGATGAAATGGATATTCTTGAAAAGGAGATCGAAGAGGAAGTTAGGGAAGAACATTTGCTCATGGAGGAGATTAGATGA

mRNA sequence

ATTTGAATCTTAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTAATGAATAAAAACACAATCTCAAATGAAATTAATGAAGTTCCTGGAAAAAAACAAAATGAGAGGTAGATTTTAAATTTGTATCATCACATCACTCTTCTCTCCAATCTCGTTGTTGGTTCGTTGTTGATTTAGAGGAATATGGGGGATTTCTCCGGAAAGATGAACATCGAGGACCTCTTATCTTATGGCGACGATCTGGTGGCTTTATTGAAGGACCAAAACGACGTTCAAACCTTGAATCAATGTCTCCAACAGTTCAACGCCCTTCAATCTTCTTGTCACGATGATTCCCGTAATGTTCACAGCTCAGTTCAAGATTATGAGAAGAAAATCGAGGAATGCCGGGTGAAAACAGAGGAGGCGAAAGCGAGAACTGTTGCAGACGATGAAATGGATATTCTTGAAAAGGAGATCGAAGAGGAAGTTAGGGAAGAACATTTGCTCATGGAGGAGATTAGATGA

Coding sequence (CDS)

ATGGGGGATTTCTCCGGAAAGATGAACATCGAGGACCTCTTATCTTATGGCGACGATCTGGTGGCTTTATTGAAGGACCAAAACGACGTTCAAACCTTGAATCAATGTCTCCAACAGTTCAACGCCCTTCAATCTTCTTGTCACGATGATTCCCGTAATGTTCACAGCTCAGTTCAAGATTATGAGAAGAAAATCGAGGAATGCCGGGTGAAAACAGAGGAGGCGAAAGCGAGAACTGTTGCAGACGATGAAATGGATATTCTTGAAAAGGAGATCGAAGAGGAAGTTAGGGAAGAACATTTGCTCATGGAGGAGATTAGATGA

Protein sequence

MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR

Homology

[Close]

BLAST of Cp4.1LG19g02620 vs. ExPASy Swiss-Prot
Match: Q67XT3 (Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-16
Identity = 45/107 (42.06%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60
           MG+ S   +IEDL+SYGDDL+ LL  +N    ++Q  +QF AL  +CH+D   +  S++D
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 108
            + K+  C+ KTEEA +   A+DE++ L+KE++EE+  E  L +E+R
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELR 107

[Close]

BLAST of Cp4.1LG19g02620 vs. NCBI nr
Match: XP_023518318.1 (uncharacterized protein LOC111781837 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202 bits (514), Expect = 6.14e-64
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60
           MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD
Sbjct: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107
           YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107

[Close]

BLAST of Cp4.1LG19g02620 vs. NCBI nr
Match: XP_022931907.1 (uncharacterized protein LOC111438184 [Cucurbita moschata] >XP_022931908.1 uncharacterized protein LOC111438184 [Cucurbita moschata])

HSP 1 Score: 196 bits (499), Expect = 1.17e-61
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60
           MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQ FNALQSS HDDSRNVHSSVQD
Sbjct: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107
           YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107

[Close]

BLAST of Cp4.1LG19g02620 vs. NCBI nr
Match: XP_022966574.1 (uncharacterized protein LOC111466216 [Cucurbita maxima])

HSP 1 Score: 181 bits (458), Expect = 1.94e-55
Identity = 97/107 (90.65%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60
           MGDFSGKMNIE+LLSYG+DLV LLKDQNDVQTLNQCLQ FNALQSSCHDD  NVH  VQD
Sbjct: 1   MGDFSGKMNIEELLSYGNDLVVLLKDQNDVQTLNQCLQHFNALQSSCHDDFSNVHL-VQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107
           YEKKIEECRVKTEEAKARTVADDEMDILEKE+EEE+REEHLLMEEIR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEVEEELREEHLLMEEIR 106

[Close]

BLAST of Cp4.1LG19g02620 vs. NCBI nr
Match: KAG7027420.1 (hypothetical protein SDJN02_11433, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179 bits (454), Expect = 4.78e-55
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60
          MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQ FNALQSS HDDSRNVHSSVQD
Sbjct: 1  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60

Query: 61 YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVRE 98
          YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE+ E
Sbjct: 61 YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINE 98

[Close]

BLAST of Cp4.1LG19g02620 vs. NCBI nr
Match: KAG6595410.1 (Kinetochore protein SPC24-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179 bits (454), Expect = 4.78e-55
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60
          MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQ FNALQSS HDDSRNVHSSVQD
Sbjct: 1  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60

Query: 61 YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVRE 98
          YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE+ E
Sbjct: 61 YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINE 98

[Close]

BLAST of Cp4.1LG19g02620 vs. ExPASy TrEMBL
Match: A0A6J1F034 (uncharacterized protein LOC111438184 OS=Cucurbita moschata OX=3662 GN=LOC111438184 PE=4 SV=1)

HSP 1 Score: 196 bits (499), Expect = 5.69e-62
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60
           MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQ FNALQSS HDDSRNVHSSVQD
Sbjct: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107
           YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107

[Close]

BLAST of Cp4.1LG19g02620 vs. ExPASy TrEMBL
Match: A0A6J1HU69 (uncharacterized protein LOC111466216 OS=Cucurbita maxima OX=3661 GN=LOC111466216 PE=4 SV=1)

HSP 1 Score: 181 bits (458), Expect = 9.42e-56
Identity = 97/107 (90.65%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60
           MGDFSGKMNIE+LLSYG+DLV LLKDQNDVQTLNQCLQ FNALQSSCHDD  NVH  VQD
Sbjct: 1   MGDFSGKMNIEELLSYGNDLVVLLKDQNDVQTLNQCLQHFNALQSSCHDDFSNVHL-VQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107
           YEKKIEECRVKTEEAKARTVADDEMDILEKE+EEE+REEHLLMEEIR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEVEEELREEHLLMEEIR 106

[Close]

BLAST of Cp4.1LG19g02620 vs. ExPASy TrEMBL
Match: A0A6J1CR83 (uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013852 PE=4 SV=1)

HSP 1 Score: 163 bits (413), Expect = 6.62e-49
Identity = 87/107 (81.31%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60
           MGDFSGK+NIE+LLSYG+DLVALLKDQ DVQTLNQCL+   ALQS C DD  NVHSSVQD
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107
           YEKKIE CR KTEEAKARTVAD EMD+LE+E+EEE+R+EHLLMEEIR
Sbjct: 61  YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 107

[Close]

BLAST of Cp4.1LG19g02620 vs. ExPASy TrEMBL
Match: A0A6J1IPN8 (uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 2.35e-44
Identity = 82/107 (76.64%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60
           M DF+GK NIE++LSYGDDLVALL DQNDVQTLNQCL+ F  LQSSC DD  NV SSVQD
Sbjct: 1   MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107
           YEKKIE CR KTEEAKA TVADDE+DILEKE+ EE+ + +LLMEEIR
Sbjct: 61  YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIR 107

[Close]

BLAST of Cp4.1LG19g02620 vs. ExPASy TrEMBL
Match: A0A6J1CQL9 (uncharacterized protein LOC111013852 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013852 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 2.41e-43
Identity = 82/107 (76.64%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60
           MGDFSGK+NIE+LLSYG+DLVALLKDQ DVQTLNQCL+   ALQS C DD  NVH+    
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHN---- 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107
           YEKKIE CR KTEEAKARTVAD EMD+LE+E+EEE+R+EHLLMEEIR
Sbjct: 61  YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 103

[Close]

BLAST of Cp4.1LG19g02620 vs. TAIR 10
Match: AT3G08880.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-17
Identity = 45/107 (42.06%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60
           MG+ S   +IEDL+SYGDDL+ LL  +N    ++Q  +QF AL  +CH+D   +  S++D
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 108
            + K+  C+ KTEEA +   A+DE++ L+KE++EE+  E  L +E+R
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELR 107

[Close]

BLAST of Cp4.1LG19g02620 vs. TAIR 10
Match: AT5G01570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-13
Identity = 38/99 (38.38%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 9   NIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQDYEKKIEEC 68
           N E ++S+GD+L+ +L D+     L Q L+Q  A+  SC +D + +H S+QD +KK++ C
Sbjct: 7   NFEMVISWGDELIHVLDDRKGFDVLVQTLEQLRAIPFSCDEDFKEIHESLQDLQKKLDVC 66

Query: 69  RVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 108
           + KT+EA +    ++E++ L+KE++EE+  E  L EE+R
Sbjct: 67  KEKTDEANSEIADEEEIERLQKELDEELELECKLKEELR 105

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g02620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67XT3	3.1e-16	42.06	Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 ...	[more]

BLAST of Cp4.1LG19g02620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518318.1	6.14e-64	100.00	uncharacterized protein LOC111781837 [Cucurbita pepo subsp. pepo]	[more]
XP_022931907.1	1.17e-61	98.13	uncharacterized protein LOC111438184 [Cucurbita moschata] >XP_022931908.1 unchar...	[more]
XP_022966574.1	1.94e-55	90.65	uncharacterized protein LOC111466216 [Cucurbita maxima]	[more]
KAG7027420.1	4.78e-55	95.92	hypothetical protein SDJN02_11433, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6595410.1	4.78e-55	95.92	Kinetochore protein SPC24-like protein, partial [Cucurbita argyrosperma subsp. s...	[more]

BLAST of Cp4.1LG19g02620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F034	5.69e-62	98.13	uncharacterized protein LOC111438184 OS=Cucurbita moschata OX=3662 GN=LOC1114381...	[more]
A0A6J1HU69	9.42e-56	90.65	uncharacterized protein LOC111466216 OS=Cucurbita maxima OX=3661 GN=LOC111466216...	[more]
A0A6J1CR83	6.62e-49	81.31	uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1IPN8	2.35e-44	76.64	uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320...	[more]
A0A6J1CQL9	2.41e-43	76.64	uncharacterized protein LOC111013852 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Cp4.1LG19g02620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08880.1	2.2e-17	42.06	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G01570.1	1.1e-13	38.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 58..105
None	No IPR available	PANTHER	PTHR35730:SF2	KINETOCHORE PROTEIN SPC24 HOMOLOG-RELATED	coord: 1..107
IPR044951	Kinetochore protein SPC24-like	PANTHER	PTHR35730	KINETOCHORE PROTEIN SPC24 HOMOLOG-RELATED	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g02620.1	Cp4.1LG19g02620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051983	regulation of chromosome segregation