Cp4.1LG18g08010 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g08010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionpentatricopeptide repeat-containing protein At3g47530
LocationCp4.1LG18: 7461012 .. 7463092 (-)
RNA-Seq ExpressionCp4.1LG18g08010
SyntenyCp4.1LG18g08010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGTGATCTTCCGGCGATGCCGTTGTTCGGCGGATCGGCATCTTCATTCTCTTCGCCTTCCTCGTTTCGCATCCACCGCTTCACTCCTTCACTCTCCGATCTCTCTGCTTTCTTCCAAATTTCGTGAACAAAACTCAACGCTTCGCTTCGATAGAGAGCCGCTGATTTCTCTCATAAAGTCATGCACCCACAAATCACAATTGCTGCAAATCCATGCCCACATGATCCGCACTTCTTTCATTCAAGACCCCATTGTTTCCCTCCGCTTCTTGACTCGCATCGTTTCCGCGCCTTTTCGCGAATTGGGCTATTCGCGAAGATTCTTCTCTCAGCTGACGAACCCATTTGTTTCTCATTACAATACGCTGTTGAGAGCCTACTCGTTGAGCCGTTCACCTCTGGAGGGATTGTACATGTACAGAGATATGGAGAGGCAAGGTGTTCATGCTGATCCTTTGTCTTCTTCCTTTGCCGTTAAGTCGTGTATAAGAATGCTTTCATTATTTAGTGGGATTCAGATTCACGCAAGGATCTTTAGAAATGGGCATCAATCGGATAGTCTTTTGCTCACCTCCATGATGGATTTGTATTCTCATTGTGGCAAACTTGAGGATGCATGCAAACTGTTCGATGAAATTCCTCAAAGAGATGTTGTTGCTTGGAACGTTTTGATTTCGTGTCTAACTCGAAATAAACGAACAAGGGATGCTTTGGGTTTGTTTGAGATCATGCAGAGTCCAACGTATCTCTGCAAACCTGATAAAGTTACCTGTTTACTTCTTCTCCAAGCCTGTGCAGACTTGAATGCATTGGAATTCGGCGAAAGGATTCATAGTTATATTCAACAGAACGATTATAATACAGAGAGTAATTTGTGCAATTCGCTGATATCCATGTATTCGCGGTGTGGACGTGTGGATAAGGCTTATGAAGTGTTTGATAAAATGCCTGAGAAAAATGTTGTTTCATGGAGTGCGATGATTTCCGGGTTATCAATGAATGGACACGGAAGAGAAGCTATTGAAGCGTTTTGGGCAATGCAAAAGAAGGGTGTTGAGCCTGATGATCATACTTTCACTGCAGTTCTTTCTGCTTGTAGCCATTGTGGCCTGGTTGATGAAGGAATGGCGTTTTTTGATCGTATGAGACAAGAGTTCATGATAGTTCCCACCGTCCATCACTATGGATGTATGGTTGATCTCTTGGGTCGTGCTGGAATGCTCGACCAAGCCTATCAGCTCGTAATGTCAATGGAGGTGAATCCAGATGCGACAATGTGGAGGACCCTTCTTGGAGCTTGCAGAATTCACGGTCATGCGAACCTTGGGGAGCGCATAATTGAGCATTTGATTGAACTCAAATCTCAAGAAGCAGGTGATTATGTGCTGCTGCTGAACATTTATTCTTCAGCTGGGAACTGGGACAAGGTAACTGAATTGAGGAAATTCATGAAGGAAAGGGGTATCTATACTACACCCGGCTGCACCACAATAGAACTGAATGGGGTGGTGCATGAGTTTGCTGTGGATGATATTTCGCATCCGATGAAGGACAAGATCTACAAGCAGCTGGATGAGATCAACCAGCAGCTAAAGATTGCAGGTTATGAAGCTGAAATATCATCTGAATTACACAACTTGAAGGCAGAAGATAAGGGGTATGCGCTTTCTTACCATAGTGAGAAATTGGCCATAGCCTTTGGGGTTCTTGCAACCCCGCCAGGAAGAACCATCAGAGTGGCAAACAATCTTCGTACTTGCATGGATTGTCATAACTTTGCTAAGTATGTCTCAAGTGTTTATAACAGAAAAGTGGTTGTTAGGGACCGAAGTCGGTTCCATCATTTCCGAGAGGGTCGGTGTTCCTGCAATGATTATTGGTAGCAACACCGTCCATTCTCAGATTCTCAGAATATAGACTGACCCACAAGGAAAAATTCCCCAGAGCATGCAGCTTGTTCTAATGGCCACAGGCTCGTTCTGAAGATGGGAGAGTTGTTGTCACAGGCGGGAGGATGATATTACAACAGAAACTGGATGACAGTTGCCTGTTGGATGGAAAGTTGGTGTCCGACTAA

mRNA sequence

ATGACTGTGATCTTCCGGCGATGCCGTTGTTCGGCGGATCGGCATCTTCATTCTCTTCGCCTTCCTCGTTTCGCATCCACCGCTTCACTCCTTCACTCTCCGATCTCTCTGCTTTCTTCCAAATTTCGTGAACAAAACTCAACGCTTCGCTTCGATAGAGAGCCGCTGATTTCTCTCATAAAGTCATGCACCCACAAATCACAATTGCTGCAAATCCATGCCCACATGATCCGCACTTCTTTCATTCAAGACCCCATTGTTTCCCTCCGCTTCTTGACTCGCATCGTTTCCGCGCCTTTTCGCGAATTGGGCTATTCGCGAAGATTCTTCTCTCAGCTGACGAACCCATTTGTTTCTCATTACAATACGCTGTTGAGAGCCTACTCGTTGAGCCGTTCACCTCTGGAGGGATTGTACATGTACAGAGATATGGAGAGGCAAGGTGTTCATGCTGATCCTTTGTCTTCTTCCTTTGCCGTTAAGTCGTGTATAAGAATGCTTTCATTATTTAGTGGGATTCAGATTCACGCAAGGATCTTTAGAAATGGGCATCAATCGGATAGTCTTTTGCTCACCTCCATGATGGATTTGTATTCTCATTGTGGCAAACTTGAGGATGCATGCAAACTGTTCGATGAAATTCCTCAAAGAGATGTTGTTGCTTGGAACGTTTTGATTTCGTGTCTAACTCGAAATAAACGAACAAGGGATGCTTTGGGCGGGAGGATGATATTACAACAGAAACTGGATGACAGTTGCCTGTTGGATGGAAAGTTGGTGTCCGACTAA

Coding sequence (CDS)

ATGACTGTGATCTTCCGGCGATGCCGTTGTTCGGCGGATCGGCATCTTCATTCTCTTCGCCTTCCTCGTTTCGCATCCACCGCTTCACTCCTTCACTCTCCGATCTCTCTGCTTTCTTCCAAATTTCGTGAACAAAACTCAACGCTTCGCTTCGATAGAGAGCCGCTGATTTCTCTCATAAAGTCATGCACCCACAAATCACAATTGCTGCAAATCCATGCCCACATGATCCGCACTTCTTTCATTCAAGACCCCATTGTTTCCCTCCGCTTCTTGACTCGCATCGTTTCCGCGCCTTTTCGCGAATTGGGCTATTCGCGAAGATTCTTCTCTCAGCTGACGAACCCATTTGTTTCTCATTACAATACGCTGTTGAGAGCCTACTCGTTGAGCCGTTCACCTCTGGAGGGATTGTACATGTACAGAGATATGGAGAGGCAAGGTGTTCATGCTGATCCTTTGTCTTCTTCCTTTGCCGTTAAGTCGTGTATAAGAATGCTTTCATTATTTAGTGGGATTCAGATTCACGCAAGGATCTTTAGAAATGGGCATCAATCGGATAGTCTTTTGCTCACCTCCATGATGGATTTGTATTCTCATTGTGGCAAACTTGAGGATGCATGCAAACTGTTCGATGAAATTCCTCAAAGAGATGTTGTTGCTTGGAACGTTTTGATTTCGTGTCTAACTCGAAATAAACGAACAAGGGATGCTTTGGGCGGGAGGATGATATTACAACAGAAACTGGATGACAGTTGCCTGTTGGATGGAAAGTTGGTGTCCGACTAA

Protein sequence

MTVIFRRCRCSADRHLHSLRLPRFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSHYNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVKSCIRMLSLFSGIQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALGGRMILQQKLDDSCLLDGKLVSD
Homology
[Close]
BLAST of Cp4.1LG18g08010 vs. ExPASy Swiss-Prot
Match: Q9SN85 (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 9.7e-48
Identity = 101/186 (54.30%), Postives = 133/186 (71.51%), Query Frame = 0 

Query: 56  LISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRI-VSAPFRELGYSRRFFSQLT 115
           L+SLI S T K  L QIHA ++RTS I++  V   FL+R+ +S   R++ YS R FSQ  
Sbjct: 14  LLSLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRL 73

Query: 116 NPFVSHYNTLLRAYSLSRSPLEGLYMYRDMER-QGVHADPLSSSFAVKSCIRMLSLFSGI 175
           NP +SH NT++RA+SLS++P EG  ++R + R   + A+PLSSSFA+K CI+   L  G+
Sbjct: 74  NPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGL 133

Query: 176 QIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNK 235
           QIH +IF +G  SDSLL+T++MDLYS C    DACK+FDEIP+RD V+WNVL SC  RNK
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNK 193

Query: 236 RTRDAL 240
           RTRD L
Sbjct: 194 RTRDVL 199

[Close]
BLAST of Cp4.1LG18g08010 vs. ExPASy Swiss-Prot
Match: Q9FX24 (Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H68 PE=2 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-25
Identity = 63/188 (33.51%), Postives = 99/188 (52.66%), Query Frame = 0 

Query: 58  SLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPF 117
           ++I+ C   SQ+ Q+ +H +     Q   +  R L R   +PF +L ++ + F  +  P 
Sbjct: 8   TMIQKCVSFSQIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQIFRYIPKPL 67

Query: 118 VSHYNTLLRAYSLSRSPLEGLYMYRDMERQG------VHADPLSSSFAVKSCIRMLSLFS 177
            + +N ++R ++ S  P      YR M +Q          D L+ SF +K+C R L   +
Sbjct: 68  TNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALCSSA 127

Query: 178 GIQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTR 237
             Q+H +I R G  +DSLL T+++D YS  G L  A KLFDE+P RDV +WN LI+ L  
Sbjct: 128 MDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVS 187

Query: 238 NKRTRDAL 240
             R  +A+
Sbjct: 188 GNRASEAM 195

[Close]
BLAST of Cp4.1LG18g08010 vs. ExPASy Swiss-Prot
Match: Q9ZQA1 (Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E44 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.3e-22
Identity = 58/188 (30.85%), Postives = 103/188 (54.79%), Query Frame = 0 

Query: 46  NSTLRFDREPLISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPF-RELG 105
           +S  +  +   +  +K C+    LLQIH   I  S +Q+    +  L R+ S    ++L 
Sbjct: 6   DSCFKSRKHQCLIFLKLCSSIKHLLQIHG-QIHLSSLQNDSFIISELVRVSSLSLAKDLA 65

Query: 106 YSRRFFSQLTNPFVSHYNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVKSCI 165
           ++R      ++   S +N L R YS S SP+E +++Y +M+R+G+  + L+  F +K+C 
Sbjct: 66  FARTLLLHSSDSTPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKACA 125

Query: 166 RMLSLFSGIQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNV 225
             L L +G QI   + ++G   D  +  +++ LY  C K  DA K+FDE+ +R+VV+WN 
Sbjct: 126 SFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNS 185

Query: 226 LISCLTRN 233
           +++ L  N
Sbjct: 186 IMTALVEN 192

[Close]
BLAST of Cp4.1LG18g08010 vs. ExPASy Swiss-Prot
Match: Q9FG16 (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H88 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-21
Identity = 59/186 (31.72%), Postives = 102/186 (54.84%), Query Frame = 0 

Query: 47  STLRFDREPLISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIV-----SAPFR 106
           +TLRF + P ++L++SC+  S L  IH  ++RT  I D  V+ R L   V     + P  
Sbjct: 7   NTLRF-KHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTN 66

Query: 107 ELGYSRRFFSQLTNPFVSHYNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVK 166
            LGY+   FSQ+ NP +  +N L+R +S    P +    Y  M +  +  D ++  F +K
Sbjct: 67  LLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIK 126

Query: 167 SCIRMLSLFSGIQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVA 226
           +   M  +  G Q H++I R G Q+D  +  S++ +Y++CG +  A ++F ++  RDVV+
Sbjct: 127 ASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVS 186

Query: 227 WNVLIS 228
           W  +++
Sbjct: 187 WTSMVA 191

[Close]
BLAST of Cp4.1LG18g08010 vs. ExPASy Swiss-Prot
Match: Q9MA95 (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-21
Identity = 55/187 (29.41%), Postives = 103/187 (55.08%), Query Frame = 0 

Query: 54  EPLISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAP-FRELGYSRRFFSQ 113
           +P++S +++C    +L Q+H  MI++S I++ I   R +    + P    L Y+R  F  
Sbjct: 7   KPILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFES 66

Query: 114 LTNPFVSHYNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVKSCIRMLSLFSG 173
           +  P V  +N+++R YS S +P + L  Y++M R+G   D  +  + +K+C  +  +  G
Sbjct: 67  IDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFG 126

Query: 174 IQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRN 233
             +H  + + G + +  + T ++ +Y  CG++    ++F++IPQ +VVAW  LIS    N
Sbjct: 127 SCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNN 186

Query: 234 KRTRDAL 240
            R  DA+
Sbjct: 187 NRFSDAI 193

[Close]
BLAST of Cp4.1LG18g08010 vs. NCBI nr
Match: XP_023515406.1 (pentatricopeptide repeat-containing protein At3g47530 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 477 bits (1227), Expect = 1.99e-163
Identity = 242/246 (98.37%), Postives = 243/246 (98.78%), Query Frame = 0 

Query: 1   MTVIFRRCRCSADRHLHSLRLPRFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLI 60
           MTVIFRRCRCSADRHLHSLRLPRFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLI
Sbjct: 1   MTVIFRRCRCSADRHLHSLRLPRFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLI 60

Query: 61  KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH 120
           KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH
Sbjct: 61  KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH 120

Query: 121 YNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVKSCIRMLSLFSGIQIHARIF 180
           YNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVKSCIRMLSLFSGIQIHARIF
Sbjct: 121 YNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVKSCIRMLSLFSGIQIHARIF 180

Query: 181 RNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG 240
           RNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG
Sbjct: 181 RNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG 240

Query: 241 GRMILQ 246
              I+Q
Sbjct: 241 LFEIMQ 246

[Close]
BLAST of Cp4.1LG18g08010 vs. NCBI nr
Match: KAG6589508.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023195.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 475 bits (1222), Expect = 1.13e-162
Identity = 240/246 (97.56%), Postives = 243/246 (98.78%), Query Frame = 0 

Query: 1   MTVIFRRCRCSADRHLHSLRLPRFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLI 60
           MTVIFRRCRCSADRHLHSLRLPRFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLI
Sbjct: 1   MTVIFRRCRCSADRHLHSLRLPRFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLI 60

Query: 61  KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH 120
           KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH
Sbjct: 61  KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH 120

Query: 121 YNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVKSCIRMLSLFSGIQIHARIF 180
           YNTLLRAYSLSRSPLEGLYMYRDMER+GVHADPLSSSFAVKSCIRMLSLFSG+QIHARIF
Sbjct: 121 YNTLLRAYSLSRSPLEGLYMYRDMERRGVHADPLSSSFAVKSCIRMLSLFSGVQIHARIF 180

Query: 181 RNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG 240
           RNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG
Sbjct: 181 RNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG 240

Query: 241 GRMILQ 246
              I+Q
Sbjct: 241 LFEIMQ 246

[Close]
BLAST of Cp4.1LG18g08010 vs. NCBI nr
Match: XP_022921651.1 (pentatricopeptide repeat-containing protein At3g47530 [Cucurbita moschata])

HSP 1 Score: 473 bits (1217), Expect = 6.48e-162
Identity = 239/246 (97.15%), Postives = 242/246 (98.37%), Query Frame = 0 

Query: 1   MTVIFRRCRCSADRHLHSLRLPRFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLI 60
           MTVIFRRCRCSADRHLHSLRLP FASTASLLHSPISLLSSKFREQNSTLRFDREPLISLI
Sbjct: 1   MTVIFRRCRCSADRHLHSLRLPHFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLI 60

Query: 61  KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH 120
           KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH
Sbjct: 61  KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH 120

Query: 121 YNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVKSCIRMLSLFSGIQIHARIF 180
           YNTLLRAYSLSRSPLEGLYMYRDMER+GVHADPLSSSFAVKSCIRMLSLFSG+QIHARIF
Sbjct: 121 YNTLLRAYSLSRSPLEGLYMYRDMERRGVHADPLSSSFAVKSCIRMLSLFSGVQIHARIF 180

Query: 181 RNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG 240
           RNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG
Sbjct: 181 RNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG 240

Query: 241 GRMILQ 246
              I+Q
Sbjct: 241 LFEIMQ 246

[Close]
BLAST of Cp4.1LG18g08010 vs. NCBI nr
Match: XP_022987181.1 (pentatricopeptide repeat-containing protein At3g47530 [Cucurbita maxima])

HSP 1 Score: 465 bits (1196), Expect = 9.77e-159
Identity = 236/246 (95.93%), Postives = 240/246 (97.56%), Query Frame = 0 

Query: 1   MTVIFRRCRCSADRHLHSLRLPRFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLI 60
           MTVIFRRCRCSA RH HSLRLPRFASTASLLHSPISLLSSKFR+QNSTL FDREPLISLI
Sbjct: 1   MTVIFRRCRCSAYRHPHSLRLPRFASTASLLHSPISLLSSKFRQQNSTLHFDREPLISLI 60

Query: 61  KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH 120
           KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH
Sbjct: 61  KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH 120

Query: 121 YNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVKSCIRMLSLFSGIQIHARIF 180
           YNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFA+KSCIRMLSLFSGIQIHARIF
Sbjct: 121 YNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFALKSCIRMLSLFSGIQIHARIF 180

Query: 181 RNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG 240
           RNGHQSDSLLLTSMMDLYSHCGKL+DACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG
Sbjct: 181 RNGHQSDSLLLTSMMDLYSHCGKLKDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG 240

Query: 241 GRMILQ 246
              I+Q
Sbjct: 241 LFEIMQ 246

[Close]
BLAST of Cp4.1LG18g08010 vs. NCBI nr
Match: XP_022135228.1 (pentatricopeptide repeat-containing protein At3g47530 [Momordica charantia])

HSP 1 Score: 382 bits (982), Expect = 2.32e-126
Identity = 192/235 (81.70%), Postives = 211/235 (89.79%), Query Frame = 0 

Query: 17  HSLRLPRFASTASLLHSPISLLSSKFREQNSTLRF-----DREPLISLIKSCTHKSQLLQ 76
           H + LPRFASTASLLHSP SL+SSKFR+ NST RF     +REPLISLIKSCTHK QLLQ
Sbjct: 18  HHISLPRFASTASLLHSPKSLISSKFRQHNSTTRFSNAPIEREPLISLIKSCTHKPQLLQ 77

Query: 77  IHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSHYNTLLRAYSLS 136
           IHAH+IRTS I+DPI++LRFLTR  +APFREL YSRRFFSQLTNP VSHYN +LRAYSLS
Sbjct: 78  IHAHIIRTSSIKDPIIALRFLTRAATAPFRELDYSRRFFSQLTNPSVSHYNAMLRAYSLS 137

Query: 137 RSPLEGLYMYRDMERQGVHADPLSSSFAVKSCIRMLSLFSGIQIHARIFRNGHQSDSLLL 196
           RSP +GLY+YRDMERQG+ ADPLSSSFA+KSCIR+ SL SG+QIHARIFRNGHQSDSLLL
Sbjct: 138 RSPQDGLYVYRDMERQGIRADPLSSSFAIKSCIRIFSLLSGVQIHARIFRNGHQSDSLLL 197

Query: 197 TSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALGGRMILQ 246
           T+MMDLYSHCGKLE+ACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG   I+Q
Sbjct: 198 TTMMDLYSHCGKLEEACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALGLFEIMQ 252

[Close]
BLAST of Cp4.1LG18g08010 vs. ExPASy TrEMBL
Match: A0A6J1E1Z3 (pentatricopeptide repeat-containing protein At3g47530 OS=Cucurbita moschata OX=3662 GN=LOC111429841 PE=3 SV=1)

HSP 1 Score: 473 bits (1217), Expect = 3.14e-162
Identity = 239/246 (97.15%), Postives = 242/246 (98.37%), Query Frame = 0 

Query: 1   MTVIFRRCRCSADRHLHSLRLPRFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLI 60
           MTVIFRRCRCSADRHLHSLRLP FASTASLLHSPISLLSSKFREQNSTLRFDREPLISLI
Sbjct: 1   MTVIFRRCRCSADRHLHSLRLPHFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLI 60

Query: 61  KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH 120
           KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH
Sbjct: 61  KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH 120

Query: 121 YNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVKSCIRMLSLFSGIQIHARIF 180
           YNTLLRAYSLSRSPLEGLYMYRDMER+GVHADPLSSSFAVKSCIRMLSLFSG+QIHARIF
Sbjct: 121 YNTLLRAYSLSRSPLEGLYMYRDMERRGVHADPLSSSFAVKSCIRMLSLFSGVQIHARIF 180

Query: 181 RNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG 240
           RNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG
Sbjct: 181 RNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG 240

Query: 241 GRMILQ 246
              I+Q
Sbjct: 241 LFEIMQ 246

[Close]
BLAST of Cp4.1LG18g08010 vs. ExPASy TrEMBL
Match: A0A6J1JDE8 (pentatricopeptide repeat-containing protein At3g47530 OS=Cucurbita maxima OX=3661 GN=LOC111484807 PE=3 SV=1)

HSP 1 Score: 465 bits (1196), Expect = 4.73e-159
Identity = 236/246 (95.93%), Postives = 240/246 (97.56%), Query Frame = 0 

Query: 1   MTVIFRRCRCSADRHLHSLRLPRFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLI 60
           MTVIFRRCRCSA RH HSLRLPRFASTASLLHSPISLLSSKFR+QNSTL FDREPLISLI
Sbjct: 1   MTVIFRRCRCSAYRHPHSLRLPRFASTASLLHSPISLLSSKFRQQNSTLHFDREPLISLI 60

Query: 61  KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH 120
           KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH
Sbjct: 61  KSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSH 120

Query: 121 YNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVKSCIRMLSLFSGIQIHARIF 180
           YNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFA+KSCIRMLSLFSGIQIHARIF
Sbjct: 121 YNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFALKSCIRMLSLFSGIQIHARIF 180

Query: 181 RNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG 240
           RNGHQSDSLLLTSMMDLYSHCGKL+DACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG
Sbjct: 181 RNGHQSDSLLLTSMMDLYSHCGKLKDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG 240

Query: 241 GRMILQ 246
              I+Q
Sbjct: 241 LFEIMQ 246

[Close]
BLAST of Cp4.1LG18g08010 vs. ExPASy TrEMBL
Match: A0A6J1C487 (pentatricopeptide repeat-containing protein At3g47530 OS=Momordica charantia OX=3673 GN=LOC111007242 PE=3 SV=1)

HSP 1 Score: 382 bits (982), Expect = 1.12e-126
Identity = 192/235 (81.70%), Postives = 211/235 (89.79%), Query Frame = 0 

Query: 17  HSLRLPRFASTASLLHSPISLLSSKFREQNSTLRF-----DREPLISLIKSCTHKSQLLQ 76
           H + LPRFASTASLLHSP SL+SSKFR+ NST RF     +REPLISLIKSCTHK QLLQ
Sbjct: 18  HHISLPRFASTASLLHSPKSLISSKFRQHNSTTRFSNAPIEREPLISLIKSCTHKPQLLQ 77

Query: 77  IHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSHYNTLLRAYSLS 136
           IHAH+IRTS I+DPI++LRFLTR  +APFREL YSRRFFSQLTNP VSHYN +LRAYSLS
Sbjct: 78  IHAHIIRTSSIKDPIIALRFLTRAATAPFRELDYSRRFFSQLTNPSVSHYNAMLRAYSLS 137

Query: 137 RSPLEGLYMYRDMERQGVHADPLSSSFAVKSCIRMLSLFSGIQIHARIFRNGHQSDSLLL 196
           RSP +GLY+YRDMERQG+ ADPLSSSFA+KSCIR+ SL SG+QIHARIFRNGHQSDSLLL
Sbjct: 138 RSPQDGLYVYRDMERQGIRADPLSSSFAIKSCIRIFSLLSGVQIHARIFRNGHQSDSLLL 197

Query: 197 TSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALGGRMILQ 246
           T+MMDLYSHCGKLE+ACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALG   I+Q
Sbjct: 198 TTMMDLYSHCGKLEEACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALGLFEIMQ 252

[Close]
BLAST of Cp4.1LG18g08010 vs. ExPASy TrEMBL
Match: A0A0A0LUH9 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G009750 PE=3 SV=1)

HSP 1 Score: 342 bits (877), Expect = 2.93e-111
Identity = 176/218 (80.73%), Postives = 191/218 (87.61%), Query Frame = 0 

Query: 30  LLHSPISLLSSKFREQN-STLRFDREPLISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVS 89
           +  SP S+LS K+   + S   F+REPLISLIKSCTHKSQLLQIHAH+I TS IQDPIVS
Sbjct: 4   IFRSP-SILSLKYHHHSISFSHFEREPLISLIKSCTHKSQLLQIHAHIITTSSIQDPIVS 63

Query: 90  LRFLTRIVSAPFRELGYSRRFFSQLTNPFVSHYNTLLRAYSLSRSPLEGLYMYRDMERQG 149
           LRFLTR  SAPFR+LGYSRR F  LTNPFVSHYN +LRAYSLSRSPLEGLYMYRDMERQG
Sbjct: 64  LRFLTRTASAPFRDLGYSRRLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQG 123

Query: 150 VHADPLSSSFAVKSCIRMLSLFSGIQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDAC 209
           V ADPLSSSFAVKSCI++LSL  GIQIHARIF NGHQ+DSLLLTSMMDLYSHCGK E+AC
Sbjct: 124 VRADPLSSSFAVKSCIKLLSLLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEAC 183

Query: 210 KLFDEIPQRDVVAWNVLISCLTRNKRTRDALGGRMILQ 246
           KLFDE+PQ+DVVAWNVLISCLTRNKRTRDALG   I+Q
Sbjct: 184 KLFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQ 220

[Close]
BLAST of Cp4.1LG18g08010 vs. ExPASy TrEMBL
Match: A0A1S3BV40 (pentatricopeptide repeat-containing protein At3g47530 OS=Cucumis melo OX=3656 GN=LOC103493993 PE=3 SV=1)

HSP 1 Score: 322 bits (826), Expect = 8.38e-104
Identity = 162/191 (84.82%), Postives = 174/191 (91.10%), Query Frame = 0 

Query: 56  LISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTN 115
           LISLIKSCTHKSQLLQIHAH+IRTS IQDPIVSLRFLTR  SAPFR+LGYSRRF   LTN
Sbjct: 13  LISLIKSCTHKSQLLQIHAHIIRTSSIQDPIVSLRFLTRTASAPFRDLGYSRRFLDLLTN 72

Query: 116 PFVSHYNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVKSCIRMLSLFSGIQI 175
           P VSHYN +LRAYS+SRSPLEGLY+YRDMERQGV ADPLSSSFAVKSCI++LSL  GIQI
Sbjct: 73  PLVSHYNAMLRAYSVSRSPLEGLYVYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGIQI 132

Query: 176 HARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRT 235
           HARIF  GHQ+DSLLLTSMMDLYSHCGK E+ACKLFDE+PQ+DVVAWNVLISCLTRNKRT
Sbjct: 133 HARIFIYGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRT 192

Query: 236 RDALGGRMILQ 246
           RDALG   I+Q
Sbjct: 193 RDALGLFEIMQ 203

[Close]
BLAST of Cp4.1LG18g08010 vs. TAIR 10
Match: AT3G47530.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 191.8 bits (486), Expect = 6.9e-49
Identity = 101/186 (54.30%), Postives = 133/186 (71.51%), Query Frame = 0 

Query: 56  LISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRI-VSAPFRELGYSRRFFSQLT 115
           L+SLI S T K  L QIHA ++RTS I++  V   FL+R+ +S   R++ YS R FSQ  
Sbjct: 14  LLSLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRL 73

Query: 116 NPFVSHYNTLLRAYSLSRSPLEGLYMYRDMER-QGVHADPLSSSFAVKSCIRMLSLFSGI 175
           NP +SH NT++RA+SLS++P EG  ++R + R   + A+PLSSSFA+K CI+   L  G+
Sbjct: 74  NPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGL 133

Query: 176 QIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNK 235
           QIH +IF +G  SDSLL+T++MDLYS C    DACK+FDEIP+RD V+WNVL SC  RNK
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNK 193

Query: 236 RTRDAL 240
           RTRD L
Sbjct: 194 RTRDVL 199

[Close]
BLAST of Cp4.1LG18g08010 vs. TAIR 10
Match: AT1G34160.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-26
Identity = 63/188 (33.51%), Postives = 99/188 (52.66%), Query Frame = 0 

Query: 58  SLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPF 117
           ++I+ C   SQ+ Q+ +H +     Q   +  R L R   +PF +L ++ + F  +  P 
Sbjct: 8   TMIQKCVSFSQIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQIFRYIPKPL 67

Query: 118 VSHYNTLLRAYSLSRSPLEGLYMYRDMERQG------VHADPLSSSFAVKSCIRMLSLFS 177
            + +N ++R ++ S  P      YR M +Q          D L+ SF +K+C R L   +
Sbjct: 68  TNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALCSSA 127

Query: 178 GIQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTR 237
             Q+H +I R G  +DSLL T+++D YS  G L  A KLFDE+P RDV +WN LI+ L  
Sbjct: 128 MDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVS 187

Query: 238 NKRTRDAL 240
             R  +A+
Sbjct: 188 GNRASEAM 195

[Close]
BLAST of Cp4.1LG18g08010 vs. TAIR 10
Match: AT2G36730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 3.8e-23
Identity = 58/188 (30.85%), Postives = 103/188 (54.79%), Query Frame = 0 

Query: 46  NSTLRFDREPLISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPF-RELG 105
           +S  +  +   +  +K C+    LLQIH   I  S +Q+    +  L R+ S    ++L 
Sbjct: 6   DSCFKSRKHQCLIFLKLCSSIKHLLQIHG-QIHLSSLQNDSFIISELVRVSSLSLAKDLA 65

Query: 106 YSRRFFSQLTNPFVSHYNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVKSCI 165
           ++R      ++   S +N L R YS S SP+E +++Y +M+R+G+  + L+  F +K+C 
Sbjct: 66  FARTLLLHSSDSTPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKACA 125

Query: 166 RMLSLFSGIQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNV 225
             L L +G QI   + ++G   D  +  +++ LY  C K  DA K+FDE+ +R+VV+WN 
Sbjct: 126 SFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNS 185

Query: 226 LISCLTRN 233
           +++ L  N
Sbjct: 186 IMTALVEN 192

[Close]
BLAST of Cp4.1LG18g08010 vs. TAIR 10
Match: AT5G06540.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-23
Identity = 59/186 (31.72%), Postives = 102/186 (54.84%), Query Frame = 0 

Query: 47  STLRFDREPLISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIV-----SAPFR 106
           +TLRF + P ++L++SC+  S L  IH  ++RT  I D  V+ R L   V     + P  
Sbjct: 7   NTLRF-KHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTN 66

Query: 107 ELGYSRRFFSQLTNPFVSHYNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVK 166
            LGY+   FSQ+ NP +  +N L+R +S    P +    Y  M +  +  D ++  F +K
Sbjct: 67  LLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIK 126

Query: 167 SCIRMLSLFSGIQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVA 226
           +   M  +  G Q H++I R G Q+D  +  S++ +Y++CG +  A ++F ++  RDVV+
Sbjct: 127 ASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVS 186

Query: 227 WNVLIS 228
           W  +++
Sbjct: 187 WTSMVA 191

[Close]
BLAST of Cp4.1LG18g08010 vs. TAIR 10
Match: AT3G05240.1 (mitochondrial editing factor 19 )

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-22
Identity = 55/187 (29.41%), Postives = 103/187 (55.08%), Query Frame = 0 

Query: 54  EPLISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAP-FRELGYSRRFFSQ 113
           +P++S +++C    +L Q+H  MI++S I++ I   R +    + P    L Y+R  F  
Sbjct: 7   KPILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFES 66

Query: 114 LTNPFVSHYNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFAVKSCIRMLSLFSG 173
           +  P V  +N+++R YS S +P + L  Y++M R+G   D  +  + +K+C  +  +  G
Sbjct: 67  IDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFG 126

Query: 174 IQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRN 233
             +H  + + G + +  + T ++ +Y  CG++    ++F++IPQ +VVAW  LIS    N
Sbjct: 127 SCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNN 186

Query: 234 KRTRDAL 240
            R  DA+
Sbjct: 187 NRFSDAI 193

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g08010 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SN859.7e-4854.30Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana OX... [more]
Q9FX241.8e-2533.51Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana OX... [more]
Q9ZQA15.3e-2230.85Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana OX... [more]
Q9FG161.2e-2131.72Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX... [more]
Q9MA951.6e-2129.41Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th... [more]
BLAST of Cp4.1LG18g08010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023515406.11.99e-16398.37pentatricopeptide repeat-containing protein At3g47530 [Cucurbita pepo subsp. pep... [more]
KAG6589508.11.13e-16297.56Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022921651.16.48e-16297.15pentatricopeptide repeat-containing protein At3g47530 [Cucurbita moschata][more]
XP_022987181.19.77e-15995.93pentatricopeptide repeat-containing protein At3g47530 [Cucurbita maxima][more]
XP_022135228.12.32e-12681.70pentatricopeptide repeat-containing protein At3g47530 [Momordica charantia][more]
BLAST of Cp4.1LG18g08010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E1Z33.14e-16297.15pentatricopeptide repeat-containing protein At3g47530 OS=Cucurbita moschata OX=3... [more]
A0A6J1JDE84.73e-15995.93pentatricopeptide repeat-containing protein At3g47530 OS=Cucurbita maxima OX=366... [more]
A0A6J1C4871.12e-12681.70pentatricopeptide repeat-containing protein At3g47530 OS=Momordica charantia OX=... [more]
A0A0A0LUH92.93e-11180.73DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G0097... [more]
A0A1S3BV408.38e-10484.82pentatricopeptide repeat-containing protein At3g47530 OS=Cucumis melo OX=3656 GN... [more]
BLAST of Cp4.1LG18g08010 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G47530.16.9e-4954.30Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G34160.11.3e-2633.51Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G36730.13.8e-2330.85Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G06540.18.5e-2331.72Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G05240.11.1e-2229.41mitochondrial editing factor 19 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 121..152
e-value: 6.0E-6
score: 24.1
coord: 192..220
e-value: 3.9E-4
score: 18.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 120..149
e-value: 0.0013
score: 18.9
coord: 192..218
e-value: 6.5E-5
score: 22.9
coord: 220..239
e-value: 0.062
score: 13.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 187..221
score: 9.624079
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 117..151
score: 8.53891
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 136..241
e-value: 3.2E-17
score: 64.9
NoneNo IPR availablePANTHERPTHR47928:SF63OS08G0434000 PROTEINcoord: 48..240
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 48..240

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g08010.1Cp4.1LG18g08010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1900865 chloroplast RNA modification
cellular_component GO:0009507 chloroplast
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding