Cp4.1LG19g00840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG19g00840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionNADH-quinone oxidoreductase subunit I
LocationCp4.1LG19: 680939 .. 682528 (+)
RNA-Seq ExpressionCp4.1LG19g00840
SyntenyCp4.1LG19g00840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTTTAATCTCAGTAGCGCCTCTTCTGTACGCGATTCTCTTTTGCGGCTCCTTCACAAGAAGGCCTCTGATCAGATCCCTCGCCTGTAGACTCACCTGCGGCGTCTCCGGGAATCTAAGCGGCTGTCCGACAACATTAAACAGAGTAGCTCTATTTCCAGATCCTTTAAACGGCGTTGTTCCGTGAAGAAGCTCGTAGAGGAAGATTCCAAATGTCCACCAGTCGACGGCGCTGCCATGGCCTTCGCCTTGGATGATCTCCGGCGCTAAATACTCGTGCGTGCCGACGAACGACATCGATCTAACATTCGTCGGCTCCGCCATGAGTTCCGGCAATGCTCCGCCGACGAAGAGGCCGAAGTCGGATTTCGACTTGCGATTCTTCTTGGAAGGGAGGATGCGAGGGAGGAAGTTGGAAGGCTGCATACATCCATGGACGGCGAACTCGTCGTCGAGGATACCGCCGCTGCCGCTGCCGCCACCGTTGGTGCCGGCGTGTCCGGTGGTGGAGCTGCCATTGACATTGACGGAGGAGGATTTGACGAGAGTAGGGCTGACGGAGCAGCGGAGAGAGAGGTCGAAATCGGAGAGCATGATGTGACCTTCGTCTCGGATTAACAGGTTCTCTGGTTTCAAATCTCTGTAAACTATTCCTAACATGTGAAGATATTCGAGTGCTAATAGAACTTCTGATGCATAGAATCTGAAATTATGAATCAAGAACTTGTGATTAAGCAAAATCCAAGAGTTTTCAAATTAAGAATCGAAGAATCGGAAATGATGATATGAACATGAACATGAACATGAACATGAACCTGGCAGCTTCTTCTGTGAAATACTTGTTAGGTTGTTTCTGACGAAGAGAATGAAGATTTCCGCCGCTACAAAACTCCATAACCAAGCAATAGAACTTATCAGTTTCGAAATAGGAATACAGAGTCGGCAAAAATGGATGATCCAAAAGCCCTAAAATCTCCCTCTCCGTCTGTGCCCTAACAACCTTATTCCGACTCGCCAATGAAGCTTTGTCCATAACTTTCATGGCGAAAAACGTATCAGTTCCTCTCAATTCCACCAGATAAACACTTCCGATATCGCCATAACCAAGCCGCTTCAGAAGCCTGAAATGGCTCAGATTCAACTGGCCTCCTTTCGACACCATGTTCACAGCGTCCCATCGCACATCCCCGCCTGTGTGCGGTTTAATCACCATTCCTAGCGTCTCCATGCCATCGCTGCCGCTCTTCGTCGGAAAGAAAGTAGAGTTGTTGTTATTGTTGATGTTCTTCATGTTTGTTGCAGGTGCACCGCTCGGAATCGGCGCAATCGACCCCCCTGCCTGCCCGGAATGAAACTCGTGGTTCATCGTCGCCGTCTGATTCCCGGAATTTATGCCGTTTTTGGCGATTTGATCGATTCTTCTGAGAGAATCCGGAGGATTTTTCACGAAATTTGGTGCGTTTACGTTCATTCCTCCGTGACAATCGTTTTCCCCCTTTGATGAGTTGCTAAACATCTGAATTCAAGACGATGATCATCAATAATTTTCATAATCATGTAAAACACATCTAATTCAACAATCTCATG

mRNA sequence

ATGCTGAAGATTCCAAATGTCCACCAGTCGACGGCGCTGCCATGGCCTTCGCCTTGGATGATCTCCGGCGCTAAATACTCGTGCGTGCCGACGAACGACATCGATCTAACATTCGTCGGCTCCGCCATGAGTTCCGGCAATGCTCCGCCGACGAAGAGGCCGAAGTCGGATTTCGACTTGCGATTCTTCTTGGAAGGGAGGATGCGAGGGAGGAAGTTGGAAGGCTGCATACATCCATGGACGGCGAACTCGTCGTCGAGGATACCGCCGCTGCCGCTGCCGCCACCGTTGGTGCCGGCGTGTCCGGTGGTGGAGCTGCCATTGACATTGACGGAGGAGGATTTGACGAGAGTAGGGCTGACGGAGCAGCGGAGAGAGAGGTCGAAATCGGAGAGCATGATGTGCACCGCTCGGAATCGGCGCAATCGACCCCCCTGCCTGCCCGGAATGAAACTCGTGGTTCATCGTCGCCGTCTGATTCCCGGAATTTATGCCGTTTTTGGCGATTTGATCGATTCTTCTGAGAGAATCCGGAGGATTTTTCACGAAATTTGGTGCGTTTACGTTCATTCCTCCGTGACAATCGTTTTCCCCCTTTGATGAGTTGCTAAACATCTGAATTCAAGACGATGATCATCAATAATTTTCATAATCATGTAAAACACATCTAATTCAACAATCTCATG

Coding sequence (CDS)

ATGCTGAAGATTCCAAATGTCCACCAGTCGACGGCGCTGCCATGGCCTTCGCCTTGGATGATCTCCGGCGCTAAATACTCGTGCGTGCCGACGAACGACATCGATCTAACATTCGTCGGCTCCGCCATGAGTTCCGGCAATGCTCCGCCGACGAAGAGGCCGAAGTCGGATTTCGACTTGCGATTCTTCTTGGAAGGGAGGATGCGAGGGAGGAAGTTGGAAGGCTGCATACATCCATGGACGGCGAACTCGTCGTCGAGGATACCGCCGCTGCCGCTGCCGCCACCGTTGGTGCCGGCGTGTCCGGTGGTGGAGCTGCCATTGACATTGACGGAGGAGGATTTGACGAGAGTAGGGCTGACGGAGCAGCGGAGAGAGAGGTCGAAATCGGAGAGCATGATGTGCACCGCTCGGAATCGGCGCAATCGACCCCCCTGCCTGCCCGGAATGAAACTCGTGGTTCATCGTCGCCGTCTGATTCCCGGAATTTATGCCGTTTTTGGCGATTTGATCGATTCTTCTGAGAGAATCCGGAGGATTTTTCACGAAATTTGGTGCGTTTACGTTCATTCCTCCGTGACAATCGTTTTCCCCCTTTGA

Protein sequence

MLKIPNVHQSTALPWPSPWMISGAKYSCVPTNDIDLTFVGSAMSSGNAPPTKRPKSDFDLRFFLEGRMRGRKLEGCIHPWTANSSSRIPPLPLPPPLVPACPVVELPLTLTEEDLTRVGLTEQRRERSKSESMMCTARNRRNRPPCLPGMKLVVHRRRLIPGIYAVFGDLIDSSERIRRIFHEIWCVYVHSSVTIVFPL
Homology
[Close]
BLAST of Cp4.1LG19g00840 vs. NCBI nr
Match: KYP32038.1 (hypothetical protein KK1_047378, partial [Cajanus cajan])

HSP 1 Score: 124 bits (312), Expect = 3.42e-33
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 0 

Query: 3  KIPNVHQSTALPWPSPWMISGAKYSCVPTNDIDLTFVGSAMSSGNAPPTKRPKSDFDLRF 62
          KIP VHQSTALP PSP +ISGA+YSCVPT DIDLTFVGSA+SSG  PPT RPKSDFDLRF
Sbjct: 17 KIPKVHQSTALPCPSPRIISGARYSCVPTKDIDLTFVGSAISSGRLPPTMRPKSDFDLRF 76

Query: 63 FLEGRMRGRKLEGCIHPWT 81
          F   +MRG+KLE  + P+T
Sbjct: 77 FFGCKMRGKKLEDSMQPYT 95

[Close]
BLAST of Cp4.1LG19g00840 vs. NCBI nr
Match: CAA7407154.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 80.5 bits (197), Expect = 9.70e-15
Identity = 45/72 (62.50%), Postives = 50/72 (69.44%), Query Frame = 0 

Query: 3  KIPNVHQSTALPWPSPWMISGAKYSCVPTNDIDLTFVGSAMSSGNAPPTKRPKSDFDLRF 62
          KIP VHQSTALPWPSP +ISGA+YS VPTND++   VGSAMSSGN   T    S F  R 
Sbjct: 25 KIPKVHQSTALPWPSPLIISGARYSWVPTNDMERASVGSAMSSGNGL-TWFTTSGFGFRS 84

Query: 63 FL--EGRMRGRK 72
          FL  E + RG K
Sbjct: 85 FLGLEEKKRGEK 95

[Close]
BLAST of Cp4.1LG19g00840 vs. NCBI nr
Match: KAG0499118.1 (hypothetical protein HPP92_003809 [Vanilla planifolia])

HSP 1 Score: 76.3 bits (186), Expect = 5.08e-14
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 2  LKIPNVHQSTALPWPSPWMISGAKYSCVPTNDIDLTFVGSAMSSGN 47
          +KIP VHQSTALPWPSP MISGA+YS VPT D+D   +GSAMSSGN
Sbjct: 1  MKIPKVHQSTALPWPSPLMISGARYSWVPTKDMDRASLGSAMSSGN 46

[Close]
BLAST of Cp4.1LG19g00840 vs. NCBI nr
Match: KAB8113704.1 (hypothetical protein EE612_052799 [Oryza sativa] >BAT12073.1 Os10g0562550 [Oryza sativa Japonica Group])

HSP 1 Score: 73.6 bits (179), Expect = 7.53e-13
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 5   PNVHQSTALPWPSPWMISGAKYSCVPTNDIDLTFVGSAMSSGNA 48
           PNVHQSTALP PSP MISGA+YSCVPTNDID   VGS  +SGNA
Sbjct: 82  PNVHQSTALPCPSPLMISGARYSCVPTNDIDRAPVGSTTTSGNA 125

[Close]
BLAST of Cp4.1LG19g00840 vs. NCBI nr
Match: KYP71095.1 (hypothetical protein KK1_010337, partial [Cajanus cajan])

HSP 1 Score: 70.9 bits (172), Expect = 1.67e-12
Identity = 41/69 (59.42%), Postives = 47/69 (68.12%), Query Frame = 0 

Query: 5  PNVHQSTALPWPSPWMISGAKYSCVPTNDIDLTFVGSAMSSGNAPPTKRPKSDFD-LRFF 64
          PNVHQSTA P PS  MISGA+YSCVPTN++DL  VGSA S GN   T   +S F+ L F 
Sbjct: 1  PNVHQSTAAPCPSSLMISGARYSCVPTNELDLASVGSATSCGN-DLTWVARSTFNFLAFA 60

Query: 65 LEGRMRGRK 72
          + GR  G K
Sbjct: 61 VVGRNLGLK 68

[Close]
BLAST of Cp4.1LG19g00840 vs. ExPASy TrEMBL
Match: A0A151QP07 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_047378 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 1.66e-33
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 0 

Query: 3  KIPNVHQSTALPWPSPWMISGAKYSCVPTNDIDLTFVGSAMSSGNAPPTKRPKSDFDLRF 62
          KIP VHQSTALP PSP +ISGA+YSCVPT DIDLTFVGSA+SSG  PPT RPKSDFDLRF
Sbjct: 17 KIPKVHQSTALPCPSPRIISGARYSCVPTKDIDLTFVGSAISSGRLPPTMRPKSDFDLRF 76

Query: 63 FLEGRMRGRKLEGCIHPWT 81
          F   +MRG+KLE  + P+T
Sbjct: 77 FFGCKMRGKKLEDSMQPYT 95

[Close]
BLAST of Cp4.1LG19g00840 vs. ExPASy TrEMBL
Match: T1LK88 (Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 3.30e-24
Identity = 68/134 (50.75%), Postives = 77/134 (57.46%), Query Frame = 0 

Query: 4   IPNVHQSTALPWPSPWMISGAKYSCVPTNDIDLTFVGSAMSSGNAPPTKRPKSDFDLRFF 63
           IP VHQSTALPWPSP +ISGAKYSCVPTNDID   +GSAMSSG+   T    S F  R F
Sbjct: 1   IPKVHQSTALPWPSPLIISGAKYSCVPTNDIDRASLGSAMSSGHGR-TWLTTSGFGFRSF 60

Query: 64  LE-GRMRGRK-LEGCIHPWTANSSSRIPPLPLPPPLVPACPVVELPLTLTEEDLTRVGLT 123
            +  + RG K + G +H                     A  V  L      +DL RVGLT
Sbjct: 61  FDFEKNRGPKHVVGAVHDGCIMQDGS------------AASVSGL------DDLIRVGLT 115

Query: 124 EQRRERSKSESMMC 135
            QRRERSKS+SMMC
Sbjct: 121 VQRRERSKSDSMMC 115

[Close]
BLAST of Cp4.1LG19g00840 vs. ExPASy TrEMBL
Match: A0A7I8LCW6 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_13017832 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.70e-15
Identity = 45/72 (62.50%), Postives = 50/72 (69.44%), Query Frame = 0 

Query: 3  KIPNVHQSTALPWPSPWMISGAKYSCVPTNDIDLTFVGSAMSSGNAPPTKRPKSDFDLRF 62
          KIP VHQSTALPWPSP +ISGA+YS VPTND++   VGSAMSSGN   T    S F  R 
Sbjct: 25 KIPKVHQSTALPWPSPLIISGARYSWVPTNDMERASVGSAMSSGNGL-TWFTTSGFGFRS 84

Query: 63 FL--EGRMRGRK 72
          FL  E + RG K
Sbjct: 85 FLGLEEKKRGEK 95

[Close]
BLAST of Cp4.1LG19g00840 vs. ExPASy TrEMBL
Match: A0A0P0XXJ5 (Os10g0562550 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0562550 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.64e-13
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 5   PNVHQSTALPWPSPWMISGAKYSCVPTNDIDLTFVGSAMSSGNA 48
           PNVHQSTALP PSP MISGA+YSCVPTNDID   VGS  +SGNA
Sbjct: 82  PNVHQSTALPCPSPLMISGARYSCVPTNDIDRAPVGSTTTSGNA 125

[Close]
BLAST of Cp4.1LG19g00840 vs. ExPASy TrEMBL
Match: A0A151TVM9 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_010337 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.10e-13
Identity = 41/69 (59.42%), Postives = 47/69 (68.12%), Query Frame = 0 

Query: 5  PNVHQSTALPWPSPWMISGAKYSCVPTNDIDLTFVGSAMSSGNAPPTKRPKSDFD-LRFF 64
          PNVHQSTA P PS  MISGA+YSCVPTN++DL  VGSA S GN   T   +S F+ L F 
Sbjct: 1  PNVHQSTAAPCPSSLMISGARYSCVPTNELDLASVGSATSCGN-DLTWVARSTFNFLAFA 60

Query: 65 LEGRMRGRK 72
          + GR  G K
Sbjct: 61 VVGRNLGLK 68

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g00840 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG19g00840 vs. NCBI nr
Match NameE-valueIdentityDescription
KYP32038.13.42e-3374.68hypothetical protein KK1_047378, partial [Cajanus cajan][more]
CAA7407154.19.70e-1562.50unnamed protein product [Spirodela intermedia][more]
KAG0499118.15.08e-1476.09hypothetical protein HPP92_003809 [Vanilla planifolia][more]
KAB8113704.17.53e-1379.55hypothetical protein EE612_052799 [Oryza sativa] >BAT12073.1 Os10g0562550 [Oryza... [more]
KYP71095.11.67e-1259.42hypothetical protein KK1_010337, partial [Cajanus cajan][more]
BLAST of Cp4.1LG19g00840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A151QP071.66e-3374.68Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_047378 PE=4 S... [more]
T1LK883.30e-2450.75Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1[more]
A0A7I8LCW64.70e-1562.50Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_13017832 PE=4 SV... [more]
A0A0P0XXJ53.64e-1379.55Os10g0562550 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0562550 PE... [more]
A0A151TVM98.10e-1359.42Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_010337 PE=4 S... [more]
BLAST of Cp4.1LG19g00840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g00840.1Cp4.1LG19g00840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045488 pectin metabolic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008168 methyltransferase activity