Cp4.1LG18g05680 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g05680
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Nucleoid-associated protein
Location	Cp4.1LG18: 6194088 .. 6197412 (-)
RNA-Seq Expression	Cp4.1LG18g05680
Synteny	Cp4.1LG18g05680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTGGTCCGTTCTTTAAGAAGTGTAAGCGGTAGGTGATGTTTGGAAGCGAAAATCTACTAAATAGTTCATGGTTTATCCTCTCGAATTTCTCCTCGACACATTCACAGCTTTGAGCAATGGCGTCGACAATATCTCTGAGTGCTCAAGTGCCAAATCTCCGAGGGATTTCTGATTTGAAGAAGCGAAGTTAGTGCCATTCTTGAACTCTTTTTCTCTCTGAACTCTTTTTTTTTTCTTTTGGTTGCTGAGACCGTAGGAAATTGAGTTTGGATTGTTTGCTGTATCTCTGTATAGAATTGGTTGCTTGGGATTTAGTTTTGTATTGCATATTATGTAGCTATTTCGTAACCACTCAATCAAACGGAGGGATCTAAGTTGGTGCAGGTGATTAGTATGGCGTTTAGACCTAAAATGGAACTGTCTGGCGGTGCCCTCAGTTCTTATTACTTGATGGGTTAGGTTCATTTCTATATAAGAATTATAAATTTTTCGTAGAATCGAAGTAAATTTGTGATAGATGAGTGGGGGAGATCCTCTTGATTTGAACTTGGAGGCAGATGGGTCCTGTGTACATTTTTTTTTTTTGTAAAGAACATGAAAGAAAAAGGCTGTGATCTGGGAAATTAACTTGAAAACTATTTAATAAGTTTGGATAAGCCTCAAAAATTTCTAGTACTAAGGTTAACTGTAAGATTATCCACCTGAAAAACAGTTCATAGATAAGGAATTACATGAACCAGTCCAGTTTAGTTCTTAATTCGTAACCTAGACTGAAGCAGGTTGCATGTCTCATAATGCCAATGTCAGAACTGAATAAATCCTGTCTACTTCATTAGAAAATTTTAACAAGCTAGATATGTTTTGAATGACTTTCCAATTGTTGAAATGAGTATTTTATGTCAAAGAAAGTAGGAAGTCACTCCGAACGTGCGCGACAATTTTAGAATTTGGTGGTTTGTTTTTTATAATTTGAATGTAATACTTTGGAGTTCGGAGAATATATATTTTTCTGCTGCTGCAAAGTTGTCGTTTATTTCCAAAATTTCATTCTGAAATTGGAGACGAAGACCACTTTTTGTGACATTTGATTGTACACACTACACTTATTAATGTAGAATTTGTTCTTTTCTGGCTGCCTCTTACAGGTAACCTAAATTCAAAGTCAAATATAGTTGGTGCGCGGATCTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAGTAGATCTCTTTGTGTTTGTGGTTTATTTGGGGGAAAAAAGGAGAATGGGGAGAAGAGTGATGATGCGCCTTCAAAGGTAGAATTTTGATCCGCAATATGATTAAAACAGTATAAACTTTTATATCATGCTCAATAAATTTGTCATCTTCAGTAATTTAGAGACCAAACAGAAATGTCTTTCAAAGTCAGGGAACCGAAAGTGACTTTTCCTTGACCTGCTAACTTCTTTTAGGCAGGAATCTTTGGAAATATGCAGAATTTATATGAGACTGTGAGGACGGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCAGCGTAAGACTAAACAAGTCAAATACATCTTGAAGATGTTTTTCTCTGTTTTATTATGTTGCCTGAACATTTTTTTCCCTCTATGTTTCTGTTTTCCAGGGCAGAATTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTATGTTCCACCTTTATCTCTTGCGCCAAGTTCATCTTCACCTTGACCATAACTATGTGATCGCAAAGGTTGTTAGTGAATTGAACGTGTGTTGAATTTTGCTTAAGATTGTAAAATATGTTTCCCCGTCTTGAGTTTAGGTAGCTAGTAAATAAGAACACATTCTGAAGTAATGACTTGTATTTATCATTAATGTATTTGTTTTAAGTGTTACTTAGAGGGACGAACACGTCTAGAGTTTGTGATTACCAATCTTTCTTTCTTGTTTTAAGATGATAAGTGGATCCAATTTCTTTATATTCAACCAGGTTGTTGTGGATTTAAAATCTCTTGGGGCCATCTCCCTGAGATGTTAATTGGTTCCATGCAAGGCCTAGCATAGCCATCTCATTTGATGAGAATTATTAAATTAAAGAATGGGTTCATAGCCACCTCGCATCTGCCTAACATTTTTTGTTCGACTAATTTAGGTGACATTATCCGGGAACCAGCAACCTCTTCGCACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAGTGAGTATGCACTCTAACATTTGAAATGGCATTGCTCCTAATAAGCATCTTTATATTGAACTAATATTTACATCCTCAAGTCGCAACTTAATGCTGCACCACCTGTCCTGTCCTAATCCAAGCTCGGAGTATATCTTCTTCCATGTTGGTGCCCGGTGGAATTAGACCTCACAAGTTTGAAAATTGGCCGGCTACAAGACTAAGGCCTGCCTGCGTTGGAAGTTGGCTATCAAATAAATTGATATCCATAATTGACTATCTAAGAATATAGTTGCCAGTAACGTTGTAAAAAATATGTTTGCTAGGATATTTCTTGAATGGGAGGTTTACCGTAACGGCCCAAACCCACTGCTACCAGATTTCCCCTCAAGATTTTTAAAACGTGTCTGCTAGAAGAGGTTTGTACACCCATCAAAAGAATGTTTCGTTCTTCTCACAAACCAACGTGGGATCTCACATTTACACAGTGAAATAATAACTATTAAAATTTCTGATTGTGTTTAATGATGAACATTCCAAATATTCAGAGATTTACTTTACTATGCAGAAACTTTCCCTTCTGGTTACTGAAGCATATCGGGACGCACATCAGAAGAGTGTTCAGGTAAGACCTGTTCCAATACGAATTTAGTTACCAAGTCTTATTTATGCAGAACTGACGGTTGGTCCTTTGATTCTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCTCAGAGCTTAGGCATGCCCCAGGGCCTCGGTGAGGGATTAAAGTAGACTGTTTATGTGCGTCGAGCATCAGTTTTGTAAACGCAGCGGCAGTGAGACGACTAATTGTAATCCGACTTCTGCAGCAAATTCCATATTGGTTTTTACTGGTGAACTAAACGTTTGGGAACCTTTTTCTCCATCTCTAAATGTATAAAAGACGAGCTGTGATACTTACTGTGGTATCAAAGAATCGAAAGAATGAGATGAAAACGAGATTTCAAATTTGAATCTGCTATAGAAGTGATATCGACATTGGCATTTGGGTTTGATCAAGGGAAAGACATTTGATTTCTTGAAAAGAAAAAAGGCCTAATGGAAGAATGAGTGATCTGTTCCCTTGC

mRNA sequence

TATTGGTCCGTTCTTTAAGAAGTGTAAGCGGTAGGTGATGTTTGGAAGCGAAAATCTACTAAATAGTTCATGGTTTATCCTCTCGAATTTCTCCTCGACACATTCACAGCTTTGAGCAATGGCGTCGACAATATCTCTGAGTGCTCAAGTGCCAAATCTCCGAGGGATTTCTGATTTGAAGAAGCGAAGTAACCTAAATTCAAAGTCAAATATAGTTGGTGCGCGGATCTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAGTAGATCTCTTTGTGTTTGTGGTTTATTTGGGGGAAAAAAGGAGAATGGGGAGAAGAGTGATGATGCGCCTTCAAAGGCAGGAATCTTTGGAAATATGCAGAATTTATATGAGACTGTGAGGACGGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCAGCGGCAGAATTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTGACATTATCCGGGAACCAGCAACCTCTTCGCACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAAAACTTTCCCTTCTGGTTACTGAAGCATATCGGGACGCACATCAGAAGAGTGTTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCTCAGAGCTTAGGCATGCCCCAGGGCCTCGGTGAGGGATTAAAGTAGACTGTTTATGTGCGTCGAGCATCAGTTTTGTAAACGCAGCGGCAGTGAGACGACTAATTGTAATCCGACTTCTGCAGCAAATTCCATATTGGTTTTTACTGGTGAACTAAACGTTTGGGAACCTTTTTCTCCATCTCTAAATGTATAAAAGACGAGCTGTGATACTTACTGTGGTATCAAAGAATCGAAAGAATGAGATGAAAACGAGATTTCAAATTTGAATCTGCTATAGAAGTGATATCGACATTGGCATTTGGGTTTGATCAAGGGAAAGACATTTGATTTCTTGAAAAGAAAAAAGGCCTAATGGAAGAATGAGTGATCTGTTCCCTTGC

Coding sequence (CDS)

ATGGCGTCGACAATATCTCTGAGTGCTCAAGTGCCAAATCTCCGAGGGATTTCTGATTTGAAGAAGCGAAGTAACCTAAATTCAAAGTCAAATATAGTTGGTGCGCGGATCTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAGTAGATCTCTTTGTGTTTGTGGTTTATTTGGGGGAAAAAAGGAGAATGGGGAGAAGAGTGATGATGCGCCTTCAAAGGCAGGAATCTTTGGAAATATGCAGAATTTATATGAGACTGTGAGGACGGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCAGCGGCAGAATTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTGACATTATCCGGGAACCAGCAACCTCTTCGCACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAAAACTTTCCCTTCTGGTTACTGAAGCATATCGGGACGCACATCAGAAGAGTGTTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCTCAGAGCTTAGGCATGCCCCAGGGCCTCGGTGAGGGATTAAAGTAG

Protein sequence

MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMPQGLGEGLK

Homology

[Close]

BLAST of Cp4.1LG18g05680 vs. ExPASy Swiss-Prot
Match: O82230 (Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STIC2 PE=1 SV=2)

HSP 1 Score: 207.2 bits (526), Expect = 1.6e-52
Identity = 110/146 (75.34%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 43  WKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRV 102
           +K +   RSL V GLFGG  ++   S+D  SKAGIFGNMQN+YETV+ AQ VVQVEAVRV
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNKD-NNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRV 97

Query: 103 QKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKS 162
           QKELAAAEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+DAH KS
Sbjct: 98  QKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKS 157

Query: 163 VQAMKQRMSDLAQSLGMPQGLGEGLK 189
           V AMK+RMSDLAQSLGMP GL EG+K
Sbjct: 158 VVAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of Cp4.1LG18g05680 vs. ExPASy Swiss-Prot
Match: Q9M098 (Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g30620 PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 114/162 (70.37%), Postives = 130/162 (80.25%), Query Frame = 0


Query: 27  NSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYE 86
           +S+ NIV       G      N+RSL V GLFGG K+  +  +D  SKAGI GNMQNLYE
Sbjct: 27  SSRQNIVWLNRKQSG-----NNNRSLRVNGLFGGGKK--DNKEDGQSKAGILGNMQNLYE 86

Query: 87  TVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEK 146
           TV+ AQ VVQVEAVRVQKELA AEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAM+LG EK
Sbjct: 87  TVKKAQMVVQVEAVRVQKELAVAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEK 146

Query: 147 LSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMPQGLGEGLK 189
           LSLLVTEAY+DAH KSV AMK+RMSDLAQSLGMP GL +GLK
Sbjct: 147 LSLLVTEAYKDAHSKSVLAMKERMSDLAQSLGMPPGL-DGLK 180

[Close]

BLAST of Cp4.1LG18g05680 vs. ExPASy Swiss-Prot
Match: Q5N376 (Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=syc1054_d PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.9e-15
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 79  GNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEA 138
           G M+ L +  + AQQ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+PLR EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 139 AMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 181
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]

BLAST of Cp4.1LG18g05680 vs. ExPASy Swiss-Prot
Match: Q8GMT0 (Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=Synpcc7942_0464 PE=3 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 5.9e-15
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 79  GNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEA 138
           G M+ L +  + AQQ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+PLR EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 139 AMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 181
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]

BLAST of Cp4.1LG18g05680 vs. ExPASy Swiss-Prot
Match: Q8YM73 (Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=alr5067 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-13
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 79  GNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEA 138
           G M+ L E  + AQQ VQ  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+  
Sbjct: 13  GKMKELAEAFKKAQQ-VQEGAKRLQEELEQMEIQGEAGGGLVKVIVSGNQEPKRVEISPD 72

Query: 139 AMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 181
           A+  G + LS LVT A +DA+ KS   M++RM DL   L +P
Sbjct: 73  ALAQGADLLSDLVTAAMKDAYIKSTATMRERMEDLTSGLELP 113

[Close]

BLAST of Cp4.1LG18g05680 vs. NCBI nr
Match: XP_023516534.1 (nucleoid-associated protein At4g30620, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 366 bits (940), Expect = 1.36e-127
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG
Sbjct: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 188
           QGLGEGLK
Sbjct: 181 QGLGEGLK 188

[Close]

BLAST of Cp4.1LG18g05680 vs. NCBI nr
Match: KAG7023441.1 (Nucleoid-associated protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364 bits (934), Expect = 1.11e-126
Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQVPNLRGISDLKKRSNLNS SNIVGARISPYGPWKVEKNSRSLCVCGLFGG
Sbjct: 1   MASTISLSAQVPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 188
           QGLGEGLK
Sbjct: 181 QGLGEGLK 188

[Close]

BLAST of Cp4.1LG18g05680 vs. NCBI nr
Match: XP_022988592.1 (nucleoid-associated protein At2g24020, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 360 bits (924), Expect = 3.73e-125
Identity = 185/188 (98.40%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQVPNLRGIS LKKR+NLNS SNIVGARISPYGPWKVEKNSRSLCVCGLFGG
Sbjct: 1   MASTISLSAQVPNLRGISGLKKRNNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 188
           QGLGEGLK
Sbjct: 181 QGLGEGLK 188

[Close]

BLAST of Cp4.1LG18g05680 vs. NCBI nr
Match: XP_022921745.1 (nucleoid-associated protein At2g24020, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 357 bits (915), Expect = 8.49e-124
Identity = 185/188 (98.40%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQ+PNLRGISDLKKRSNLNS SNIVGARISPYGPWKVEKNSRSLCVCGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KKENGEK DDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKENGEK-DDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 188
           QGLGEGLK
Sbjct: 181 QGLGEGLK 187

[Close]

BLAST of Cp4.1LG18g05680 vs. NCBI nr
Match: XP_022932159.1 (nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022965200.1 nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 345 bits (884), Expect = 4.68e-119
Identity = 176/188 (93.62%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTIS+SAQVPNLRGISD KKRSNLNS S I+G RISPYGPWKVEKN+RSLCVCGLFGG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNNRSLCVCGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KKEN EKSDDAPSKAGIFGNMQ LYETVRTAQQVVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAY+DAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 188
           QGL EGLK
Sbjct: 181 QGLSEGLK 188

[Close]

BLAST of Cp4.1LG18g05680 vs. ExPASy TrEMBL
Match: A0A6J1JDG0 (nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111485791 PE=4 SV=1)

HSP 1 Score: 360 bits (924), Expect = 1.81e-125
Identity = 185/188 (98.40%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQVPNLRGIS LKKR+NLNS SNIVGARISPYGPWKVEKNSRSLCVCGLFGG
Sbjct: 1   MASTISLSAQVPNLRGISGLKKRNNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 188
           QGLGEGLK
Sbjct: 181 QGLGEGLK 188

[Close]

BLAST of Cp4.1LG18g05680 vs. ExPASy TrEMBL
Match: A0A6J1E6N9 (nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111429899 PE=4 SV=1)

HSP 1 Score: 357 bits (915), Expect = 4.11e-124
Identity = 185/188 (98.40%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQ+PNLRGISDLKKRSNLNS SNIVGARISPYGPWKVEKNSRSLCVCGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KKENGEK DDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKENGEK-DDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 188
           QGLGEGLK
Sbjct: 181 QGLGEGLK 187

[Close]

BLAST of Cp4.1LG18g05680 vs. ExPASy TrEMBL
Match: A0A6J1HN29 (nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465126 PE=4 SV=1)

HSP 1 Score: 345 bits (884), Expect = 2.27e-119
Identity = 176/188 (93.62%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTIS+SAQVPNLRGISD KKRSNLNS S I+G RISPYGPWKVEKN+RSLCVCGLFGG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNNRSLCVCGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KKEN EKSDDAPSKAGIFGNMQ LYETVRTAQQVVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAY+DAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 188
           QGL EGLK
Sbjct: 181 QGLSEGLK 188

[Close]

BLAST of Cp4.1LG18g05680 vs. ExPASy TrEMBL
Match: A0A6J1EW88 (nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438476 PE=4 SV=1)

HSP 1 Score: 345 bits (884), Expect = 2.27e-119
Identity = 176/188 (93.62%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTIS+SAQVPNLRGISD KKRSNLNS S I+G RISPYGPWKVEKN+RSLCVCGLFGG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNNRSLCVCGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KKEN EKSDDAPSKAGIFGNMQ LYETVRTAQQVVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAY+DAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 188
           QGL EGLK
Sbjct: 181 QGLSEGLK 188

[Close]

BLAST of Cp4.1LG18g05680 vs. ExPASy TrEMBL
Match: A0A5A7SUZ8 (Nucleoid-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00540 PE=4 SV=1)

HSP 1 Score: 333 bits (853), Expect = 1.16e-114
Identity = 172/188 (91.49%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQ+PNLRGISDLKKRSNLN  SNIVG R+SPYGPWKVEKN+RSLCV GLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KK+  EKSDDAPSKAGIFGNMQ LYETVRTAQ+VVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKDE-EKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAY+DAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 188
           QGL EGLK
Sbjct: 181 QGLSEGLK 187

[Close]

BLAST of Cp4.1LG18g05680 vs. TAIR 10
Match: AT2G24020.1 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-53
Identity = 110/146 (75.34%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 43  WKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRV 102
           +K +   RSL V GLFGG  ++   S+D  SKAGIFGNMQN+YETV+ AQ VVQVEAVRV
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNKD-NNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRV 97

Query: 103 QKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKS 162
           QKELAAAEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+DAH KS
Sbjct: 98  QKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKS 157

Query: 163 VQAMKQRMSDLAQSLGMPQGLGEGLK 189
           V AMK+RMSDLAQSLGMP GL EG+K
Sbjct: 158 VVAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of Cp4.1LG18g05680 vs. TAIR 10
Match: AT2G24020.2 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-53
Identity = 110/146 (75.34%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 43  WKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRV 102
           +K +   RSL V GLFGG  ++   S+D  SKAGIFGNMQN+YETV+ AQ VVQVEAVRV
Sbjct: 36  YKSKNGYRSLRVNGLFGGGNKD-NNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRV 95

Query: 103 QKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKS 162
           QKELAAAEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+DAH KS
Sbjct: 96  QKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKS 155

Query: 163 VQAMKQRMSDLAQSLGMPQGLGEGLK 189
           V AMK+RMSDLAQSLGMP GL EG+K
Sbjct: 156 VVAMKERMSDLAQSLGMPPGLSEGMK 180

[Close]

BLAST of Cp4.1LG18g05680 vs. TAIR 10
Match: AT4G30620.1 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 204.1 bits (518), Expect = 9.6e-53
Identity = 114/162 (70.37%), Postives = 130/162 (80.25%), Query Frame = 0


Query: 27  NSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYE 86
           +S+ NIV       G      N+RSL V GLFGG K+  +  +D  SKAGI GNMQNLYE
Sbjct: 27  SSRQNIVWLNRKQSG-----NNNRSLRVNGLFGGGKK--DNKEDGQSKAGILGNMQNLYE 86

Query: 87  TVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEK 146
           TV+ AQ VVQVEAVRVQKELA AEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAM+LG EK
Sbjct: 87  TVKKAQMVVQVEAVRVQKELAVAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEK 146

Query: 147 LSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMPQGLGEGLK 189
           LSLLVTEAY+DAH KSV AMK+RMSDLAQSLGMP GL +GLK
Sbjct: 147 LSLLVTEAYKDAHSKSVLAMKERMSDLAQSLGMPPGL-DGLK 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g05680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82230	1.6e-52	75.34	Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
Q9M098	1.4e-51	70.37	Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
Q5N376	5.9e-15	47.06	Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / ...	[more]
Q8GMT0	5.9e-15	47.06	Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain P...	[more]
Q8YM73	1.5e-13	46.08	Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 /...	[more]

BLAST of Cp4.1LG18g05680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516534.1	1.36e-127	100.00	nucleoid-associated protein At4g30620, chloroplastic-like [Cucurbita pepo subsp....	[more]
KAG7023441.1	1.11e-126	99.47	Nucleoid-associated protein, chloroplastic [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022988592.1	3.73e-125	98.40	nucleoid-associated protein At2g24020, chloroplastic-like [Cucurbita maxima]	[more]
XP_022921745.1	8.49e-124	98.40	nucleoid-associated protein At2g24020, chloroplastic-like [Cucurbita moschata]	[more]
XP_022932159.1	4.68e-119	93.62	nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita ...	[more]

BLAST of Cp4.1LG18g05680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JDG0	1.81e-125	98.40	nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucurbita maxima OX...	[more]
A0A6J1E6N9	4.11e-124	98.40	nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucurbita moschata ...	[more]
A0A6J1HN29	2.27e-119	93.62	nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbit...	[more]
A0A6J1EW88	2.27e-119	93.62	nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbit...	[more]
A0A5A7SUZ8	1.16e-114	91.49	Nucleoid-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Cp4.1LG18g05680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24020.1	1.1e-53	75.34	Uncharacterised BCR, YbaB family COG0718	[more]
AT2G24020.2	1.1e-53	75.34	Uncharacterised BCR, YbaB family COG0718	[more]
AT4G30620.1	9.6e-53	70.37	Uncharacterised BCR, YbaB family COG0718	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PFAM	PF02575	YbaB_DNA_bd	coord: 92..176 e-value: 2.6E-17 score: 62.8
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PANTHER	PTHR33449	NUCLEOID-ASSOCIATED PROTEIN YBAB	coord: 3..188
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	GENE3D	3.30.1310.10		coord: 77..184 e-value: 3.1E-32 score: 112.8
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	SUPERFAMILY	82607	YbaB-like	coord: 93..181
None	No IPR available	PANTHER	PTHR33449:SF6	SUBFAMILY NOT NAMED	coord: 3..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g05680.1	Cp4.1LG18g05680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding