Cp4.1LG18g05710 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g05710
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	cytochrome c oxidase assembly factor 6
Location	Cp4.1LG18: 6112161 .. 6112642 (-)
RNA-Seq Expression	Cp4.1LG18g05710
Synteny	Cp4.1LG18g05710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTCATAGCGACGTTCTAGCGGAATCTAGACAAGCTTGCTACAAGGTTCTCTCTCTCAATCACTTATTCTATAGGTTTCTGTTTGATAATAATGTTTGAGTGTTAATATGGCAATTTGATGCATCTGAACAAGCCTCGCGATAGTTTTTATGCTTGTGTGGAGAAGAAATCGGACAAAAAATCCACTGAAATAGCTTCTGTTGGCCTAATTTATCCTGCCGAGTGTAAAATTTTGAGGGCCGAATTTGTCAAGCTTTGCAGGTTTCTTGGGTGAATGTCATCGTCTGATCACTTGAGATTTCAGTAAGGCGTTGGTTCTTAGAATTTATGGTCTAGTAGGTTTTGATTTGGTAGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACGAAGATTCAAGGAGAGGTCCCTTGATGCTCCCGCAACCCAATACTTTTAAGCCTACTGATTAA

mRNA sequence

ATGAATTTTTATGCTTGTGTGGAGAAGAAATCGGACAAAAAATCCACTGAAATAGCTTCTGTTGGCCTAATTTATCCTGCCGAGTGTAAAATTTTGAGGGCCGAATTTGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACGAAGATTCAAGGAGAGGTCCCTTGATGCTCCCGCAACCCAATACTTTTAAGCCTACTGATTAA

Coding sequence (CDS)

ATGAATTTTTATGCTTGTGTGGAGAAGAAATCGGACAAAAAATCCACTGAAATAGCTTCTGTTGGCCTAATTTATCCTGCCGAGTGTAAAATTTTGAGGGCCGAATTTGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACGAAGATTCAAGGAGAGGTCCCTTGATGCTCCCGCAACCCAATACTTTTAAGCCTACTGATTAA

Protein sequence

MNFYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVKHFDRKFCQNSRVQRLLDDEDSRRGPLMLPQPNTFKPTD

Homology

[Close]

BLAST of Cp4.1LG18g05710 vs. NCBI nr
Match: KAG7023454.1 (hypothetical protein SDJN02_14479, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139 bits (351), Expect = 4.44e-41
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 2  NFYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVKHFDRKFCQNSRVQRLLDDEDSRR 61
          +FYACVEK+SDKKSTEIASVGLIYPAECKILRAEFVK   RKFCQNSRVQRLLDD+DSRR
Sbjct: 25 SFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVK-LCRKFCQNSRVQRLLDDKDSRR 84

Query: 62 GPLMLPQPNTFKPTD 76
          GPLMLPQPNTFKPTD
Sbjct: 85 GPLMLPQPNTFKPTD 98

[Close]

BLAST of Cp4.1LG18g05710 vs. NCBI nr
Match: XP_022134674.1 (uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncharacterized protein LOC111006886 [Momordica charantia])

HSP 1 Score: 134 bits (337), Expect = 9.83e-39
Identity = 67/81 (82.72%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVK--------HFDRKFCQNSRVQRLL 62
           FYACVEK+SDKK TEIASVGLIYPAECK LRAEFVK        HFDRKFCQNSRVQRLL
Sbjct: 33  FYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPT 75
           DD+DSRRGPL LPQP TFKPT
Sbjct: 93  DDKDSRRGPLSLPQPYTFKPT 113

[Close]

BLAST of Cp4.1LG18g05710 vs. NCBI nr
Match: XP_038878579.1 (uncharacterized protein LOC120070767 [Benincasa hispida])

HSP 1 Score: 132 bits (332), Expect = 5.68e-38
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVK--------HFDRKFCQNSRVQRLL 62
           FYACVEK+SDKK TEIASVGLIYPAECK LRA FVK        HFDRKFCQNSRVQRLL
Sbjct: 33  FYACVEKESDKKPTEIASVGLIYPAECKALRAYFVKLCRASWVKHFDRKFCQNSRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPT 75
           DD+DSRRGPL+LPQP TFKPT
Sbjct: 93  DDKDSRRGPLILPQPYTFKPT 113

[Close]

BLAST of Cp4.1LG18g05710 vs. NCBI nr
Match: XP_023529846.1 (cytochrome c oxidase assembly factor 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132 bits (331), Expect = 8.07e-38
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVK--------HFDRKFCQNSRVQRLL 62
           FYACVEK+SDKK TEIASVGL+YPAECK  RAEFVK        HFDRKFCQNSRVQRLL
Sbjct: 33  FYACVEKESDKKPTEIASVGLLYPAECKASRAEFVKLCRASWVKHFDRKFCQNSRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPT 75
           DD+DSRRGPL+LPQP TFKPT
Sbjct: 93  DDKDSRRGPLVLPQPYTFKPT 113

[Close]

BLAST of Cp4.1LG18g05710 vs. NCBI nr
Match: XP_022926034.1 (cytochrome c oxidase assembly factor 6 [Cucurbita moschata] >KAG6587834.1 hypothetical protein SDJN03_16399, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035672.1 hypothetical protein SDJN02_02470 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132 bits (331), Expect = 8.07e-38
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVK--------HFDRKFCQNSRVQRLL 62
           FYACVEK+SDKK TEIASVGL+YPAECK  RAEFVK        HFDRKFCQNSRVQRLL
Sbjct: 33  FYACVEKESDKKPTEIASVGLLYPAECKASRAEFVKLCRASWVKHFDRKFCQNSRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPT 75
           DD+DSRRGPL+LPQP TFKPT
Sbjct: 93  DDKDSRRGPLVLPQPYTFKPT 113

[Close]

BLAST of Cp4.1LG18g05710 vs. ExPASy TrEMBL
Match: A0A6J1BZF0 (uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006886 PE=4 SV=1)

HSP 1 Score: 134 bits (337), Expect = 4.76e-39
Identity = 67/81 (82.72%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVK--------HFDRKFCQNSRVQRLL 62
           FYACVEK+SDKK TEIASVGLIYPAECK LRAEFVK        HFDRKFCQNSRVQRLL
Sbjct: 33  FYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPT 75
           DD+DSRRGPL LPQP TFKPT
Sbjct: 93  DDKDSRRGPLSLPQPYTFKPT 113

[Close]

BLAST of Cp4.1LG18g05710 vs. ExPASy TrEMBL
Match: A0A6J1I7I2 (cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC111471973 PE=4 SV=1)

HSP 1 Score: 132 bits (331), Expect = 3.91e-38
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVK--------HFDRKFCQNSRVQRLL 62
           FYACVEK+SDKK TEIASVGL+YPAECK  RAEFVK        HFDRKFCQNSRVQRLL
Sbjct: 33  FYACVEKESDKKPTEIASVGLLYPAECKASRAEFVKLCRASWVKHFDRKFCQNSRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPT 75
           DD+DSRRGPL+LPQP TFKPT
Sbjct: 93  DDKDSRRGPLVLPQPYTFKPT 113

[Close]

BLAST of Cp4.1LG18g05710 vs. ExPASy TrEMBL
Match: A0A6J1EDW1 (cytochrome c oxidase assembly factor 6 OS=Cucurbita moschata OX=3662 GN=LOC111433269 PE=4 SV=1)

HSP 1 Score: 132 bits (331), Expect = 3.91e-38
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVK--------HFDRKFCQNSRVQRLL 62
           FYACVEK+SDKK TEIASVGL+YPAECK  RAEFVK        HFDRKFCQNSRVQRLL
Sbjct: 33  FYACVEKESDKKPTEIASVGLLYPAECKASRAEFVKLCRASWVKHFDRKFCQNSRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPT 75
           DD+DSRRGPL+LPQP TFKPT
Sbjct: 93  DDKDSRRGPLVLPQPYTFKPT 113

[Close]

BLAST of Cp4.1LG18g05710 vs. ExPASy TrEMBL
Match: A0A1S3B9T5 (uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1)

HSP 1 Score: 130 bits (327), Expect = 1.59e-37
Identity = 64/81 (79.01%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVK--------HFDRKFCQNSRVQRLL 62
           FYACVEK+SDKK TEIASVGLIYPAECK LRA++VK        HFDRKFCQNSRVQRLL
Sbjct: 33  FYACVEKESDKKPTEIASVGLIYPAECKALRADYVKLCRASWVKHFDRKFCQNSRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPT 75
           DD+D RRGPL+LPQP TFKPT
Sbjct: 93  DDKDLRRGPLILPQPYTFKPT 113

[Close]

BLAST of Cp4.1LG18g05710 vs. ExPASy TrEMBL
Match: A0A5A7SVN2 (Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00450 PE=4 SV=1)

HSP 1 Score: 130 bits (327), Expect = 1.59e-37
Identity = 64/81 (79.01%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVK--------HFDRKFCQNSRVQRLL 62
           FYACVEK+SDKK TEIASVGLIYPAECK LRA++VK        HFDRKFCQNSRVQRLL
Sbjct: 33  FYACVEKESDKKPTEIASVGLIYPAECKALRADYVKLCRASWVKHFDRKFCQNSRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPT 75
           DD+D RRGPL+LPQP TFKPT
Sbjct: 93  DDKDLRRGPLILPQPYTFKPT 113

[Close]

BLAST of Cp4.1LG18g05710 vs. TAIR 10
Match: AT5G58005.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 106.7 bits (265), Expect = 8.4e-24
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEF--------VKHFDRKFCQNSRVQRLL 62
           FYAC+EK+S KK TEIA+VGL+YP EC   R +F        VKHFDR++C+N RVQRLL
Sbjct: 33  FYACLEKESGKKPTEIATVGLLYPKECSNSRTQFVNNCRSSWVKHFDREYCRNKRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPT 76
           DD D R+GP+ LPQP TFKP+
Sbjct: 93  DDGDERKGPMSLPQPYTFKPS 113

[Close]

BLAST of Cp4.1LG18g05710 vs. TAIR 10
Match: AT5G58005.2 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 106.7 bits (265), Expect = 8.4e-24
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEF--------VKHFDRKFCQNSRVQRLL 62
           FYAC+EK+S KK TEIA+VGL+YP EC   R +F        VKHFDR++C+N RVQRLL
Sbjct: 33  FYACLEKESGKKPTEIATVGLLYPKECSNSRTQFVNNCRSSWVKHFDREYCRNKRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPT 76
           DD D R+GP+ LPQP TFKP+
Sbjct: 93  DDGDERKGPMSLPQPYTFKPS 113

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g05710 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g05710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023454.1	4.44e-41	92.00	hypothetical protein SDJN02_14479, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022134674.1	9.83e-39	82.72	uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncha...	[more]
XP_038878579.1	5.68e-38	81.48	uncharacterized protein LOC120070767 [Benincasa hispida]	[more]
XP_023529846.1	8.07e-38	80.25	cytochrome c oxidase assembly factor 6 [Cucurbita pepo subsp. pepo]	[more]
XP_022926034.1	8.07e-38	80.25	cytochrome c oxidase assembly factor 6 [Cucurbita moschata] >KAG6587834.1 hypoth...	[more]

BLAST of Cp4.1LG18g05710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZF0	4.76e-39	82.72	uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1I7I2	3.91e-38	80.25	cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC1114719...	[more]
A0A6J1EDW1	3.91e-38	80.25	cytochrome c oxidase assembly factor 6 OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A1S3B9T5	1.59e-37	79.01	uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7SVN2	1.59e-37	79.01	Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX...	[more]

BLAST of Cp4.1LG18g05710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58005.1	8.4e-24	61.73	Cytochrome c oxidase, subunit Vib family protein	[more]
AT5G58005.2	8.4e-24	61.73	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..76
None	No IPR available	PANTHER	PTHR47445	OS08G0441400 PROTEIN	coord: 3..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g05710.1	Cp4.1LG18g05710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV