Cp4.1LG19g02020 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g02020
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ethylene-responsive transcription factor RAP2-11-like
Location	Cp4.1LG19: 1616847 .. 1617191 (-)
RNA-Seq Expression	Cp4.1LG19g02020
Synteny	Cp4.1LG19g02020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAACTGTTTGGAAGAAACAGAGATGGGTTCTGATTTTTGTAGCGATTCATCTTGTTCTTCTGATTCTTCTCGATTGGGGGCTTCTTCTGGAGTTGGGTTTGTCGATGGGCTTTCGATGGTGCAAGAATCGATGAAGTTTCCGGTGAACGCGGCGGCGTTTCAAGCGGAAGGCGAACATTCAGAGGATTTGGAGCTATCAGCTTTTGAGAGGATGAAAGTTGAGAGGCAAATTTCTGCTTCTTTATATGCCATGAATGGAGTTCAGGAGTATATGGAGGCTGTTCATGAGGCCTCTGAGGCAATTTGGGATCTTCCACCACTCTGTTCTTTGTTCTGTTGA

mRNA sequence

ATGACGAACTGTTTGGAAGAAACAGAGATGGGTTCTGATTTTTGTAGCGATTCATCTTGTTCTTCTGATTCTTCTCGATTGGGGGCTTCTTCTGGAGTTGGGTTTGTCGATGGGCTTTCGATGGTGCAAGAATCGATGAAGTTTCCGGTGAACGCGGCGGCGTTTCAAGCGGAAGGCGAACATTCAGAGGATTTGGAGCTATCAGCTTTTGAGAGGATGAAAGTTGAGAGGCAAATTTCTGCTTCTTTATATGCCATGAATGGAGTTCAGGAGTATATGGAGGCTGTTCATGAGGCCTCTGAGGCAATTTGGGATCTTCCACCACTCTGTTCTTTGTTCTGTTGA

Coding sequence (CDS)

ATGACGAACTGTTTGGAAGAAACAGAGATGGGTTCTGATTTTTGTAGCGATTCATCTTGTTCTTCTGATTCTTCTCGATTGGGGGCTTCTTCTGGAGTTGGGTTTGTCGATGGGCTTTCGATGGTGCAAGAATCGATGAAGTTTCCGGTGAACGCGGCGGCGTTTCAAGCGGAAGGCGAACATTCAGAGGATTTGGAGCTATCAGCTTTTGAGAGGATGAAAGTTGAGAGGCAAATTTCTGCTTCTTTATATGCCATGAATGGAGTTCAGGAGTATATGGAGGCTGTTCATGAGGCCTCTGAGGCAATTTGGGATCTTCCACCACTCTGTTCTTTGTTCTGTTGA

Protein sequence

MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGVGFVDGLSMVQESMKFPVNAAAFQAEGEHSEDLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC

Homology

[Close]

BLAST of Cp4.1LG19g02020 vs. ExPASy Swiss-Prot
Match: A2Q5W1 (Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=ERN1 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-17
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 62  SEDLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 115
           +  LELS FERMKVERQISASLYA+NGV EYME V E++EA+WDLPPLCSLFC
Sbjct: 216 ASSLELSEFERMKVERQISASLYAINGVHEYMETVQESNEALWDLPPLCSLFC 268

[Close]

BLAST of Cp4.1LG19g02020 vs. ExPASy Swiss-Prot
Match: A0A1X9PY88 (Ethylene-responsive transcription factor ERN1 OS=Lotus japonicus OX=34305 GN=ERN1 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 65  LELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 115
           LELS FERMKVERQISASLYA+NGV EYME V +++E +WDLPPLCSLFC
Sbjct: 220 LELSEFERMKVERQISASLYAINGVHEYMETVQDSNETLWDLPPLCSLFC 269

[Close]

BLAST of Cp4.1LG19g02020 vs. ExPASy Swiss-Prot
Match: A9Y0K8 (Ethylene-responsive transcription factor ERN2 OS=Medicago truncatula OX=3880 GN=ERN2 PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-11
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 64  DLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLC 111
           D  +S FERMKVERQISASLYA+NGVQEYM+ V + +EA W+L PLC
Sbjct: 267 DKGVSEFERMKVERQISASLYAINGVQEYMKNVQDCNEAQWNLSPLC 313

[Close]

BLAST of Cp4.1LG19g02020 vs. ExPASy Swiss-Prot
Match: Q6J9S1 (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702 GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.5e-05
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 74  KVERQISASLYAMNGVQEYME------AVHEASEAIWDLPPLCSLFC 115
           ++ERQISASLYAMNG   Y +      A+ + ++ IWDLP L  LFC
Sbjct: 205 EIERQISASLYAMNGANSYYDNMNAEYAIFDPTDPIWDLPSLSQLFC 251

[Close]

BLAST of Cp4.1LG19g02020 vs. NCBI nr
Match: XP_023518070.1 (ethylene-responsive transcription factor RAP2-11-like [Cucurbita pepo subsp. pepo] >XP_023521910.1 ethylene-responsive transcription factor RAP2-11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221 bits (564), Expect = 1.34e-70
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGVGFVDGLSMVQESMKFPVNAAAFQAEGE 60
           MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGVGFVDGLSMVQESMKFPVNAAAFQAEGE
Sbjct: 147 MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGVGFVDGLSMVQESMKFPVNAAAFQAEGE 206

Query: 61  HSEDLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 114
           HSEDLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC
Sbjct: 207 HSEDLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 260

[Close]

BLAST of Cp4.1LG19g02020 vs. NCBI nr
Match: XP_022966432.1 (ethylene-responsive transcription factor RAP2-11-like [Cucurbita maxima])

HSP 1 Score: 213 bits (542), Expect = 3.52e-67
Identity = 110/114 (96.49%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGVGFVDGLSMVQESMKFPVNAAAFQAEGE 60
           MTNCLEETEMGSDFCSDSSCSSDSSRLGASSG GFVDGLSMVQESMKFPVNAAA QAE E
Sbjct: 153 MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGAGFVDGLSMVQESMKFPVNAAALQAESE 212

Query: 61  HSEDLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 114
           HSEDLEL AFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC
Sbjct: 213 HSEDLELLAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 266

[Close]

BLAST of Cp4.1LG19g02020 vs. NCBI nr
Match: XP_022925003.1 (ethylene-responsive transcription factor RAP2-11-like [Cucurbita moschata] >KAG6595498.1 Ethylene-responsive transcription factor ERN1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027484.1 Ethylene-responsive transcription factor RAP2-11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212 bits (539), Expect = 8.35e-67
Identity = 110/114 (96.49%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGVGFVDGLSMVQESMKFPVNAAAFQAEGE 60
           MTNCLEETEMGSDFCSDSSCSSDSSRLGASSG GFVDGLSMVQESMKFPVNAAA QAE E
Sbjct: 147 MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGGGFVDGLSMVQESMKFPVNAAALQAESE 206

Query: 61  HSEDLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 114
           HSEDLEL AFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC
Sbjct: 207 HSEDLELLAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 260

[Close]

BLAST of Cp4.1LG19g02020 vs. NCBI nr
Match: XP_038883288.1 (ethylene-responsive transcription factor ERN1-like [Benincasa hispida])

HSP 1 Score: 112 bits (280), Expect = 6.38e-28
Identity = 70/114 (61.40%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 1   MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGVGFVDGLSMVQESMKFPVNAAAFQAEGE 60
           MTNCLEE E+G  +C DSSCS        S G+G           +  P N  A      
Sbjct: 156 MTNCLEEREVG--YC-DSSCS-------VSCGLG-----------VPLPENVTA------ 215

Query: 61  HSEDLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 114
           +SE+LEL AFERMKVERQISASLYA+NGVQEYMEAVHEASE IWDLPPLCSLFC
Sbjct: 216 NSEELELCAFERMKVERQISASLYAINGVQEYMEAVHEASEPIWDLPPLCSLFC 242

[Close]

BLAST of Cp4.1LG19g02020 vs. NCBI nr
Match: XP_004149126.1 (ethylene-responsive transcription factor ERN1 [Cucumis sativus] >KAE8649371.1 hypothetical protein Csa_019129 [Cucumis sativus])

HSP 1 Score: 106 bits (264), Expect = 1.53e-25
Identity = 67/114 (58.77%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 1   MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGVGFVDGLSMVQESMKFPVNAAAFQAEGE 60
           MTNCLEE E+ S  C   SC S+S  LG S                    N         
Sbjct: 155 MTNCLEEREVSS--CD--SCCSESCELGVS-----------------LAENGTV------ 214

Query: 61  HSEDLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 114
            SE+LEL AFERMKVERQISASLYA+NGVQEYMEAVHEASE IWDLPPLCSLFC
Sbjct: 215 SSEELELCAFERMKVERQISASLYAINGVQEYMEAVHEASEPIWDLPPLCSLFC 241

[Close]

BLAST of Cp4.1LG19g02020 vs. ExPASy TrEMBL
Match: A0A6J1HMY7 (ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita maxima OX=3661 GN=LOC111466085 PE=4 SV=1)

HSP 1 Score: 213 bits (542), Expect = 1.70e-67
Identity = 110/114 (96.49%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGVGFVDGLSMVQESMKFPVNAAAFQAEGE 60
           MTNCLEETEMGSDFCSDSSCSSDSSRLGASSG GFVDGLSMVQESMKFPVNAAA QAE E
Sbjct: 153 MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGAGFVDGLSMVQESMKFPVNAAALQAESE 212

Query: 61  HSEDLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 114
           HSEDLEL AFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC
Sbjct: 213 HSEDLELLAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 266

[Close]

BLAST of Cp4.1LG19g02020 vs. ExPASy TrEMBL
Match: A0A6J1EE15 (ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita moschata OX=3662 GN=LOC111432381 PE=4 SV=1)

HSP 1 Score: 212 bits (539), Expect = 4.04e-67
Identity = 110/114 (96.49%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGVGFVDGLSMVQESMKFPVNAAAFQAEGE 60
           MTNCLEETEMGSDFCSDSSCSSDSSRLGASSG GFVDGLSMVQESMKFPVNAAA QAE E
Sbjct: 147 MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGGGFVDGLSMVQESMKFPVNAAALQAESE 206

Query: 61  HSEDLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 114
           HSEDLEL AFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC
Sbjct: 207 HSEDLELLAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 260

[Close]

BLAST of Cp4.1LG19g02020 vs. ExPASy TrEMBL
Match: A0A5A7UZM7 (Ethylene-responsive transcription factor RAP2-11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00240 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 2.12e-25
Identity = 66/114 (57.89%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 1   MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGVGFVDGLSMVQESMKFPVNAAAFQAEGE 60
           MTNCLEE E+ S  C   SC S+S  LG S                    N         
Sbjct: 156 MTNCLEEREVSS--CD--SCCSESCELGVS-----------------LAENGTV------ 215

Query: 61  HSEDLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 114
            SE+LEL AFERMKVERQISASLYA+NGVQEYMEAVHEA+E IWDLPPLCSLFC
Sbjct: 216 SSEELELCAFERMKVERQISASLYAINGVQEYMEAVHEANEPIWDLPPLCSLFC 242

[Close]

BLAST of Cp4.1LG19g02020 vs. ExPASy TrEMBL
Match: A0A1S3B5E8 (ethylene-responsive transcription factor RAP2-11-like OS=Cucumis melo OX=3656 GN=LOC103485987 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 2.12e-25
Identity = 66/114 (57.89%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 1   MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGVGFVDGLSMVQESMKFPVNAAAFQAEGE 60
           MTNCLEE E+ S  C   SC S+S  LG S                    N         
Sbjct: 156 MTNCLEEREVSS--CD--SCCSESCELGVS-----------------LAENGTV------ 215

Query: 61  HSEDLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCSLFC 114
            SE+LEL AFERMKVERQISASLYA+NGVQEYMEAVHEA+E IWDLPPLCSLFC
Sbjct: 216 SSEELELCAFERMKVERQISASLYAINGVQEYMEAVHEANEPIWDLPPLCSLFC 242

[Close]

BLAST of Cp4.1LG19g02020 vs. ExPASy TrEMBL
Match: A0A498IK82 (AP2/ERF domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_035104 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 5.79e-24
Identity = 64/123 (52.03%), Postives = 74/123 (60.16%), Query Frame = 0


Query: 1   MTNCLEETEMGSDFCSDSSCSSDSSRLGASSGVGFVDGLSMVQESMKFPVNAAAFQAEGE 60
           + NC EE E+ S F +     S S+ L   S    VD  S  Q++ +FP + AA      
Sbjct: 191 LRNCNEEFELSSSFNN-----SQSNLLSWGSYQTGVDHFSFAQQAFEFPKHEAAAALSSA 250

Query: 61  HSE---------DLELSAFERMKVERQISASLYAMNGVQEYMEAVHEASEAIWDLPPLCS 114
            S          D EL  FERMKVERQISASLYAMNGVQEYME VH+ SEA+WDLPPLCS
Sbjct: 251 ESTTTTSTAGEADSELMDFERMKVERQISASLYAMNGVQEYMETVHDPSEALWDLPPLCS 308

[Close]

BLAST of Cp4.1LG19g02020 vs. TAIR 10
Match: AT5G19790.1 (related to AP2 11 )

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 74  KVERQISASLYAMNGVQEYME------AVHEASEAIWDLPPLCSLFC 115
           ++ERQISASLYAMNG   Y +      A+ + ++ IWDLP L  LFC
Sbjct: 205 EIERQISASLYAMNGANSYYDNMNAEYAIFDPTDPIWDLPSLSQLFC 251

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g02020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2Q5W1	1.7e-17	79.25	Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=...	[more]
A0A1X9PY88	1.1e-16	80.00	Ethylene-responsive transcription factor ERN1 OS=Lotus japonicus OX=34305 GN=ERN...	[more]
A9Y0K8	5.4e-11	70.21	Ethylene-responsive transcription factor ERN2 OS=Medicago truncatula OX=3880 GN=...	[more]
Q6J9S1	1.5e-05	51.06	Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Cp4.1LG19g02020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518070.1	1.34e-70	100.00	ethylene-responsive transcription factor RAP2-11-like [Cucurbita pepo subsp. pep...	[more]
XP_022966432.1	3.52e-67	96.49	ethylene-responsive transcription factor RAP2-11-like [Cucurbita maxima]	[more]
XP_022925003.1	8.35e-67	96.49	ethylene-responsive transcription factor RAP2-11-like [Cucurbita moschata] >KAG6...	[more]
XP_038883288.1	6.38e-28	61.40	ethylene-responsive transcription factor ERN1-like [Benincasa hispida]	[more]
XP_004149126.1	1.53e-25	58.77	ethylene-responsive transcription factor ERN1 [Cucumis sativus] >KAE8649371.1 hy...	[more]

BLAST of Cp4.1LG19g02020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HMY7	1.70e-67	96.49	ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1EE15	4.04e-67	96.49	ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita moschata OX=3...	[more]
A0A5A7UZM7	2.12e-25	57.89	Ethylene-responsive transcription factor RAP2-11-like OS=Cucumis melo var. makuw...	[more]
A0A1S3B5E8	2.12e-25	57.89	ethylene-responsive transcription factor RAP2-11-like OS=Cucumis melo OX=3656 GN...	[more]
A0A498IK82	5.79e-24	52.03	AP2/ERF domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_035104 PE=...	[more]

BLAST of Cp4.1LG19g02020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19790.1	1.1e-06	51.06	related to AP2 11	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g02020.1	Cp4.1LG19g02020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity