Cp4.1LG18g05810 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g05810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description50S ribosomal protein L35
LocationCp4.1LG18: 6260574 .. 6262896 (-)
RNA-Seq ExpressionCp4.1LG18g05810
SyntenyCp4.1LG18g05810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGCCCTAGAAATATTTTTATTTTTTCAAAATTAAGAAATCGATAAATGAAATAAAAGCTATTCACTTTATCCGCACACCAGGCCGAGTTTGAGGCTCGTATAGATTGGCAAGAAGGAGAAAGACGAGACGCTTCCAAGCTTCAGGAGCCATGGCATCTGCTTCGGCAACGGCGTCCTTTGGTCTTAGGTTTTCCCCACTGTGCTCTCGCTCATCAGTTCGCGTCTCTCGTAGTTCTGTCCGGCTCCCGTCGTCGAACAAGGCGTACTCGTTGAGGCTTAGTTCCTCCCACAACATTTCCAGGTTTGGAGTCGCTTTAATTCAGAAGCCATGTCACATTGCTCCCAGTTCTCGAATTCGTACTCCCTTCACTGTTGTCGCTGCCAAAGGGTACAAAATGAAAACCCACAAGGTCTCTATTTCCCTCAATTCTCTGTGATTTTTGGGATATTTTTGTATGGTTTAATTCTGGTTGGATTCTGATTAATTGAAGTTAATTTCAGTATTCTAGATAATTGGATATGTTTGTTTTTTGTTTTAATCGAATTTGTATTATGATTCGAGAATGGGATTGAATTTCAAGTACTCCTTGCGGTACCCAATTCTAGACATTACTGCAGGGGCTAATGTCATTATTATTTTTGTTGAGAAGGGTTGGGAGAACAGTCACCCATCAACTAATCAACAGGTTGATCATAGATTTATAAATAACAAATAATCTCTATTGGTATTGAAGCATTGTGGGAAAACCATGAGAACTTATACTCAAAGTGGACAATATCATACTATTATGGAGAGTCATGATTCTTAACATGGTATCAAAGTTATGCCCTTAACTTAGCCATGTCAATAGAATCTTCAAATGTCGAACAAAGAAGTTGTGAGCCTCAAACTTGTAGTCAAAAGTGGCTCAAGTGTCGAACAAAATGTGTATTTTGTTCGAGGGCTCTAGAGAAGAAGTCGAGTCTCGATTGAGGGAAAGTTGTTCAAGAGCTCCATACGTCTTCGGGGAGGCTCTATGGAGTACATTGTTCGAGAGGAGGATTATTAGGGAAAAAGTCTCACATCGGATAATTAAGGAGTTGATCATGGATTTATAAGTAGGAATACATCTCTATTGATATGAGGCCTTTTAGGAAACTAAAAGCAAAGCTACGAGAGCTTATGTTCAAAGTGGACAATATCCATATAATTGTGGATGGCAGTGATTCCTAACATTGTCTTCTCTTTCTCTTGTATTGTACTGTAATTTTCTTTTTCCTTTTGATTTGATTGTTTGGTGTGACTGGATAGGCTTCAGCAAAGCGATTCAGAGTAACGGGTCGAGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACACAAAGAGGAAACTACGGCTTTCCAAAATGGTATGCCATCTTTACTTGTTTTTATTTTTATGATTCTGTATCTGTAATGCGAAATTTCCAAACTTCGAGAGTTTTTCTGGGAGAGGGTTTATATAAATGGATCAAAACTTAGCCAATGCAGCCACCATTTTCAATCACTATGCGACGAGTTATTTGACAGGAAAATAGCTTTGGTTTTGAATTTTCAGAATGTAGTACACAGCCTAGTTTTTATTGATTTATTGGTTGCGTCTGAGAGCAACAAAGGCAGTTCCTTTAGCCTTGTGTTCAAATTTGATTCGATCTAGATTGTTACCATCTGGTCGAGTCCTCTGATTTCCCCTGTGGGCATATAGATCTTATGGTTAATGAACTCTTAGAGCAACAAGAATTCATTTTACCAACAATATTCATGCCTAAGATTTTGTAACATGAACAAAGTGCCTTCTATAATACCAAAAAAGTGTGGTGGGTTGCTCTTGTTGTGCAAGGAAAATTGGCTAGTTCTCAGCATTTGTATATCTGGTTATGTTACCGAGTGTTTTCTTTGATTGGTTTCCGTCTTAACACAGCACCCAGTGAGCCGGAGTGACTACGATAATGTGATTGGTGCTTTGCCGTACCTGAAGGTGAATAGGCAGGCCAAGTAGAGGCCATCACCCCGCCCCACTACACCAGCCTCTACTCACTTCATGTGTAATCAAACGATTTTCAATTTTCCAGAACTCATCAAATGGAAAAATTCGATTGCTTAAAGATCTTATCTCTAATTTATTTCATCAGTTGATAATGGTACGCGTTCTTTTAATTCCCTTCCTCTCTTTCTTTTTGCTAACTTCATAGGCTACAAAGATGGAGCTTTATTTCTTCTATAAACTATGAGGATCTGGGAAGTCTGCCCTGTTTGCTCTGTTTCATCTCATAAACAAAGTAAT

mRNA sequence

TGGCCCTAGAAATATTTTTATTTTTTCAAAATTAAGAAATCGATAAATGAAATAAAAGCTATTCACTTTATCCGCACACCAGGCCGAGTTTGAGGCTCGTATAGATTGGCAAGAAGGAGAAAGACGAGACGCTTCCAAGCTTCAGGAGCCATGGCATCTGCTTCGGCAACGGCGTCCTTTGGTCTTAGGTTTTCCCCACTGTGCTCTCGCTCATCAGTTCGCGTCTCTCGTAGTTCTGTCCGGCTCCCGTCGTCGAACAAGGCGTACTCGTTGAGGCTTAGTTCCTCCCACAACATTTCCAGGTTTGGAGTCGCTTTAATTCAGAAGCCATGTCACATTGCTCCCAGTTCTCGAATTCGTACTCCCTTCACTGTTGTCGCTGCCAAAGGGTACAAAATGAAAACCCACAAGGCTTCAGCAAAGCGATTCAGAGTAACGGGTCGAGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACACAAAGAGGAAACTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTACGATAATGTGATTGGTGCTTTGCCGTACCTGAAGGTGAATAGGCAGGCCAAGTAGAGGCCATCACCCCGCCCCACTACACCAGCCTCTACTCACTTCATGTGCTACAAAGATGGAGCTTTATTTCTTCTATAAACTATGAGGATCTGGGAAGTCTGCCCTGTTTGCTCTGTTTCATCTCATAAACAAAGTAAT

Coding sequence (CDS)

ATGGCATCTGCTTCGGCAACGGCGTCCTTTGGTCTTAGGTTTTCCCCACTGTGCTCTCGCTCATCAGTTCGCGTCTCTCGTAGTTCTGTCCGGCTCCCGTCGTCGAACAAGGCGTACTCGTTGAGGCTTAGTTCCTCCCACAACATTTCCAGGTTTGGAGTCGCTTTAATTCAGAAGCCATGTCACATTGCTCCCAGTTCTCGAATTCGTACTCCCTTCACTGTTGTCGCTGCCAAAGGGTACAAAATGAAAACCCACAAGGCTTCAGCAAAGCGATTCAGAGTAACGGGTCGAGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACACAAAGAGGAAACTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTACGATAATGTGATTGGTGCTTTGCCGTACCTGAAGGTGAATAGGCAGGCCAAGTAG

Protein sequence

MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKPCHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Homology
[Close]
BLAST of Cp4.1LG18g05810 vs. ExPASy Swiss-Prot
Match: Q8VZ55 (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-33
Identity = 97/152 (63.82%), Postives = 107/152 (70.39%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVS-RSSVRLPSSNKAYSLRLSSSHNISRFGVALIQK 60
           MAS S  AS  + F      SS +VS RSSV   +S       LSSSH+IS     L  K
Sbjct: 1   MASLS-MASVNVSFCHPLRSSSPKVSLRSSVHFATS-------LSSSHSISGLRAVLPLK 60

Query: 61  PCHIA-PSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTK 120
              +A P+S+    FTV A KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN K
Sbjct: 61  ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNK 120

Query: 121 RKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           RKLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 121 RKLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

[Close]
BLAST of Cp4.1LG18g05810 vs. ExPASy Swiss-Prot
Match: P23326 (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.7e-31
Identity = 95/157 (60.51%), Postives = 107/157 (68.15%), Query Frame = 0 

Query: 1   MASASATASF---GLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGV-AL 60
           MASA+AT SF    L  SP  +R S     S        K+ +L LSSS +IS   V  +
Sbjct: 3   MASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKS-TLNLSSSSSISSSKVQPI 62

Query: 61  IQKPCHIAP-SSRIRT---PFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL 120
           + K   I+   S + T    FTV AAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQHLL
Sbjct: 63  VLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLL 122

Query: 121 YKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQ 150
            KKNTKRK RLSK+  V RSDYDNVIGALPYLKVNR+
Sbjct: 123 AKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158

[Close]
BLAST of Cp4.1LG18g05810 vs. ExPASy Swiss-Prot
Match: Q8YRL9 (50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of Cp4.1LG18g05810 vs. ExPASy Swiss-Prot
Match: Q3M7I2 (50S ribosomal protein L35 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of Cp4.1LG18g05810 vs. ExPASy Swiss-Prot
Match: B2J0D1 (50S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpmI PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.1e-09
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+AGK HLL  K++ +K  +SK   V   D  NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAGKSHLLEHKSSDKKRSMSKTTLVHERDELNVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of Cp4.1LG18g05810 vs. NCBI nr
Match: XP_023516182.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282 bits (721), Expect = 2.05e-95
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKP 60
           MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKP
Sbjct: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKP 60

Query: 61  CHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           CHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  CHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of Cp4.1LG18g05810 vs. NCBI nr
Match: KAG7023426.1 (50S ribosomal protein L35, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275 bits (703), Expect = 1.14e-92
Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKP 60
           MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVAL+QKP
Sbjct: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60

Query: 61  CHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HIAPSSRI TPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of Cp4.1LG18g05810 vs. NCBI nr
Match: KAG6589755.1 (50S ribosomal protein L35, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273 bits (697), Expect = 9.36e-92
Identity = 147/151 (97.35%), Postives = 148/151 (98.01%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKP 60
           MASASATASFGL FSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVAL+QKP
Sbjct: 1   MASASATASFGLMFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60

Query: 61  CHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HIAPSSRI TPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of Cp4.1LG18g05810 vs. NCBI nr
Match: XP_022922051.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 270 bits (690), Expect = 1.09e-90
Identity = 146/151 (96.69%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKP 60
           MASASATASFGLRF PLCSRSSV VSRSSVRLPSSNKAYSLRLSSSHNISRFGVAL+QKP
Sbjct: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60

Query: 61  CHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HIAPSSRI TPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of Cp4.1LG18g05810 vs. NCBI nr
Match: XP_022988597.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 267 bits (682), Expect = 1.81e-89
Identity = 143/151 (94.70%), Postives = 146/151 (96.69%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKP 60
           MASASA+ SFGLRFSPLCSRSSVRVSR SVRLPSSNKAYSLRLSSSHN+S FGVAL+QKP
Sbjct: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60

Query: 61  CHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HIAPSSRI TPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of Cp4.1LG18g05810 vs. ExPASy TrEMBL
Match: A0A6J1E327 (50S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111430115 PE=3 SV=1)

HSP 1 Score: 270 bits (690), Expect = 5.29e-91
Identity = 146/151 (96.69%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKP 60
           MASASATASFGLRF PLCSRSSV VSRSSVRLPSSNKAYSLRLSSSHNISRFGVAL+QKP
Sbjct: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60

Query: 61  CHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HIAPSSRI TPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of Cp4.1LG18g05810 vs. ExPASy TrEMBL
Match: A0A6J1JDG6 (50S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111485794 PE=3 SV=1)

HSP 1 Score: 267 bits (682), Expect = 8.77e-90
Identity = 143/151 (94.70%), Postives = 146/151 (96.69%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKP 60
           MASASA+ SFGLRFSPLCSRSSVRVSR SVRLPSSNKAYSLRLSSSHN+S FGVAL+QKP
Sbjct: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60

Query: 61  CHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HIAPSSRI TPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of Cp4.1LG18g05810 vs. ExPASy TrEMBL
Match: A0A6J1C550 (50S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV=1)

HSP 1 Score: 237 bits (605), Expect = 4.94e-78
Identity = 132/152 (86.84%), Postives = 136/152 (89.47%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSS-NKAYSLRLSSSHNISRFGVALIQK 60
           MASAS T SFGLRFSPLCSR SVRVS  SVRL SS NK  SLRL SS NIS FGVAL+QK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  PCHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
             HIAP+S++ TP TVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152

[Close]
BLAST of Cp4.1LG18g05810 vs. ExPASy TrEMBL
Match: A0A6J1EZN8 (50S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111440828 PE=3 SV=1)

HSP 1 Score: 233 bits (594), Expect = 2.27e-76
Identity = 127/151 (84.11%), Postives = 133/151 (88.08%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKP 60
           MASAS  A FGLRF+PLCSR S  VS SS+RL S NKA SLRLSSSHNIS  GVAL+QK 
Sbjct: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNKANSLRLSSSHNISGVGVALLQKS 60

Query: 61  CHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           C IAP  ++ TP TVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  CQIAPRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of Cp4.1LG18g05810 vs. ExPASy TrEMBL
Match: A0A1S3B9R8 (50S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1)

HSP 1 Score: 229 bits (585), Expect = 5.33e-75
Identity = 123/151 (81.46%), Postives = 133/151 (88.08%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKP 60
           MASAS   SFGLRFSPLCSR S RVS +SV L S NK  SL+LSSSHNIS FG+  +QKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  CHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HI+P+S+I TPFTV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR+
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151
           LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 LRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of Cp4.1LG18g05810 vs. TAIR 10
Match: AT2G24090.1 (Ribosomal protein L35 )

HSP 1 Score: 142.1 bits (357), Expect = 3.6e-34
Identity = 97/152 (63.82%), Postives = 107/152 (70.39%), Query Frame = 0 

Query: 1   MASASATASFGLRFSPLCSRSSVRVS-RSSVRLPSSNKAYSLRLSSSHNISRFGVALIQK 60
           MAS S  AS  + F      SS +VS RSSV   +S       LSSSH+IS     L  K
Sbjct: 1   MASLS-MASVNVSFCHPLRSSSPKVSLRSSVHFATS-------LSSSHSISGLRAVLPLK 60

Query: 61  PCHIA-PSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTK 120
              +A P+S+    FTV A KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN K
Sbjct: 61  ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNK 120

Query: 121 RKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           RKLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 121 RKLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g05810 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VZ555.1e-3363.8250S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3... [more]
P233264.7e-3160.5150S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 P... [more]
Q8YRL94.6e-1058.7350S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576... [more]
Q3M7I24.6e-1058.7350S ribosomal protein L35 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937... [more]
B2J0D15.1e-0957.1450S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ... [more]
BLAST of Cp4.1LG18g05810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023516182.12.05e-95100.0050S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
KAG7023426.11.14e-9298.0150S ribosomal protein L35, chloroplastic [Cucurbita argyrosperma subsp. argyrosp... [more]
KAG6589755.19.36e-9297.3550S ribosomal protein L35, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022922051.11.09e-9096.6950S ribosomal protein L35, chloroplastic-like [Cucurbita moschata][more]
XP_022988597.11.81e-8994.7050S ribosomal protein L35, chloroplastic-like [Cucurbita maxima][more]
BLAST of Cp4.1LG18g05810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E3275.29e-9196.6950S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111430115 PE=3 SV=... [more]
A0A6J1JDG68.77e-9094.7050S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111485794 PE=3 SV=1[more]
A0A6J1C5504.94e-7886.8450S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV... [more]
A0A6J1EZN82.27e-7684.1150S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111440828 PE=3 SV=... [more]
A0A1S3B9R85.33e-7581.4650S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1[more]
BLAST of Cp4.1LG18g05810 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G24090.13.6e-3463.82Ribosomal protein L35 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 143..151
IPR001706Ribosomal protein L35, non-mitochondrialPRINTSPR00064RIBOSOMALL35coord: 115..133
score: 37.84
coord: 100..114
score: 48.25
coord: 82..99
score: 61.11
IPR001706Ribosomal protein L35, non-mitochondrialTIGRFAMTIGR00001TIGR00001coord: 81..143
e-value: 2.9E-23
score: 79.9
IPR001706Ribosomal protein L35, non-mitochondrialPANTHERPTHR3334354S RIBOSOMAL PROTEIN BL35Mcoord: 26..150
IPR001706Ribosomal protein L35, non-mitochondrialHAMAPMF_00514Ribosomal_L35coord: 80..143
score: 15.647649
IPR021137Ribosomal protein L35PFAMPF01632Ribosomal_L35pcoord: 81..137
e-value: 4.0E-20
score: 72.0
IPR037229Ribosomal protein L35 superfamilyGENE3D4.10.410.60coord: 82..144
e-value: 3.0E-20
score: 74.5
IPR037229Ribosomal protein L35 superfamilySUPERFAMILY143034L35p-likecoord: 81..143
IPR018265Ribosomal protein L35, conserved sitePROSITEPS00936RIBOSOMAL_L35coord: 84..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g05810.1Cp4.1LG18g05810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome