Cp4.1LG18g06710 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g06710
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptiontRNA pseudouridine synthase
LocationCp4.1LG18: 6711678 .. 6717506 (-)
RNA-Seq ExpressionCp4.1LG18g06710
SyntenyCp4.1LG18g06710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGCCATTTTTCATCTGCTTGACTGCATCATCTACGTGGATTTACAGTCTCGTCCCTGCTGCGACGGCGGCTGCAACTGCAAAATACAGTGTCCGCTCAGGCAGGGCGAGCGATGGTTATGATACCAGAACCGAGGACTGGACTTTCGGTTTGGATTTAAGGATTCTGATGGAGAATCGAGCTCAGCAAAAGGACTATCTTCACTATAACCACACTGATCGCTGCAGAAATGGGAGATGGACTGCCAGGTTTTTGTTTCGTACATTTTCATTATATATTGCTTTATTGATTTTAGGTTTTAATCTCTTGAATGAGCTTCGTACTTGTTTGTTTTTGTTTTTGTTTTTCAATCTGAATCTGAGAAGGTAGTTAATCAAGCTGTTGTTATGCTATTACCTGGCGAAGCTACCAATTCATGTATGGAAGTCCGTGGCAAGAAGTGCTTGATTCTTACTTTCATGCTGTTAATGGAAGGTTCTCACTGTCCTCGTTGTTTGGAACTGAGGCGAGTCTCCAATATCAATGTTTTCTGTAAACTTCGTTCCTCTTTCTCTATAGTTCTTCCTTCTCTTGAAATGGAAGCAATGGAATCGTCTAGGTCTCCCTTTCTCTCCTTTGCGAGCACATGGATGCCTCTCTCTTGTAGTGCTAAAGATCAATATTTATATATCTTAAGCTGCTTTCGTCAAAATATTGTAATTGGATAGTTTTTCACCATCTCTCGATGTTGACATCTATGATTGCTTTCTTTTGCTTCATGCAATGCAATCCCAAGAAAAGTTGAAAACAATTTTGAATCCTTTTCCTGCATCCTAAAATTGTAGGGAAAATAGCAAGAATAATGTATTTGTTGTAGGACTTCCTATATCCTGAAGGAATCGTATTTCTTTTTCTGCTGGTTCTCTCGTTCTTAAAATGATGGCTGCCATCTAAGACCGGCGATTGCTTTAACTGTGTATGTTCTAAATTTTGCTTCAATTCTCAGATCTGGAGATGGTTTCTAATATGATCCTTGCTATCAATTGTTACATTTGATTTGTTGATCACGTTCATGTTCTTTAAATAATGTTGTTTTAATTTCATTGGTTGATTACAATAAGGAGAAATGGGAAGGAAAATTTTGTACTTTGTTATCTTGTAAAAAACAAGAAGATATCATTGATTTCTTTTTAGTTATTGTACACAGTTCTCATCTACAGATAGGTCATGATCATTAATGATGCCGAGACTCCATTGATTTACTACATAGCAGAGTTAAACAGAGCTTCAGTTAAAGATGGGACTTGGAGGTGGGCTAGGGCAACATTTAAGATTGTTCTTTCCTTCCATGAGGTTTCTTTTTATGGGTGGCAAAAGCAGCCAGGCTTGAATACTGTTCAGGGGTAAGCTTATTTTAGGAAATTTACCATATGCAAGTACTATCGTATGAAATTGGGAGCTTTTGAAACTGAATGATTGTTAAGAACTTGTAATTTTTAGAAAACGTTTGAGAAGTTGGTTCTAGAGATACAATTGAAAATCATATGGCCTCCATACAAAGTGAAACTTTCGTCTTGAGGACAATGTCCAAATTAAGTCGATCAACCTTGTTAATCTAACCTTTCTGGTACTGTATCTTCTCTTCCATTATGTGGTTTAAAGTAATATTTTAATATCTTTAGATGTATAAACAGTTTGATTTCAATCTAGAGACAGCAAACGCTGTTCTATTCGATACGGGTAGGAAAAGAACCCAACTCGGTGCTTTTATATTGGAAGGTTATGTTTACTTGTATCCTTTGGCAGCTTGGTATAAAGATCTCTAGGGAAGTTTGTAGATGAGAAGAAAGCTCAGCTGCTGAAAGATAGATGCTTACCAACAGTAGGATGTGCTGTGGGTTGCTTGCTGGGCGCACTGACAAAGGGGTGACAGCTCTGCGACACGGTTTATTCTGTATGTCGGCTTCTTAATCTCTGTTGACATGAATTTTTGCTTGGATATTGAATTTCATTACTCTTCCTTGATTTTCTTAGATTCTATCTCAGCTTAAAAATGAACTCATATGTTAGAATAAATTTTATCTTATATATTATTTATTGACATCTTTAATAGTTGTGATGAATAGACATGACTTGATTGTCATATCCGTTTTCTGAAATCCACTTTTGTTGTGCTTCACTAAAACACCCAAATAGTCAAATAGGTGACTTTGTCCCGACTGCTCTATGCCCAAAGTGTTGGAAGGGTATGTCAAATAACTTGTGAGAATGATGAGGACCTTGTGTCGGCTGATAAGCCTCAAACGTTTAGTGTAAGGAGGGTCAACCAACTACTTAGGAAACGAGAAGGAAAGTTATTGTCGTACAAGATGTTTGCACGTGTCACCAAAGCATCATGAAATGAGTGAGAATCATGAATTTTACCAATTATTTGCTCCTTTTTTGGAAGTTATTCTAGCTTCTAGTTTAAGTATCATAATTCTTTTTCTTCTTGGTTTAATTCTATTTATTGCTTTCTTCTCATAAAGACATTTCTTCTTATTCTGTTTTTGTTTTAATTCTATTGAGCCAATATGAAGTTTATGTTGCATTATAGGAATTATTGTAATGGAGGTTGGAGTTCTGATTCAAACTATATTCAGCCAATTAGTGTACTATTGACAGGACCAAGGAGTAGGAAGATGTGTTTATGTGTGTTGAGCTGTTTGATTGCTAATTGCTTCTTGCAGAAGGTATCGTCTCTGGGGTTGGCTATGCTGAAGACTATGTTGTACCGAACGTAAAATTGGTCTAATTAGATTTGGGTTATCCGTTCTCCAACTGCTTAAAATGGAGGGTTAACATCTTATACATCGGCAAGGGAATCTCCCTTCCGTTTGAGCAAATGGGGATACAACCGTTAGGCCGTAAATGGCTCTTTCACGTTTACATGACACTAATTATTATGTCTTCTGTGGAATCCTTGTCCTTCAGCAGTTCAGCCAATTATAATGGAACGTAATGTAAGGATGACCTTGCAGATGGTACGGGTGCTTGTTGCGACAGCAATTAGAGAGGCAGTTGCTGGTGCTTGAGAGGATGCGTTAATACGGCTGATTGGTGCCACATGTCGACGTGCCACTGTGTGCCACATGTCGACGTGCCACTGTGTGCCACATGTCGACGTGCCACTGTACCTCCGGCGCCTCCCGATGGCCTCAGTCTTTTTGATGTAGGTAGGTTATACTGAATTTGATTCACAAAATTGCTTCACTTTAAATGACTGCTTTTTCCTTTTCCCGATCAAAGTTGCATGGGCTACTACCAACCCTTTTTGATTGGCGGTGTTATTATTACCAAAGTTCTACAACCTTAGAGTTAATGATTGAATTGTGTTAAGAGATATGTCTACTCGGGTTGTGAAAGTTGGTATGCATTTTATCACATATCACTCCAGGTGTTTGTATTTGTCTCAGGTGGAGGCTAGTTTTTGGTTAGATCAACTGTTTCAGAGGGATGGGCCAGAGATTCAAGCCTCTAGCGTTTCAGGGAAGTTACTCATACTTCATCCATTTGAGCTATATTCAAATCTTGTTTCCATCTATTTGATTGAGGAAGTAAACTATCTGACTAATTTACTTCATATCCAATTCCCAACTGGAGAGCACAAATGAATTGTTTAGCGAAGCTGTTTTAATGGTACAACTCTATGCCTTCACTGCTATAATCTATGCATGTGTGCTTACTTTACTGCTGTCTAGGATTATACTTTTCTTTTTGAAGTAGTACTCATGAGTTTAGAGATTTCCACCCAGGAGAGAATTACCATTAATGAATCGAACTTCCTAAGCATTGTTGAGCCAAAGGAAACACAATAATTTCCCATTCTACGTTCAAAACCTATTCTATTCATCGAAAAGCCCCAGCTCCACTGTATCTTCATCTTCAACCTCACATCCTTCTGCTAGAATTAGCAGGCGAGTTGTATCGTCTTCTCATGAGGTATCTGCTGTTGCTTTATAAGCCTTTTTAACTCAAGCTCCAACTCACATGGTAAAATTGAGTTCATCAGATAACCCTCTTGAAGATCTAACATCAGATTCACTGGCGTATGAAGAATAGAAATCTTCATCCCCATCTTTTTCTTTCAACTCCTCAATCTTCTCCACAACCTCTCTCAAATCCAGCCTCTTTTCAAAGTCGCTCTCGCAACATGCTAATGCAATCCTCAGAAGCTTCATCATTTCACCCTCGCTGCTCTTGGTTGGCCCCATGTTCTTATCAAATACTTGGCTATTCCATTCTGTCGCAGGAATGGATTTGACCCAACTTGCCAAATCTTCCTCGTCCCCACCCTTGCCCTGATGCAGAAAGTTGGCTACGAGTTTCCCTGTTAGAATCTCTAGGATCAACAGCCCAAAGCTCCACACATCTGTTTTCTTTGTGATGCGACCTTGTTGGTTGTACTCCGGGGATCTGTAGGCCACCATTAGATCTTGGGCGTGCTCTTGGTTGATAACTGGGATCAGGCCATAGTCCGAAAGAAGGGGCTCATAGTTGGCATTGAGAAGCACATTTGAGGACTTGAGATGGCCATGTGGGGTTATGAGACTTGGAAGCTCACTGTAGAGATAGCGAAGACCCTTTGCAATGCCCTTGATGATCTTCAACCTTGCAGACCAATCGAGGGCTGGTTGCCCCTCGGCTTTTTGCCCTAAAAGACACAGACAAGAGAATCCAATTGAGCCAAAATTTGAAGTATTTTCTGTTGACTACGAAACTCTTGAGTTAAACTAACAGGTTAAGGTATATTTAACGCTCCCCTCACTCGCGAACTTCATACAAGTTCAAACACTAAACCTTCTTCTACTCTAACATCATGTTAAGTTGATGATTTATGGTATTTCTAATCTTTTGTGCACATTCTTAACATGTTCCTTCACTTGTGTTCTATTGGAACTTAACTAGAAGACCTTTTGTTTTGATATTATGACAACGTACCAATAAACTCGAAAGTATAAGTTGATACATTTAATCTTTTTATAAATATTTTTAACCAATTTTAGTAAGGTATAAGAAGAAGAAAAGGGGAATGTACCATGAAGTTGAATAACCAAGCTACCCTTCTCAACAAAGTTTGTTATGAGAAGCTTTTCTTCCTTTTTGTAGAAGTAGGCTACGAGAGGAAGCAAGTTGGGGTGTTTCAATCTTCCAATTCTCTTCATATGTTCTTGGAATTCATCTTTATCCACATTGTTCATTTGCTTAAACCTCTTCACAACCACCACAGGTCCGCCGGTCATGGCTGCCTTGTAAGAAGAACCGAAGCACCCACTTCCTAGGATCTCTGCAGAGGCTTTAAGCAAGTCTGATAAATCAAACTTCTCCAAGTCCTCTCTTACAAATGATAACTTAGCACCCTCGGCCACCCGTCTACCCGATCCATGACTGGAGGCACGGTCCGGTGACTTTGCCCCGACCCCTGGATCTAACGCTCTAGCACCTGGAGATTTGCCGTTGGCTGGAACCTCTTCACAAGAAGATGATTGGTTCCGACGGCTAAGGATTACTATTCCTGCACCGATGGCAAGCAAAGCTTGTGTGAGAGCTATTGAAACCATGATGATGCTCGCGACTGATGGCATATTTGCGGTATTGCATGGTTTATTAAGTGGCGGTCCACATAAGCCTTCAATGCCTGCATATAGGAGAATTAGGTTCTTAGAAAAATAATACATTTAAGGAAACGGACAGATGTGTTCATATTGGAAAGTGCATGAAGTTGTTTGATTATATCTGCGATTTAGAAGTGGTGGTATAAATGATTTCTGAAAAGTGGAGAGATGATGAACACCTGAAAAGGAGGATGG

mRNA sequence

CTTGCCATTTTTCATCTGCTTGACTGCATCATCTACGTGGATTTACAGTCTCGTCCCTGCTGCGACGGCGGCTGCAACTGCAAAATACAGTGTCCGCTCAGGCAGGGCGAGCGATGGTTATGATACCAGAACCGAGGACTGGACTTTCGGTTTGGATTTAAGGATTCTGATGGAGAATCGAGCTCAGCAAAAGGACTATCTTCACTATAACCACACTGATCGCTGCAGAAATGGGAGATGGACTGCCAGGTAGTTAATCAAGCTGTTGTTATGCTATTACCTGGCGAAGCTACCAATTCATGTATGGAAGTCCGTGGCAAGAAGTGCTTGATTCTTACTTTCATGCTGTTAATGGAAGGTTCTCACTGTCCTCGTTGTTTGGAACTGAGATAGGTCATGATCATTAATGATGCCGAGACTCCATTGATTTACTACATAGCAGAGTTAAACAGAGCTTCAGTTAAAGATGGGACTTGGAGGTGGGCTAGGGCAACATTTAAGATTGTTCTTTCCTTCCATGAGGTTTCTTTTTATGGGTGGCAAAAGCAGCCAGGCTTGAATACTGTTCAGGGGATGTGCTGTGGGTTGCTTGCTGGGCGCACTGACAAAGGGGTGACAGCTCTGCGACACGGTTTATTCTAAGGTATCGTCTCTGGGGTTGGCTATGCTGAAGACTATGTTGTACCGAACATGGTACGGGTGCTTGTTGCGACAGCAATTAGAGAGGCAGTTGCTGGTGCTTGAGAGGATGCGTTAATACGGCTGATTGGTGCCACATGTCGACGTGCCACTGTGTGCCACATGTCGACGTGCCACTGTGTGCCACATGTCGACGTGCCACTGTACCTCCGGCGCCTCCCGATGGCCTCAGTCTTTTTGATGTAGGTGGAGGCTAGTTTTTGGTTAGATCAACTGTTTCAGAGGGATGGGCCAGAGATTCAAGCCTCTAGCGTTTCAGGGAAGTTACTCATACTTCATCCATTTGAGCTATATTCAAATCTTGTTTCCATCTATTTGATTGAGGAAGTAAACTATCTGACTAATTTACTTCATATCCAATTCCCAACTGGAGAGCACAAATGAATTGTTTAGCGAAGCTGTTTTAATGGTACAACTCTATGCCTTCACTGCTATAATCTATGCATGTGTGCTTACTTTACTGCTGTCTAGGATTATACTTTTCTTTTTGAAGTAGTACTCATGAGTTTAGAGATTTCCACCCAGGAGAGAATTACCATTAATGAATCGAACTTCCTAAGCATTGTTGAGCCAAAGGAAACACAATAATTTCCCATTCTACGTTCAAAACCTATTCTATTCATCGAAAAGCCCCAGCTCCACTGTATCTTCATCTTCAACCTCACATCCTTCTGCTAGAATTAGCAGGCGAGTTGTATCGTCTTCTCATGAGGTATCTGCTGTTGCTTTATAAGCCTTTTTAACTCAAGCTCCAACTCACATGGTAAAATTGAGTTCATCAGATAACCCTCTTGAAGATCTAACATCAGATTCACTGGCGTATGAAGAATAGAAATCTTCATCCCCATCTTTTTCTTTCAACTCCTCAATCTTCTCCACAACCTCTCTCAAATCCAGCCTCTTTTCAAAGTCGCTCTCGCAACATGCTAATGCAATCCTCAGAAGCTTCATCATTTCACCCTCGCTGCTCTTGGTTGGCCCCATGTTCTTATCAAATACTTGGCTATTCCATTCTGTCGCAGGAATGGATTTGACCCAACTTGCCAAATCTTCCTCGTCCCCACCCTTGCCCTGATGCAGAAAGTTGGCTACGAGTTTCCCTGTTAGAATCTCTAGGATCAACAGCCCAAAGCTCCACACATCTGTTTTCTTTGTGATGCGACCTTGTTGGTTGTACTCCGGGGATCTGTAGGCCACCATTAGATCTTGGGCGTGCTCTTGGTTGATAACTGGGATCAGGCCATAGTCCGAAAGAAGGGGCTCATAGTTGGCATTGAGAAGCACATTTGAGGACTTGAGATGGCCATGTGGGGTTATGAGACTTGGAAGCTCACTGTAGAGATAGCGAAGACCCTTTGCAATGCCCTTGATGATCTTCAACCTTGCAGACCAATCGAGGGCTGGTTGCCCCTCGGCTTTTTGCCCTAAAAGACACAGACAAGAGAATCCAATTGAGCCAAAATTTGAAGTATTTTCTGTTGACTACGAAACTCTTGAGTTAAACTAACAGGTTAAGGTATATTTAACGCTCCCCTCACTCGCGAACTTCATACAAGTTCAAACACTAAACCTTCTTCTACTCTAACATCATGTTAAGTTGATGATTTATGGTATTTCTAATCTTTTGTGCACATTCTTAACATGTTCCTTCACTTGTGTTCTATTGGAACTTAACTAGAAGACCTTTTGTTTTGATATTATGACAACGTACCAATAAACTCGAAAGTATAAGTTGATACATTTAATCTTTTTATAAATATTTTTAACCAATTTTAGTAAGGTATAAGAAGAAGAAAAGGGGAATGTACCATGAAGTTGAATAACCAAGCTACCCTTCTCAACAAAGTTTGTTATGAGAAGCTTTTCTTCCTTTTTGTAGAAGTAGGCTACGAGAGGAAGCAAGTTGGGGTGTTTCAATCTTCCAATTCTCTTCATATGTTCTTGGAATTCATCTTTATCCACATTGTTCATTTGCTTAAACCTCTTCACAACCACCACAGGTCCGCCGGTCATGGCTGCCTTGTAAGAAGAACCGAAGCACCCACTTCCTAGGATCTCTGCAGAGGCTTTAAGCAAGTCTGATAAATCAAACTTCTCCAAGTCCTCTCTTACAAATGATAACTTAGCACCCTCGGCCACCCGTCTACCCGATCCATGACTGGAGGCACGGTCCGGTGACTTTGCCCCGACCCCTGGATCTAACGCTCTAGCACCTGGAGATTTGCCGTTGGCTGGAACCTCTTCACAAGAAGATGATTGGTTCCGACGGCTAAGGATTACTATTCCTGCACCGATGGCAAGCAAAGCTTGTGTGAGAGCTATTGAAACCATGATGATGCTCGCGACTGATGGCATATTTGCGGTATTGCATGGTTTATTAAGTGGCGGTCCACATAAGCCTTCAATGCCTGCATATAGGAGAATTAGGTTCTTAGAAAAATAATACATTTAAGGAAACGGACAGATGTGTTCATATTGGAAAGTGCATGAAGTTGTTTGATTATATCTGCGATTTAGAAGTGGTGGTATAAATGATTTCTGAAAAGTGGAGAGATGATGAACACCTGAAAAGGAGGATGG

Coding sequence (CDS)

ATGATCATTAATGATGCCGAGACTCCATTGATTTACTACATAGCAGAGTTAAACAGAGCTTCAGTTAAAGATGGGACTTGGAGGTGGGCTAGGGCAACATTTAAGATTGTTCTTTCCTTCCATGAGGTTTCTTTTTATGGGTGGCAAAAGCAGCCAGGCTTGAATACTGTTCAGGGGATGTGCTGTGGGTTGCTTGCTGGGCGCACTGACAAAGGGGTGACAGCTCTGCGACACGGTTTATTCTAA

Protein sequence

MIINDAETPLIYYIAELNRASVKDGTWRWARATFKIVLSFHEVSFYGWQKQPGLNTVQGMCCGLLAGRTDKGVTALRHGLF
Homology
[Close]
BLAST of Cp4.1LG18g06710 vs. NCBI nr
Match: KAG7023337.1 (hypothetical protein SDJN02_14362, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115 bits (289), Expect = 2.40e-31
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1  MIINDAETPLIYYIAELNRASVKDGTWRWARATFKIVLSFHEVSFYGWQKQPGLNT 56
          MIINDAETPLIYYIAELNRASVKDGT RWARATFKIVLSFHEVSFYGWQKQPGLNT
Sbjct: 6  MIINDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT 61

[Close]
BLAST of Cp4.1LG18g06710 vs. NCBI nr
Match: XP_022135240.1 (uncharacterized protein LOC111007251 isoform X2 [Momordica charantia])

HSP 1 Score: 108 bits (270), Expect = 6.51e-26
Identity = 59/100 (59.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 4   NDAETPLIYYIAELNRASVKDGTWRWARATFKIVLSFHEVSFYGWQKQPGLNTVQGMC-- 63
           NDAE PLIY  +ELNRASVKD T RWARATFKIVLS+H  SF GWQKQPGLNTVQG+   
Sbjct: 90  NDAEIPLIYNTSELNRASVKDKTGRWARATFKIVLSYHGNSFDGWQKQPGLNTVQGLVEK 149

Query: 64  -----------------------CGLLAGRTDKGVTALRH 78
                                  C ++AGRTDKGVTALR 
Sbjct: 150 SLGKFVDEKKAQLLKDRCLPLEGCAVVAGRTDKGVTALRQ 189

[Close]
BLAST of Cp4.1LG18g06710 vs. NCBI nr
Match: XP_022135239.1 (uncharacterized protein LOC111007251 isoform X1 [Momordica charantia])

HSP 1 Score: 108 bits (270), Expect = 1.22e-25
Identity = 59/100 (59.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 4   NDAETPLIYYIAELNRASVKDGTWRWARATFKIVLSFHEVSFYGWQKQPGLNTVQGMC-- 63
           NDAE PLIY  +ELNRASVKD T RWARATFKIVLS+H  SF GWQKQPGLNTVQG+   
Sbjct: 90  NDAEIPLIYNTSELNRASVKDKTGRWARATFKIVLSYHGNSFDGWQKQPGLNTVQGLVEK 149

Query: 64  -----------------------CGLLAGRTDKGVTALRH 78
                                  C ++AGRTDKGVTALR 
Sbjct: 150 SLGKFVDEKKAQLLKDRCLPLEGCAVVAGRTDKGVTALRQ 189

[Close]
BLAST of Cp4.1LG18g06710 vs. NCBI nr
Match: TYK28521.1 (tRNA pseudouridine synthase A [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (265), Expect = 1.86e-25
Identity = 58/100 (58.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 4   NDAETPLIYYIAELNRASVKDGTWRWARATFKIVLSFHEVSFYGWQKQPGLNTVQGMC-- 63
           +DAETPLIY  AELNRA+VKD T RWARA FKIVLS+H  SF GWQKQPGLNTVQG+   
Sbjct: 90  DDAETPLIYNSAELNRAAVKDKTGRWARANFKIVLSYHGNSFDGWQKQPGLNTVQGLVER 149

Query: 64  -----------------------CGLLAGRTDKGVTALRH 78
                                  C ++AGRTDKGVTALR 
Sbjct: 150 SLGKFVDEKKAQMLKDKCLPLEGCAVVAGRTDKGVTALRQ 189

[Close]
BLAST of Cp4.1LG18g06710 vs. NCBI nr
Match: XP_008453520.1 (PREDICTED: tRNA pseudouridine synthase A [Cucumis melo] >KAA0058161.1 tRNA pseudouridine synthase A [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (265), Expect = 6.31e-25
Identity = 58/100 (58.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 4   NDAETPLIYYIAELNRASVKDGTWRWARATFKIVLSFHEVSFYGWQKQPGLNTVQGMC-- 63
           +DAETPLIY  AELNRA+VKD T RWARA FKIVLS+H  SF GWQKQPGLNTVQG+   
Sbjct: 90  DDAETPLIYNSAELNRAAVKDKTGRWARANFKIVLSYHGNSFDGWQKQPGLNTVQGLVER 149

Query: 64  -----------------------CGLLAGRTDKGVTALRH 78
                                  C ++AGRTDKGVTALR 
Sbjct: 150 SLGKFVDEKKAQMLKDKCLPLEGCAVVAGRTDKGVTALRQ 189

[Close]
BLAST of Cp4.1LG18g06710 vs. ExPASy TrEMBL
Match: A0A6J1C0L5 (uncharacterized protein LOC111007251 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007251 PE=4 SV=1)

HSP 1 Score: 108 bits (270), Expect = 3.15e-26
Identity = 59/100 (59.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 4   NDAETPLIYYIAELNRASVKDGTWRWARATFKIVLSFHEVSFYGWQKQPGLNTVQGMC-- 63
           NDAE PLIY  +ELNRASVKD T RWARATFKIVLS+H  SF GWQKQPGLNTVQG+   
Sbjct: 90  NDAEIPLIYNTSELNRASVKDKTGRWARATFKIVLSYHGNSFDGWQKQPGLNTVQGLVEK 149

Query: 64  -----------------------CGLLAGRTDKGVTALRH 78
                                  C ++AGRTDKGVTALR 
Sbjct: 150 SLGKFVDEKKAQLLKDRCLPLEGCAVVAGRTDKGVTALRQ 189

[Close]
BLAST of Cp4.1LG18g06710 vs. ExPASy TrEMBL
Match: A0A6J1C0W1 (tRNA pseudouridine synthase OS=Momordica charantia OX=3673 GN=LOC111007251 PE=3 SV=1)

HSP 1 Score: 108 bits (270), Expect = 5.91e-26
Identity = 59/100 (59.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 4   NDAETPLIYYIAELNRASVKDGTWRWARATFKIVLSFHEVSFYGWQKQPGLNTVQGMC-- 63
           NDAE PLIY  +ELNRASVKD T RWARATFKIVLS+H  SF GWQKQPGLNTVQG+   
Sbjct: 90  NDAEIPLIYNTSELNRASVKDKTGRWARATFKIVLSYHGNSFDGWQKQPGLNTVQGLVEK 149

Query: 64  -----------------------CGLLAGRTDKGVTALRH 78
                                  C ++AGRTDKGVTALR 
Sbjct: 150 SLGKFVDEKKAQLLKDRCLPLEGCAVVAGRTDKGVTALRQ 189

[Close]
BLAST of Cp4.1LG18g06710 vs. ExPASy TrEMBL
Match: A0A5D3DY63 (tRNA pseudouridine synthase A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G001640 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 9.01e-26
Identity = 58/100 (58.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 4   NDAETPLIYYIAELNRASVKDGTWRWARATFKIVLSFHEVSFYGWQKQPGLNTVQGMC-- 63
           +DAETPLIY  AELNRA+VKD T RWARA FKIVLS+H  SF GWQKQPGLNTVQG+   
Sbjct: 90  DDAETPLIYNSAELNRAAVKDKTGRWARANFKIVLSYHGNSFDGWQKQPGLNTVQGLVER 149

Query: 64  -----------------------CGLLAGRTDKGVTALRH 78
                                  C ++AGRTDKGVTALR 
Sbjct: 150 SLGKFVDEKKAQMLKDKCLPLEGCAVVAGRTDKGVTALRQ 189

[Close]
BLAST of Cp4.1LG18g06710 vs. ExPASy TrEMBL
Match: A0A5A7UXE7 (tRNA pseudouridine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004790 PE=3 SV=1)

HSP 1 Score: 106 bits (265), Expect = 3.06e-25
Identity = 58/100 (58.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 4   NDAETPLIYYIAELNRASVKDGTWRWARATFKIVLSFHEVSFYGWQKQPGLNTVQGMC-- 63
           +DAETPLIY  AELNRA+VKD T RWARA FKIVLS+H  SF GWQKQPGLNTVQG+   
Sbjct: 90  DDAETPLIYNSAELNRAAVKDKTGRWARANFKIVLSYHGNSFDGWQKQPGLNTVQGLVER 149

Query: 64  -----------------------CGLLAGRTDKGVTALRH 78
                                  C ++AGRTDKGVTALR 
Sbjct: 150 SLGKFVDEKKAQMLKDKCLPLEGCAVVAGRTDKGVTALRQ 189

[Close]
BLAST of Cp4.1LG18g06710 vs. ExPASy TrEMBL
Match: A0A1S3BWI6 (tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103494203 PE=3 SV=1)

HSP 1 Score: 106 bits (265), Expect = 3.06e-25
Identity = 58/100 (58.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 4   NDAETPLIYYIAELNRASVKDGTWRWARATFKIVLSFHEVSFYGWQKQPGLNTVQGMC-- 63
           +DAETPLIY  AELNRA+VKD T RWARA FKIVLS+H  SF GWQKQPGLNTVQG+   
Sbjct: 90  DDAETPLIYNSAELNRAAVKDKTGRWARANFKIVLSYHGNSFDGWQKQPGLNTVQGLVER 149

Query: 64  -----------------------CGLLAGRTDKGVTALRH 78
                                  C ++AGRTDKGVTALR 
Sbjct: 150 SLGKFVDEKKAQMLKDKCLPLEGCAVVAGRTDKGVTALRQ 189

[Close]
BLAST of Cp4.1LG18g06710 vs. TAIR 10
Match: AT5G35400.1 (Pseudouridine synthase family protein )

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-10
Identity = 40/102 (39.22%), Postives = 54/102 (52.94%), Query Frame = 0 

Query: 1   MIINDAETPLIYYIAELNRASVKDG-TWRWARATFKIVLSFHEVSFYGWQKQPGLNTVQG 60
           ++ +D  T  +   +E   ++ KDG + RW R  FKIVLS++  SF GWQKQP L+TVQG
Sbjct: 61  LVHDDGITEEMLLESEPETSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQG 120

Query: 61  MC-------------------CG------LLAGRTDKGVTAL 77
           +                    C       L+AGRTDKGV+AL
Sbjct: 121 VVEKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSAL 162

[Close]
BLAST of Cp4.1LG18g06710 vs. TAIR 10
Match: AT5G35400.2 (Pseudouridine synthase family protein )

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-10
Identity = 40/102 (39.22%), Postives = 54/102 (52.94%), Query Frame = 0 

Query: 1   MIINDAETPLIYYIAELNRASVKDG-TWRWARATFKIVLSFHEVSFYGWQKQPGLNTVQG 60
           ++ +D  T  +   +E   ++ KDG + RW R  FKIVLS++  SF GWQKQP L+TVQG
Sbjct: 61  LVHDDGITEEMLLESEPETSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQG 120

Query: 61  MC-------------------CG------LLAGRTDKGVTAL 77
           +                    C       L+AGRTDKGV+AL
Sbjct: 121 VVEKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSAL 162

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g06710 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g06710 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023337.12.40e-3198.21hypothetical protein SDJN02_14362, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022135240.16.51e-2659.00uncharacterized protein LOC111007251 isoform X2 [Momordica charantia][more]
XP_022135239.11.22e-2559.00uncharacterized protein LOC111007251 isoform X1 [Momordica charantia][more]
TYK28521.11.86e-2558.00tRNA pseudouridine synthase A [Cucumis melo var. makuwa][more]
XP_008453520.16.31e-2558.00PREDICTED: tRNA pseudouridine synthase A [Cucumis melo] >KAA0058161.1 tRNA pseud... [more]
BLAST of Cp4.1LG18g06710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C0L53.15e-2659.00uncharacterized protein LOC111007251 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1C0W15.91e-2659.00tRNA pseudouridine synthase OS=Momordica charantia OX=3673 GN=LOC111007251 PE=3 ... [more]
A0A5D3DY639.01e-2658.00tRNA pseudouridine synthase A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7UXE73.06e-2558.00tRNA pseudouridine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A1S3BWI63.06e-2558.00tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103494203 PE=3 SV=1[more]
BLAST of Cp4.1LG18g06710 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G35400.12.5e-1039.22Pseudouridine synthase family protein [more]
AT5G35400.22.5e-1039.22Pseudouridine synthase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001406Pseudouridine synthase I, TruAPANTHERPTHR11142PSEUDOURIDYLATE SYNTHASEcoord: 16..61
NoneNo IPR availablePANTHERPTHR11142:SF10TRNA PSEUDOURIDINE SYNTHASEcoord: 16..61
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 33..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g06710.1Cp4.1LG18g06710.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0008033 tRNA processing
biological_process GO:0009451 RNA modification
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding