Cp4.1LG19g01170 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG19g01170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionmajor pollen allergen Ole e 6-like
LocationCp4.1LG19: 970403 .. 971077 (-)
RNA-Seq ExpressionCp4.1LG19g01170
SyntenyCp4.1LG19g01170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATCATCCACACATTAAGAAACCAAGAAAGGAACAAAAAGGGGAGGAATTTTTCTTTTAAGGTAAAAAAATATTTTAAAAAATGGCGAAGAAGATGACGGCAGTGCTTCTAACGTGCGTTGTGTTGGTATCCGCATTGCAATTCTCCACTGCTGATAGCCCAGCTGAAATGGAGGCCAGATTCAAGTCGTTCTTCGGTGACTTGAGCGGCGTGGAGGCAAAATTTAAGTCGTGTGCTGCAACCTGCGAGAAGGAATGTGTGGCCAAAGGCGAGACCAGTGAATCATGCAAACCAAAGTGTGAGACAGATTGCGGCAAAAAGGAAGTTTCAGGTATATCTTTTTTTTGTCTCTTAAGAAAACGGTAAAATAATTTTTCTCNCTCTTAAGAGAACGGTAAAATAATTTTTCTCAAAAATTTTACACTTTGTGTATTAATGTTAATTTTTGTTGTGCTTATTTTGCAGAGAAGTTTAACATCCATCTAACCTGATGAGATGGAAAGGGAAGGAAGAGCTCAGCATAGTGATCGATTTGGTTTAGAACATCGTTATAATTTATTTAAATAATTCTTGTGAAAGGAATTTTTAAAATTCTCTTTCATTTTTGTAATGTATTTATTTTTTTTTATTATAAAACGTTTCTTTAATATTGTTGGTTTCTTTGATCAACGAAC

mRNA sequence

CAATCATCCACACATTAAGAAACCAAGAAAGGAACAAAAAGGGGAGGAATTTTTCTTTTAAGGTAAAAAAATATTTTAAAAAATGGCGAAGAAGATGACGGCAGTGCTTCTAACGTGCGTTGTGTTGGTATCCGCATTGCAATTCTCCACTGCTGATAGCCCAGCTGAAATGGAGGCCAGATTCAAGTCGTTCTTCGGTGACTTGAGCGGCGTGGAGGCAAAATTTAAGTCGTGTGCTGCAACCTGCGAGAAGGAATGTGTGGCCAAAGGCGAGACCAGTGAATCATGCAAACCAAAGTGTGAGACAGATTGCGGCAAAAAGGAAGTTTCAGAGAAGTTTAACATCCATCTAACCTGATGAGATGGAAAGGGAAGGAAGAGCTCAGCATAGTGATCGATTTGGTTTAGAACATCGTTATAATTTATTTAAATAATTCTTGTGAAAGGAATTTTTAAAATTCTCTTTCATTTTTGTAATGTATTTATTTTTTTTTATTATAAAACGTTTCTTTAATATTGTTGGTTTCTTTGATCAACGAAC

Coding sequence (CDS)

ATGGCGAAGAAGATGACGGCAGTGCTTCTAACGTGCGTTGTGTTGGTATCCGCATTGCAATTCTCCACTGCTGATAGCCCAGCTGAAATGGAGGCCAGATTCAAGTCGTTCTTCGGTGACTTGAGCGGCGTGGAGGCAAAATTTAAGTCGTGTGCTGCAACCTGCGAGAAGGAATGTGTGGCCAAAGGCGAGACCAGTGAATCATGCAAACCAAAGTGTGAGACAGATTGCGGCAAAAAGGAAGTTTCAGAGAAGTTTAACATCCATCTAACCTGA

Protein sequence

MAKKMTAVLLTCVVLVSALQFSTADSPAEMEARFKSFFGDLSGVEAKFKSCAATCEKECVAKGETSESCKPKCETDCGKKEVSEKFNIHLT
Homology
BLAST of Cp4.1LG19g01170 vs. ExPASy Swiss-Prot
Match: O24172 (Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.7e-04
Identity = 22/41 (53.66%), Postives = 26/41 (63.41%), Query Frame = 0

Query: 45 EAKFKSCAATCEKECVAKGETSESCKPKCETDCGKKEVSEK 86
          EA+FK C  TC KEC  KG     C+ KC+TDC  K+V EK
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEK 42

BLAST of Cp4.1LG19g01170 vs. NCBI nr
Match: KAG6595587.1 (hypothetical protein SDJN03_12140, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167 bits (424), Expect = 4.91e-52
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 0

Query: 1  MAKKMTAVLLTCVVLVSALQFSTADSPAEMEARFKSFFGDLSGVEAKFKSCAATCEKECV 60
          MAKKM AVLL CV+LVSALQFSTADSPAEMEARFKSFFGDLSGVEAK KSCAATCEKECV
Sbjct: 1  MAKKMMAVLLMCVLLVSALQFSTADSPAEMEARFKSFFGDLSGVEAKLKSCAATCEKECV 60

Query: 61 AKGETSESCKPKCETDCGKKEVSEKFNIHLT 91
          AKGETSESCKPKC TDCGKKEVSEKFNIHLT
Sbjct: 61 AKGETSESCKPKCNTDCGKKEVSEKFNIHLT 91

BLAST of Cp4.1LG19g01170 vs. NCBI nr
Match: KAG6595593.1 (hypothetical protein SDJN03_12146, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114 bits (284), Expect = 9.74e-31
Identity = 59/90 (65.56%), Postives = 69/90 (76.67%), Query Frame = 0

Query: 1  MAKKMTAVLLTCVVLVSALQFSTADSPAEMEARFKSFFGDLSGVEAKFKSCAATCEKECV 60
          MAKKM AV+L CV++VSALQFSTAD   EMEA+FKSFF D   VEAKFKSCAATC+K+C 
Sbjct: 1  MAKKMMAVVLMCVLVVSALQFSTADKSTEMEAKFKSFFSDFGTVEAKFKSCAATCQKKC- 60

Query: 61 AKGETSESCKPKCETDCGKKEVSEKFNIHL 90
              T+ SC+ KC+ DCGKKEV  KF I +
Sbjct: 61 ----TNASCRSKCDADCGKKEVENKFKIKI 85

BLAST of Cp4.1LG19g01170 vs. NCBI nr
Match: KAG6595591.1 (hypothetical protein SDJN03_12144, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100 bits (249), Expect = 2.15e-25
Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 0

Query: 1  MAKKMTAVLLTCVVLVSALQFSTAD-SPAEMEARFKSFFGDLSGVEAKFKSCAATCEKEC 60
          MAKKM  V+L CV++VS LQFSTAD S AEMEA+FKSFF D   VEA FK+C+A C K+C
Sbjct: 1  MAKKMMTVVLMCVLMVSILQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKC 60

Query: 61 VAKGETSESCKPKCETDCGKKEVSEKFNIHL 90
                  SC+ KC+ DCGKKEV  KF I +
Sbjct: 61 A-----DASCRNKCDADCGKKEVENKFKIKI 86

BLAST of Cp4.1LG19g01170 vs. NCBI nr
Match: KAG6595588.1 (hypothetical protein SDJN03_12141, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.8 bits (247), Expect = 4.33e-25
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 0

Query: 1  MAKKMTAVLLTCVVLVSALQFSTAD-SPAEMEARFKSFFGDLSGVEAKFKSCAATCEKEC 60
          MAKKM  V+L CV++VS LQFSTAD S AEMEA+FKSFF D   VEA FK+C+A C K+C
Sbjct: 1  MAKKMMTVVLMCVLMVSVLQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKC 60

Query: 61 VAKGETSESCKPKCETDCGKKEVSEKFNIHL 90
                  +C+ KC+ DCGKKEV  KF I +
Sbjct: 61 A-----DAACRNKCDADCGKKEVENKFKIKI 86

BLAST of Cp4.1LG19g01170 vs. NCBI nr
Match: KAG6595589.1 (hypothetical protein SDJN03_12142, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.8 bits (247), Expect = 4.33e-25
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 0

Query: 1  MAKKMTAVLLTCVVLVSALQFSTAD-SPAEMEARFKSFFGDLSGVEAKFKSCAATCEKEC 60
          MAKKM  V+L CV++VS LQFSTAD S AEMEA+FKSFF D   VEA FK+C+A C K+C
Sbjct: 1  MAKKMMTVVLMCVLIVSVLQFSTADKSSAEMEAKFKSFFSDFGSVEANFKTCSAACHKKC 60

Query: 61 VAKGETSESCKPKCETDCGKKEVSEKFNIHL 90
                  +C+ KC+ DCGKKEV  KF I +
Sbjct: 61 A-----DAACRNKCDADCGKKEVENKFKIKI 86

BLAST of Cp4.1LG19g01170 vs. ExPASy TrEMBL
Match: A0A0A0KDP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.33e-17
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 0

Query: 1  MAKKMTAVLLTCVVLVSALQFSTADSPAEMEARFKSFFGDLSGVEAKFKSCAATCEKECV 60
          MAKKM AV L C+V+V++LQF+TA+   E+ A +++ F      +AK+K+C  TCEKEC+
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEV-ASYEAKF------DAKYKACFVTCEKECI 60

Query: 61 AKGETSESCKPKCETDCGKKEVSEKFNIH 89
           +G     C+ KC+ DCG KE ++K +IH
Sbjct: 61 ERGSGHSYCEVKCDEDCGAKEAADKLHIH 82

BLAST of Cp4.1LG19g01170 vs. ExPASy TrEMBL
Match: A0A5D3BCS2 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00230 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.56e-16
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 0

Query: 1  MAKKMTAVLLTCVVLVSALQFSTA---DSPAEMEARFKSFFGDLSGVEAKFKSCAATCEK 60
          MAKKM A+ L C+V+V+ALQF++A   D  A+ EA+F          +AK+KSC  TCEK
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKF----------DAKYKSCFKTCEK 60

Query: 61 ECVAKGETSESCKPKCETDCGKKEVSEKFNIHL 90
          EC+  G     C+ KC+ DC +KEV++K +I L
Sbjct: 61 ECLENGSGQSYCEVKCDEDCNEKEVADKLHIEL 83

BLAST of Cp4.1LG19g01170 vs. ExPASy TrEMBL
Match: A0A1S3C530 (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.56e-16
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 0

Query: 1  MAKKMTAVLLTCVVLVSALQFSTA---DSPAEMEARFKSFFGDLSGVEAKFKSCAATCEK 60
          MAKKM A+ L C+V+V+ALQF++A   D  A+ EA+F          +AK+KSC  TCEK
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKF----------DAKYKSCFKTCEK 60

Query: 61 ECVAKGETSESCKPKCETDCGKKEVSEKFNIHL 90
          EC+  G     C+ KC+ DC +KEV++K +I L
Sbjct: 61 ECLENGSGQSYCEVKCDEDCNEKEVADKLHIEL 83

BLAST of Cp4.1LG19g01170 vs. ExPASy TrEMBL
Match: A0A6J1EQ21 (major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.35e-16
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 0

Query: 1  MAKKMTAVLLTCVVLVSALQFSTADSPAEMEARFKSFFGDLSGVEAKFKSCAATCEKECV 60
          MAKKM AVLL C+V+V+ALQ S+A   A+ EA++++ F      EAK++ C   CEKEC+
Sbjct: 1  MAKKMIAVLLVCIVVVAALQVSSATESAK-EAKYEAKF------EAKYRLCYEKCEKECL 60

Query: 61 AKGETSESCKPKCETDCGKKEVSEKFNIHL 90
           KG     C+ KC+ DCG+KE ++K +I +
Sbjct: 61 EKGNGQSFCEVKCDEDCGEKEAADKLHIKV 83

BLAST of Cp4.1LG19g01170 vs. ExPASy TrEMBL
Match: A0A5A7T8P0 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002620 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.84e-15
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 0

Query: 1  MAKKMTAVLLTCVVLVSALQFSTA---DSPAEMEARFKSFFGDLSGVEAKFKSCAATCEK 60
          MAKKM AV L C+V+V+ LQF+TA   D  A  EA+F          +AK+K+C   CEK
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFATANKEDEVANYEAKF----------DAKYKACFVICEK 60

Query: 61 ECVAKGETSESCKPKCETDCGKKEVSEKFNIHL 90
          ECV +G     C+ KC+ DCG KE ++K  I L
Sbjct: 61 ECVERGGGHSYCEVKCDEDCGAKEAADKLGIIL 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O241721.7e-0453.66Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
KAG6595587.14.91e-5294.51hypothetical protein SDJN03_12140, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595593.19.74e-3165.56hypothetical protein SDJN03_12146, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595591.12.15e-2559.34hypothetical protein SDJN03_12144, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595588.14.33e-2558.24hypothetical protein SDJN03_12141, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595589.14.33e-2558.24hypothetical protein SDJN03_12142, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0KDP78.33e-1746.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102490 PE=4 SV=1[more]
A0A5D3BCS23.56e-1646.24Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3C5303.56e-1646.24major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 ... [more]
A0A6J1EQ217.35e-1646.67major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354... [more]
A0A5A7T8P05.84e-1546.24Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036466Pollen allergen ole e 6 superfamilyGENE3D1.10.287.720Pollen allergen ole e 6coord: 44..89
e-value: 6.4E-11
score: 43.6
IPR036466Pollen allergen ole e 6 superfamilySUPERFAMILY111388Pollen allergen ole e 6coord: 45..86
IPR015333Pollen allergen ole e 6PFAMPF09253Ole_e_6coord: 51..87
e-value: 1.7E-7
score: 31.0
IPR015333Pollen allergen ole e 6PANTHERPTHR35632MAJOR POLLEN ALLERGEN OLE E 6-LIKEcoord: 1..90
NoneNo IPR availablePANTHERPTHR35632:SF5SUBFAMILY NOT NAMEDcoord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g01170.1Cp4.1LG19g01170.1mRNA