Cp4.1LG18g05590 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g05590
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Eukaryotic translation initiation factor 5A
Location	Cp4.1LG18: 6172488 .. 6176319 (+)
RNA-Seq Expression	Cp4.1LG18g05590
Synteny	Cp4.1LG18g05590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAAAAAAAAAAAACAAAGGCTTTCGATTTTCTTTTTTTTTTTTTTTAATTAAAAATAATTTATATGATATGCTTTTATTCTCTTTCGCGCGCTTTCTTGTTACGGGGGAAAAAAGCAGTTAGAAACGGCGATGCGAAAGCGGGAGGGACTTAATCCAACGGCCACGATTTCATCTCTTTCAATTCGGGATTTGTGTCTCTGAAGAGCCGGGAATATTAGAGCCGATTACTTCGTCTGAGAGAAAGTGAGAAAAAAAAGGGGTCTGAAATCGAAGCAGCGATGTCGGACTAGGAGCACCACTTTGACTCTAAGGCCAACGCCGGAGCGTCGCCTCAGGAAGCTTGAACCATTCGCAGAAATGGCTACATCGTAATCAATAACAGACCCTGCAAGGTTTCCTTCTTTCTTTTTTTTTTCTCTGTAACTTTTCGGAGATTGACTTTGATCTTCTTCCATGGAGTAAATTTTGGGGGTTTGTGCTATTTTTTTAAGCTTCTCGTCTAGATTCTTTGTTATAATTTTTCCTTGGCTCTTTGTAAGGGCAGACGTTTGATTGATTGTTGTTTCTGTACTTCTATTTCCTAGTGCAGATTGTCCCCTGAATTTTTGCTCGGTGACCACTGATTATGGAAATTCTTACTGTTGTTTAGGGTCTCCCTGATTGATTTAGGTTTCCCCTTTAATTTCTCTTGTTTCGCAACGTTGATGAAACCAGGGCCGTTTAGTTACGTATTATGTGTTATCCCACAGTAACAATTGCAGGGGGAATAAATTTCGAAGAGGTTGTGCAAAATTTGGCATAATCGGTTTATTGTTTTTAATGGCAAGTATTTCTTTCACCCTAATTGGATGCGTAATATGATTTGTCGCCTTGGTTTGTCAAAAATGCATATGGACTTGGCTTATTGACTTATTGAGTTTTGCTATGGGACATGCCGTCGAACAGTTCAACAGGAACATACGGGCCATATACTGTCCCCTGTTGTGTGTTGTACAGTGCAAACAATGAGGTAGATGCCAGGCTAAATGTTAATAGTGTTTAAAAACCACGAAATTGAAACTATCCACTTTGAGCATAAGCTCTCGTGACTCTATTTTTGGTTTTGGAGGTATTATCCACTTTGAGCAATACCTCTCGTGACTCTATTTTTGGTTTTTCCAAAATGGCTCCTATCAATGGAGATGTATTCCTTACTTATAAATCCATAATCAACCTCTTAATTAGCCCACGTGGGACTCCTCTCCCAACAATCCTCCTATTGAACAAAGTACACCAGAGAGCCTCCCCTGAGACCTATGGAGCCCTTGAACAACCTCCCCTTAATAGAGGCTCGACTTCTTCTCTAGAGCCCTTGAACAAAGGGCACCCTTTGTTCAACTCTTGAGTCACTTTTGACTACCAAGAAGTAGTTTTCACAGCTCCTTATAGATTTGACGAGACTTTGAAACACTGAAATCAACTGAAACACATTGAAGAGACCTAAAAGTCAACTTCAGCCTACAACACAGAGTTGTAAAGAGTCGGTTGATAGAGATGTCAACCAGTTAAGTGGGAGAGGATGTCACGGTCATGCTTGTCCAAGGCATGTTACCTATGGCAGCATGACAGATGTTCCAGTCTTGCTTGTCTAAGTCGGTTGATAGGGAGGATGTCACGGTCATGCTTGTCTTGCTTGTTTAAGTCAGTTGACAGGTCTTTGTTCAACTCTTGAGTCACTTTTGACTACATCTTCGAGGCTCACAACTTCTTTGTTTGACATTTGAGGATTCTGTTGACATGACTAGATTAAGGGTGTGGTTCTGATACCATGTTAAAAACCACAAACTTCTACAATAGTATGATATTGTCCACTTTGAACATAAGCTTTCATGACTTTGTTTTTTATTTCCCTAAAAGGACTCATACCAATGGAGATGTATTTCTTACCCATAAACCTATGATCAACTCCTTAATTAGCCGATGTGGGACTCCTCTCCCAACAATCGTGGATATAATCTTCATGCTGCATTTGTCTTCTTGGTTAACAAAACGTCTTTGAAGCATTAACAATTGCCACAAGGTTTTGAAGTAGAAACTTCAACGACCTGAAATGAAGGGAGATAGAAAAAAGTGATGATATATGGCAGCCAAAATATGGCACTTTGTGGCAATTGACATATTCAATGGGAAGATACTTGAAGTATTTGTTCCTTCTTCTCAGAAATACGATGTAATTTCTTTGTCACTCTCTTCTTGTGTTCTACTCTCTAAGTACTAATTTTATTCTACTAACAAACGTTGCTTGTATTCCTTGCAGGTTCCCTATGTTTATCACACCGACTATCATCTGATTGATATATGTGAGGATGGTTTTGTAAGTTTCAATTATATTGAAACATGATATTGCTTTATATACGAAGCTTAGATCAATGTCTTTTGCTTCAATTGAGATTTGAGAAATATCCCCGTTCACCCCCTCCCAAGAGAGAGAAGCTCCCTGTTATAAGTTCATAACAAAAGTGTGAGACCCCGCATGAGATAGCATCAGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGTTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACTTTGAGGGGAAGCCCGAAAGGAAAAGTCTAAAGAGGACAATATCTATTAGTGGTGGGCTTGGGCCGTTACAAATAGTATCAAAGCCAGTCACCGGACGGTATGCTAGCAAGGACGTTGGCCCCCAAGGGAAGTGGATTGTGAGATCTCACATCGGTTGGAGAGGGGAATGAAGCATTCCTTATAAGGGTGTGGGAACCTCTCCCTAGCAGATGCGTTTTAAAAACTTTGAGGAGAAGCTCGAAAGGAAAAGCCCAAAAAGGACAATATCTGCTAGTGGTGAGCTTGGGCCGTTAGTTCGATTGGAAGGAGTTTTGCAATCTTAATCTATAGCACGAGGATCTTGAGTCGAGACCTATTGACTTGGTAATTTTGCAGGTCAGTCTCCGTTCTGAAAATGGAAACATCAAGGATGGTCTGAGGCTCCCCAAGGATGAAAATCTGCGTAGGCAGGTACATAAATGATTATACCATTACATTTACAAACCTTCAAGCCATTGCTTTATAGCTTTCTGCAGCACCATCTCTGTTCCATTTATTTTCATGCCAATAGCTTAAAGAGGGGTTCGCTCATAGAAAAGATCTTGTAGTAACTGTCATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAGAAGTTAAAACACAAAGCTATGGTTACACCTGATGGCTCAGAATCACCCCAACCAAAAGTTCTATCAAGTATGTTTATATGTCATAAAACCATATTCTCAGCAAGGTACTTCAAGCTATTGATCCTTGCACACTGCTGAAAGGATACATACATGTTTTACTTTATATAGTACACTACTTATAAAATGTATAACCCCCCCTGTTTTCTAAGAAGCCCTTTGAATAAGATCTTGGATTCTAGTAGGAAGATAAACAAACAGGTTTTCTGGTCTTTTGGTCTCTTTCTTCTTTTGTCTAGAGGTTGTTATTAAGGTCATTGAAGCTCATCACCATCGAGTGGCTGTTGTTTCCTTGAAAAAGGGCGAGGGCTTGGCCCGACCGATATGAATGACTGTAATTATTGTCATAAAGGCAAACAACACATAGTAATTGGATGCATGTCACTGACAAGCTGCTGAACCACACAATTCTTTATACTTCACTCCTAATCTCAAGCATCAAATAGTCAATCTTATCATCATATGACATGTTGCTATATGATTGGCACTACTATGATAGTGAGACTCGTCTTGTCCCAAGGCTCT

mRNA sequence

ATTAAAAAAAAAAAAACAAAGGCTTTCGATTTTCTTTTTTTTTTTTTTTAATTAAAAATAATTTATATGATATGCTTTTATTCTCTTTCGCGCGCTTTCTTGTTACGGGGGAAAAAAGCAGTTAGAAACGGCGATGCGAAAGCGGGAGGGACTTAATCCAACGGCCACGATTTCATCTCTTTCAATTCGGGATTTGTGTCTCTGAAGAGCCGGGAATATTAGAGCCGATTACTTCGTCTGAGAGAAAGTGAGAAAAAAAAGGGGTCTGAAATCGAAGCAGCGATGTCGGACTAGGAGCACCACTTTGACTCTAAGGCCAACGCCGGAGCGTCGCCTCAGGAAGCTTGAACCATTCGCAGAAATGGCTACATCGTAATCAATAACAGACCCTGCAAGGTTTCCTTCTTTCTTTTTTTTTTCTCTGTAACTTTTCGGAGATTGACTTTGATCTTCTTCCATGGAGTAAATTTTGGGGGTTTGTGCTATTTTTTTAAGCTTCTCGTCTAGATTCTTTGTTATAATTTTTCCTTGGCTCTTTGTAAGGGCAGACGTTTGATTGATTGTTGTTTCTGTACTTCTATTTCCTAGTGCAGATTGTCCCCTGAATTTTTGCTCGGTGACCACTGATTATGGAAATTCTTACTGTTGTTTAGGGTCTCCCTGATTGATTTAGGTTTCCCCTTTAATTTCTCTTGTTTCGCAACGTTGATGAAACCAGGGCCGTTTAGTTACGTATTATGTGTTATCCCACAGTAACAATTGCAGGGGGAATAAATTTCGAAGAGGTTGTGCAAAATTTGGCATAATCGGTTTATTGTTTTTAATGGCAAGTATTTCTTTCACCCTAATTGGATGCGTAATATGATTTGTCGCCTTGGTTTGTCAAAAATGCATATGGACTTGGCTTATTGACTTATTGAGTTTTGCTATGGGACATGCCGTCGAACAGTTCAACAGGAACATACGGGCCATATACTGTCCCCTGTTGTGTGTTGTACAGTGCAAACAATGAGGTAGATGCCAGGCTAAATGTTAATAGTGTTTAAAAACCACGAAATTGAAACTATCCACTTTGAGCATAAGCTCTCGTGACTCTATTTTTGGTTTTGGAGGTATTATCCACTTTGAGCAATACCTCTCGTGACTCTATTTTTGGTTTTTCCAAAATGGCTCCTATCAATGGAGATGTATTCCTTACTTATAAATCCATAATCAACCTCTTAATTAGCCCACGTGGGACTCCTCTCCCAACAATCCTCCTATTGAACAAAGTACACCAGAGAGCCTCCCCTGAGACCTATGGAGCCCTTGAACAACCTCCCCTTAATAGAGGCTCGACTTCTTCTCTAGAGCCCTTGAACAAAGGGCACCCTTTGTTCAACTCTTGAGTCACTTTTGACTACCAAGAAGTAGTTTTCACAGCTCCTTATAGATTTGACGAGACTTTGAAACACTGAAATCAACTGAAACACATTGAAGAGACCTAAAAGTCAACTTCAGCCTACAACACAGAGTTGTAAAGAGTCGGTTGATAGAGATGTCAACCAGTTAAGTGGGAGAGGATGTCACGGTCATGCTTGTCCAAGGCATGTTACCTATGGCAGCATGACAGATGTTCCAGTCTTGCTTGTCTAAGTCGGTTGATAGGGAGGATGTCACGGTCATGCTTGTCTTGCTTGTTTAAGTCAGTTGACAGGTCTTTGTTCAACTCTTGAGTCACTTTTGACTACATCTTCGAGGCTCACAACTTCTTTGTTTGACATTTGAGGATTCTGTTGACATGACTAGATTAAGGGTGTGGTTCTGATACCATGTTAAAAACCACAAACTTCTACAATAGTATGATATTGTCCACTTTGAACATAAGCTTTCATGACTTTGTTTTTTATTTCCCTAAAAGGACTCATACCAATGGAGATGTATTTCTTACCCATAAACCTATGATCAACTCCTTAATTAGCCGATGTGGGACTCCTCTCCCAACAATCGTGGATATAATCTTCATGCTGCATTTGTCTTCTTGGTTAACAAAACGTCTTTGAAGCATTAACAATTGCCACAAGGTTTTGAAGTAGAAACTTCAACGACCTGAAATGAAGGGAGATAGAAAAAAGTGATGATATATGGCAGCCAAAATATGGCACTTTGTGGCAATTGACATATTCAATGGGAAGATACTTGAAGTATTTGTTCCTTCTTCTCAGAAATACGATGTTCCCTATGTTTATCACACCGACTATCATCTGATTGATATATGTGAGGATGGTTTTGTCAGTCTCCGTTCTGAAAATGGAAACATCAAGGATGGTCTGAGGCTCCCCAAGGATGAAAATCTGCGTAGGCAGGTACATAAATGATTATACCATTACATTTACAAACCTTCAAGCCATTGCTTTATAGCTTTCTGCAGCACCATCTCTGTTCCATTTATTTTCATGCCAATAGCTTAAAGAGGGGTTCGCTCATAGAAAAGATCTTGTAGTAACTGTCATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAGAAGTTAAAACACAAAGCTATGGTTACACCTGATGGCTCAGAATCACCCCAACCAAAAGTTCTATCAAGTATGTTTATATGTCATAAAACCATATTCTCAGCAAGGTACTTCAAGCTATTGATCCTTGCACACTGCTGAAAGGATACATACATGTTTTACTTTATATAGTACACTACTTATAAAATGTATAACCCCCCCTGTTTTCTAAGAAGCCCTTTGAATAAGATCTTGGATTCTAGTAGGAAGATAAACAAACAGGTTTTCTGGTCTTTTGGTCTCTTTCTTCTTTTGTCTAGAGGTTGTTATTAAGGTCATTGAAGCTCATCACCATCGAGTGGCTGTTGTTTCCTTGAAAAAGGGCGAGGGCTTGGCCCGACCGATATGAATGACTGTAATTATTGTCATAAAGGCAAACAACACATAGTAATTGGATGCATGTCACTGACAAGCTGCTGAACCACACAATTCTTTATACTTCACTCCTAATCTCAAGCATCAAATAGTCAATCTTATCATCATATGACATGTTGCTATATGATTGGCACTACTATGATAGTGAGACTCGTCTTGTCCCAAGGCTCT

Coding sequence (CDS)

ATGGCAGCCAAAATATGGCACTTTGTGGCAATTGACATATTCAATGGGAAGATACTTGAAGTATTTGTTCCTTCTTCTCAGAAATACGATGTTCCCTATGTTTATCACACCGACTATCATCTGATTGATATATGTGAGGATGGTTTTGTCAGTCTCCGTTCTGAAAATGGAAACATCAAGGATGGTCTGAGGCTCCCCAAGGATGAAAATCTGCGTAGGCAGGTACATAAATGA

Protein sequence

MAAKIWHFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLPKDENLRRQVHK

Homology

[Close]

BLAST of Cp4.1LG18g05590 vs. ExPASy Swiss-Prot
Match: Q9AXQ5 (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-20
Identity = 50/69 (72.46%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +E+GN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            DENL +QV
Sbjct: 119 TDENLLKQV 127

[Close]

BLAST of Cp4.1LG18g05590 vs. ExPASy Swiss-Prot
Match: P56335 (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum OX=4113 GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.3e-20
Identity = 49/69 (71.01%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +E+GN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            DE+L +QV
Sbjct: 119 TDESLLKQV 127

[Close]

BLAST of Cp4.1LG18g05590 vs. ExPASy Swiss-Prot
Match: P56333 (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum OX=4113 GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-19
Identity = 49/69 (71.01%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            D+ L  QV
Sbjct: 119 TDDALLNQV 127

[Close]

BLAST of Cp4.1LG18g05590 vs. ExPASy Swiss-Prot
Match: P24922 (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-19
Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIF GK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            D+NL  Q+
Sbjct: 119 TDDNLLTQI 127

[Close]

BLAST of Cp4.1LG18g05590 vs. ExPASy Swiss-Prot
Match: Q9AXJ4 (Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-19
Identity = 48/69 (69.57%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFV IDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +E GN KD LRLP
Sbjct: 59  HFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            DENL  Q+
Sbjct: 119 TDENLLSQI 127

[Close]

BLAST of Cp4.1LG18g05590 vs. NCBI nr
Match: XP_023516056.1 (eukaryotic translation initiation factor 5A-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158 bits (400), Expect = 2.12e-48
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MAAKIWHFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIK 60
          MAAKIWHFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIK
Sbjct: 1  MAAKIWHFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIK 60

Query: 61 DGLRLPKDENLRRQV 75
          DGLRLPKDENLRRQ+
Sbjct: 61 DGLRLPKDENLRRQL 75

[Close]

BLAST of Cp4.1LG18g05590 vs. NCBI nr
Match: KAG6589773.1 (hypothetical protein SDJN03_15196, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136 bits (342), Expect = 7.09e-39
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LEVFVPSSQK DVP VYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP
Sbjct: 59  HFVAIDIFNGKRLEVFVPSSQKCDVPCVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 118

Query: 67  KDENLRRQV 75
           KDENLRRQ+
Sbjct: 119 KDENLRRQL 127

[Close]

BLAST of Cp4.1LG18g05590 vs. NCBI nr
Match: KAG7023445.1 (Eukaryotic translation initiation factor 5A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108 bits (270), Expect = 1.03e-27
Identity = 54/69 (78.26%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LEVFVPSSQK DVPYVYHTDYHLIDICEDGF           DGL LP
Sbjct: 62  HFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTLP 119

Query: 67  KDENLRRQV 75
           KDENLRRQ+
Sbjct: 122 KDENLRRQL 119

[Close]

BLAST of Cp4.1LG18g05590 vs. NCBI nr
Match: XP_016579792.1 (PREDICTED: eukaryotic translation initiation factor 5A-2 [Capsicum annuum] >KAF3684748.1 Eukaryotic translation initiation factor 5A-3 [Capsicum annuum] >PHT42360.1 Eukaryotic translation initiation factor 5A-3 [Capsicum baccatum] >PHU11161.1 Eukaryotic translation initiation factor 5A-3 [Capsicum chinense])

HSP 1 Score: 101 bits (252), Expect = 3.19e-25
Identity = 50/69 (72.46%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 75
            DENL +Q+
Sbjct: 119 TDENLLKQI 127

[Close]

BLAST of Cp4.1LG18g05590 vs. NCBI nr
Match: XP_009617887.1 (eukaryotic translation initiation factor 5A-1/2 [Nicotiana tomentosiformis] >XP_016466098.1 PREDICTED: eukaryotic translation initiation factor 5A-1/2-like [Nicotiana tabacum])

HSP 1 Score: 101 bits (251), Expect = 4.52e-25
Identity = 51/69 (73.91%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 75
            DENL  QV
Sbjct: 119 TDENLLNQV 127

[Close]

BLAST of Cp4.1LG18g05590 vs. ExPASy TrEMBL
Match: A0A2G2WB84 (Eukaryotic translation initiation factor 5A OS=Capsicum baccatum OX=33114 GN=CQW23_16385 PE=3 SV=1)

HSP 1 Score: 101 bits (252), Expect = 1.54e-25
Identity = 50/69 (72.46%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 75
            DENL +Q+
Sbjct: 119 TDENLLKQI 127

[Close]

BLAST of Cp4.1LG18g05590 vs. ExPASy TrEMBL
Match: A0A2G3BXD8 (Eukaryotic translation initiation factor 5A OS=Capsicum chinense OX=80379 GN=BC332_18091 PE=3 SV=1)

HSP 1 Score: 101 bits (252), Expect = 1.54e-25
Identity = 50/69 (72.46%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 75
            DENL +Q+
Sbjct: 119 TDENLLKQI 127

[Close]

BLAST of Cp4.1LG18g05590 vs. ExPASy TrEMBL
Match: A0A1U8H8M7 (Eukaryotic translation initiation factor 5A OS=Capsicum annuum OX=4072 GN=LOC107877613 PE=3 SV=1)

HSP 1 Score: 101 bits (252), Expect = 1.54e-25
Identity = 50/69 (72.46%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 75
            DENL +Q+
Sbjct: 119 TDENLLKQI 127

[Close]

BLAST of Cp4.1LG18g05590 vs. ExPASy TrEMBL
Match: A0A1S3ZPB2 (Eukaryotic translation initiation factor 5A OS=Nicotiana tabacum OX=4097 GN=LOC107788880 PE=3 SV=1)

HSP 1 Score: 101 bits (251), Expect = 2.19e-25
Identity = 51/69 (73.91%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 75
            DENL  QV
Sbjct: 119 TDENLLNQV 127

[Close]

BLAST of Cp4.1LG18g05590 vs. ExPASy TrEMBL
Match: A0A2G2Z017 (Eukaryotic translation initiation factor 5A-4 OS=Capsicum annuum OX=4072 GN=T459_18860 PE=3 SV=1)

HSP 1 Score: 101 bits (252), Expect = 2.80e-25
Identity = 50/69 (72.46%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 82  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 141

Query: 67  KDENLRRQV 75
            DENL +Q+
Sbjct: 142 TDENLLKQI 150

[Close]

BLAST of Cp4.1LG18g05590 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 87.4 bits (215), Expect = 5.4e-18
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIF  K LE  VPSS   DVP+V  TDY LIDI EDG+VSL ++NG+ KD L+LP
Sbjct: 58  HFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLP 117

Query: 67  KDENLRRQV 76
            D+ L +Q+
Sbjct: 118 NDDTLLQQI 126

[Close]

BLAST of Cp4.1LG18g05590 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-17
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIF  K LE  VPSS   DVP+V   DY LIDI EDGFVSL ++NG+ KD L+LP
Sbjct: 58  HFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLP 117

Query: 67  KDENLRRQV 76
            DE L  Q+
Sbjct: 118 TDEALLTQL 126

[Close]

BLAST of Cp4.1LG18g05590 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-16
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIF  K LE  VPSS   DVP+V   DY LIDI EDGFVSL +++G  KD L+LP
Sbjct: 58  HFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLP 117

Query: 67  KDENLRRQV 76
            D+ L  Q+
Sbjct: 118 TDDGLTAQM 126

[Close]

BLAST of Cp4.1LG18g05590 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-16
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIF  K LE  VPSS   DVP+V   DY LIDI EDGFVSL +++G  KD L+LP
Sbjct: 58  HFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLP 117

Query: 67  KDENLRRQV 76
            D+ L  Q+
Sbjct: 118 TDDGLTAQL 126

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g05590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AXQ5	1.9e-20	72.46	Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum OX=4081 PE...	[more]
P56335	7.3e-20	71.01	Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum OX=4113 GN=EI...	[more]
P56333	1.6e-19	71.01	Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum OX=4113 GN=...	[more]
P24922	1.6e-19	69.57	Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=40...	[more]
Q9AXJ4	2.1e-19	69.57	Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV...	[more]

BLAST of Cp4.1LG18g05590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516056.1	2.12e-48	98.67	eukaryotic translation initiation factor 5A-2-like [Cucurbita pepo subsp. pepo]	[more]
KAG6589773.1	7.09e-39	94.20	hypothetical protein SDJN03_15196, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7023445.1	1.03e-27	78.26	Eukaryotic translation initiation factor 5A, partial [Cucurbita argyrosperma sub...	[more]
XP_016579792.1	3.19e-25	72.46	PREDICTED: eukaryotic translation initiation factor 5A-2 [Capsicum annuum] >KAF3...	[more]
XP_009617887.1	4.52e-25	73.91	eukaryotic translation initiation factor 5A-1/2 [Nicotiana tomentosiformis] >XP_...	[more]

BLAST of Cp4.1LG18g05590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G2WB84	1.54e-25	72.46	Eukaryotic translation initiation factor 5A OS=Capsicum baccatum OX=33114 GN=CQW...	[more]
A0A2G3BXD8	1.54e-25	72.46	Eukaryotic translation initiation factor 5A OS=Capsicum chinense OX=80379 GN=BC3...	[more]
A0A1U8H8M7	1.54e-25	72.46	Eukaryotic translation initiation factor 5A OS=Capsicum annuum OX=4072 GN=LOC107...	[more]
A0A1S3ZPB2	2.19e-25	73.91	Eukaryotic translation initiation factor 5A OS=Nicotiana tabacum OX=4097 GN=LOC1...	[more]
A0A2G2Z017	2.80e-25	72.46	Eukaryotic translation initiation factor 5A-4 OS=Capsicum annuum OX=4072 GN=T459...	[more]

BLAST of Cp4.1LG18g05590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13950.1	5.4e-18	60.87	eukaryotic elongation factor 5A-1	[more]
AT1G69410.1	2.7e-17	62.32	eukaryotic elongation factor 5A-3	[more]
AT1G26630.1	1.3e-16	59.42	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]
AT1G26630.2	1.3e-16	59.42	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 34..77 e-value: 6.0E-12 score: 47.5
None	No IPR available	PANTHER	PTHR11673:SF44	EUKARYOTIC TRANSLATION INITIATION FACTOR 5A-2	coord: 6..76
IPR020189	Translation elongation factor, IF5A C-terminal	PFAM	PF01287	eIF-5a	coord: 34..76 e-value: 2.1E-9 score: 37.3
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 2..33 e-value: 3.0E-6 score: 29.0
IPR001884	Translation elongation factor IF5A-like	PANTHER	PTHR11673	TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER	coord: 6..76
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 6..40
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 34..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g05590.1	Cp4.1LG18g05590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045901	positive regulation of translational elongation
biological_process	GO:0045905	positive regulation of translational termination
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003723	RNA binding