Cp4.1LG19g01160 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g01160
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	major pollen allergen Ole e 6-like
Location	Cp4.1LG19: 956477 .. 957086 (+)
RNA-Seq Expression	Cp4.1LG19g01160
Synteny	Cp4.1LG19g01160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGAAGATGATGGCAGTAGTTCTAATGTGTGTTTTGATGGTATCGGCACTGCAATTCTCCACGGCTGACAAATCATCAGCTGAAATGGAGGCAAAATTCAAGTCGTTCTTTAACGATTTTGGCTCCGTGGAAGCAAATTTTAAGACATGTTCTGCAGCCTGCCATAAGAAATGCGCTGATGCTGCATGTCGTAATAAGTGTGATGCAGATTGCGGCAAAAAGGAAGTTGAAAGTACATTTTTCTATCTTTTAGACAAAAATCGTTTTAACATTCAATATCAGAAAATGTATTAATATCTACAAATATAATAGTTTTAAATGTATAGTTTTCTCACTGAATATTGGTAGACTTACTAGACAAGTTTGATTTCATATCAAATTTGACTTTCTTTTTTTATTTAAGTTTGTGAGATTTTTACTTTTTAATTTTGTGCATTATTATTAATTTTTGTTGTGTTTATTTTGCAGATAAATTTAAGATCAAGATACCCCATTGATAATCGAGGAAGATAAAATGAAAAGTGAGCGGGGCAAGAATGATTAATTTGATGTAGAACATCAAATATAATTTATTTAAATAATATTTATTTCATTTTTGTAATTT

mRNA sequence

ATGGCAAAGAAGATGATGGCAGTAGTTCTAATGTGTGTTTTGATGGTATCGGCACTGCAATTCTCCACGGCTGACAAATCATCAGCTGAAATGGAGGCAAAATTCAAGTCGTTCTTTAACGATTTTGGCTCCGTGGAAGCAAATTTTAAGACATGTTCTGCAGCCTGCCATAAGAAATGCGCTGATGCTGCATGTCGTAATAAGTGTGATGCAGATTGCGGCAAAAAGGAAGTTGAAAATAAATTTAAGATCAAGATACCCCATTGATAATCGAGGAAGATAAAATGAAAAGTGAGCGGGGCAAGAATGATTAATTTGATGTAGAACATCAAATATAATTTATTTAAATAATATTTATTTCATTTTTGTAATTT

Coding sequence (CDS)

ATGGCAAAGAAGATGATGGCAGTAGTTCTAATGTGTGTTTTGATGGTATCGGCACTGCAATTCTCCACGGCTGACAAATCATCAGCTGAAATGGAGGCAAAATTCAAGTCGTTCTTTAACGATTTTGGCTCCGTGGAAGCAAATTTTAAGACATGTTCTGCAGCCTGCCATAAGAAATGCGCTGATGCTGCATGTCGTAATAAGTGTGATGCAGATTGCGGCAAAAAGGAAGTTGAAAATAAATTTAAGATCAAGATACCCCATTGA

Protein sequence

MAKKMMAVVLMCVLMVSALQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKCADAACRNKCDADCGKKEVENKFKIKIPH

Homology

[Close]

BLAST of Cp4.1LG19g01160 vs. NCBI nr
Match: KAG6595588.1 (hypothetical protein SDJN03_12141, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168 bits (425), Expect = 2.78e-52
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MAKKMMAVVLMCVLMVSALQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKC 60
          MAKKMM VVLMCVLMVS LQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKC
Sbjct: 1  MAKKMMTVVLMCVLMVSVLQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKC 60

Query: 61 ADAACRNKCDADCGKKEVENKFKIKIP 87
          ADAACRNKCDADCGKKEVENKFKIKIP
Sbjct: 61 ADAACRNKCDADCGKKEVENKFKIKIP 87

[Close]

BLAST of Cp4.1LG19g01160 vs. NCBI nr
Match: KAG6595589.1 (hypothetical protein SDJN03_12142, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167 bits (424), Expect = 3.95e-52
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAKKMMAVVLMCVLMVSALQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKC 60
          MAKKMM VVLMCVL+VS LQFSTADKSSAEMEAKFKSFF+DFGSVEANFKTCSAACHKKC
Sbjct: 1  MAKKMMTVVLMCVLIVSVLQFSTADKSSAEMEAKFKSFFSDFGSVEANFKTCSAACHKKC 60

Query: 61 ADAACRNKCDADCGKKEVENKFKIKIPH 88
          ADAACRNKCDADCGKKEVENKFKIKIPH
Sbjct: 61 ADAACRNKCDADCGKKEVENKFKIKIPH 88

[Close]

BLAST of Cp4.1LG19g01160 vs. NCBI nr
Match: KAG6595591.1 (hypothetical protein SDJN03_12144, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166 bits (421), Expect = 1.13e-51
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MAKKMMAVVLMCVLMVSALQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKC 60
          MAKKMM VVLMCVLMVS LQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKC
Sbjct: 1  MAKKMMTVVLMCVLMVSILQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKC 60

Query: 61 ADAACRNKCDADCGKKEVENKFKIKIP 87
          ADA+CRNKCDADCGKKEVENKFKIKIP
Sbjct: 61 ADASCRNKCDADCGKKEVENKFKIKIP 87

[Close]

BLAST of Cp4.1LG19g01160 vs. NCBI nr
Match: KAG6595592.1 (hypothetical protein SDJN03_12145, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163 bits (413), Expect = 1.89e-50
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MAKKMMAVVLMCVLMVSALQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKC 60
          MAKKMMAVVLM VLM+S LQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKC
Sbjct: 1  MAKKMMAVVLMSVLMISVLQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKC 60

Query: 61 ADAACRNKCDADCGKKEVENKFKIKIP 87
          ADA CRNKCDADCGKKEVENKFKIKIP
Sbjct: 61 ADAPCRNKCDADCGKKEVENKFKIKIP 87

[Close]

BLAST of Cp4.1LG19g01160 vs. NCBI nr
Match: KAG6595590.1 (hypothetical protein SDJN03_12143, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148 bits (374), Expect = 1.84e-44
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MAKKMMAVVLMCVLMVSALQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKC 60
          MAKKMMA+VLMCVLMV  LQFSTADKSSAEMEAKFKSFF+DFGSVEANFKTCSAACHKKC
Sbjct: 1  MAKKMMAMVLMCVLMVLVLQFSTADKSSAEMEAKFKSFFSDFGSVEANFKTCSAACHKKC 60

Query: 61 ADAACRNKCDADCGKKEVENKF 82
          ADA CRNKCDADCGKKEVE+ F
Sbjct: 61 ADAPCRNKCDADCGKKEVESTF 82

[Close]

BLAST of Cp4.1LG19g01160 vs. ExPASy TrEMBL
Match: A0A0A0KDP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.17e-11
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 1  MAKKMMAVVLMCVLMVSALQFSTADKSS--AEMEAKFKSFFNDFGSVEANFKTCSAACHK 60
          MAKKMMAV LMC+++V++LQF+TA+K    A  EAKF          +A +K C   C K
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKF----------DAKYKACFVTCEK 60

Query: 61 KCADAA-----CRNKCDADCGKKEVENKFKI 84
          +C +       C  KCD DCG KE  +K  I
Sbjct: 61 ECIERGSGHSYCEVKCDEDCGAKEAADKLHI 81

[Close]

BLAST of Cp4.1LG19g01160 vs. ExPASy TrEMBL
Match: A0A5A7T8P0 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002620 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.28e-11
Identity = 40/91 (43.96%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 1  MAKKMMAVVLMCVLMVSALQFSTADKSS--AEMEAKFKSFFNDFGSVEANFKTCSAACHK 60
          MAKKMMAV LMC+++V+ LQF+TA+K    A  EAKF          +A +K C   C K
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFATANKEDEVANYEAKF----------DAKYKACFVICEK 60

Query: 61 KCADAA-----CRNKCDADCGKKEVENKFKI 84
          +C +       C  KCD DCG KE  +K  I
Sbjct: 61 ECVERGGGHSYCEVKCDEDCGAKEAADKLGI 81

[Close]

BLAST of Cp4.1LG19g01160 vs. ExPASy TrEMBL
Match: A0A1S3CAJ3 (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103498825 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.28e-11
Identity = 40/91 (43.96%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 1  MAKKMMAVVLMCVLMVSALQFSTADKSS--AEMEAKFKSFFNDFGSVEANFKTCSAACHK 60
          MAKKMMAV LMC+++V+ LQF+TA+K    A  EAKF          +A +K C   C K
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFATANKEDEVANYEAKF----------DAKYKACFVICEK 60

Query: 61 KCADAA-----CRNKCDADCGKKEVENKFKI 84
          +C +       C  KCD DCG KE  +K  I
Sbjct: 61 ECVERGGGHSYCEVKCDEDCGAKEAADKLGI 81

[Close]

BLAST of Cp4.1LG19g01160 vs. ExPASy TrEMBL
Match: A0A5D3BCS2 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00230 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.59e-11
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 1  MAKKMMAVVLMCVLMVSALQFSTADKSS--AEMEAKFKSFFNDFGSVEANFKTCSAACHK 60
          MAKKM+A+ LMC+++V+ALQF++A+K    A+ EAKF          +A +K+C   C K
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKF----------DAKYKSCFKTCEK 60

Query: 61 KCAD-----AACRNKCDADCGKKEVENKFKIKI 86
          +C +     + C  KCD DC +KEV +K  I++
Sbjct: 61 ECLENGSGQSYCEVKCDEDCNEKEVADKLHIEL 83

[Close]

BLAST of Cp4.1LG19g01160 vs. ExPASy TrEMBL
Match: A0A1S3C530 (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.59e-11
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 1  MAKKMMAVVLMCVLMVSALQFSTADKSS--AEMEAKFKSFFNDFGSVEANFKTCSAACHK 60
          MAKKM+A+ LMC+++V+ALQF++A+K    A+ EAKF          +A +K+C   C K
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKF----------DAKYKSCFKTCEK 60

Query: 61 KCAD-----AACRNKCDADCGKKEVENKFKIKI 86
          +C +     + C  KCD DC +KEV +K  I++
Sbjct: 61 ECLENGSGQSYCEVKCDEDCNEKEVADKLHIEL 83

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g01160 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG19g01160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595588.1	2.78e-52	97.70	hypothetical protein SDJN03_12141, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6595589.1	3.95e-52	95.45	hypothetical protein SDJN03_12142, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6595591.1	1.13e-51	96.55	hypothetical protein SDJN03_12144, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6595592.1	1.89e-50	95.40	hypothetical protein SDJN03_12145, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6595590.1	1.84e-44	91.46	hypothetical protein SDJN03_12143, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG19g01160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDP7	2.17e-11	43.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102490 PE=4 SV=1	[more]
A0A5A7T8P0	2.28e-11	43.96	Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3CAJ3	2.28e-11	43.96	major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103498825 PE=4 ...	[more]
A0A5D3BCS2	4.59e-11	40.86	Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C530	4.59e-11	40.86	major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 ...	[more]

BLAST of Cp4.1LG19g01160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	1.10.287.720	Pollen allergen ole e 6	coord: 45..87 e-value: 4.5E-7 score: 31.3
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	111388	Pollen allergen ole e 6	coord: 46..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g01160.1	Cp4.1LG19g01160.1	mRNA