Cp4.1LG18g05220 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g05220
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	SAM domain-containing protein
Location	Cp4.1LG18: 5970098 .. 5970946 (+)
RNA-Seq Expression	Cp4.1LG18g05220
Synteny	Cp4.1LG18g05220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGTCACAATTTCCAAACTCTTGAGCATTTCTCAGCTTGGTCGGCCACCTCCGATGGACTGGTTCTCTTGGCTCTCAAGAACTGGCCTCGACCCACTTCACACTTACGAATATGGCCTCGTTTTCGCCCGAAATGGCCTCAGACCCGAAGACATTCCTCGTTTCAACCACGATTTTCTCCAGAAAATCGGAGTTTCCATCGCCAAACACAGGCTCGAGATTCTGAAACTCGCCAAATGCGACAGAGAAGAAGCCACCCAAAAGAAATTGCTCCTTTCCGCTTTCGCCAAGACCAAGAACTGCCTCCGGAACTGCCTCAGGAAGCTTATTTTCACCAACGCCAAGTCGGAGAAGGGGATTTTCCGGGAAGACGCGGCGGTGATTTCCCCAGAGCCGATTACCTACAGCGAGGATCTCAGCCGGAAACTGGAGGTTAAGGAGGTGCTCAAGCCGCCGAAACGACGCAGTAAACACGTGTCGCTGTCCGGGCCGTTGGACGGGAGAACGCACGAGAAGTTAATGACGAACAGTAAAAGCCTAAAGCTATCTGGGCCGTTGGATAGGAAAGAGAGGCCCATGTTTCCAAGAAGCCCAAGGTCATCTGGGCCTCTGGATGGGAGAGTATCTGATTGGGCCTCGAGTAGAAGCCCAAAGCTGAATGGACCGCCGCAGGGGAGAATGATGAGGCTGATACCACCGAGCCGGAGCCCAAGAGTATCTGGGCCGCTGGATGGACGAGATGGAAGCCCAAAAATTTGCTGTCGTTGTAATAGAGAGAGGATGGAAACCGACGATGATTATCACTCATTGTGGGTTTCATTGTTCTATGACATGAAGCCCACTTGA

mRNA sequence

ATGTACGTCACAATTTCCAAACTCTTGAGCATTTCTCAGCTTGGTCGGCCACCTCCGATGGACTGGTTCTCTTGGCTCTCAAGAACTGGCCTCGACCCACTTCACACTTACGAATATGGCCTCGTTTTCGCCCGAAATGGCCTCAGACCCGAAGACATTCCTCGTTTCAACCACGATTTTCTCCAGAAAATCGGAGTTTCCATCGCCAAACACAGGCTCGAGATTCTGAAACTCGCCAAATGCGACAGAGAAGAAGCCACCCAAAAGAAATTGCTCCTTTCCGCTTTCGCCAAGACCAAGAACTGCCTCCGGAACTGCCTCAGGAAGCTTATTTTCACCAACGCCAAGTCGGAGAAGGGGATTTTCCGGGAAGACGCGGCGGTGATTTCCCCAGAGCCGATTACCTACAGCGAGGATCTCAGCCGGAAACTGGAGGTTAAGGAGGTGCTCAAGCCGCCGAAACGACGCAGTAAACACGTGTCGCTGTCCGGGCCGTTGGACGGGAGAACGCACGAGAAGTTAATGACGAACAGTAAAAGCCTAAAGCTATCTGGGCCGTTGGATAGGAAAGAGAGGCCCATGTTTCCAAGAAGCCCAAGGTCATCTGGGCCTCTGGATGGGAGAGTATCTGATTGGGCCTCGAGTAGAAGCCCAAAGCTGAATGGACCGCCGCAGGGGAGAATGATGAGGCTGATACCACCGAGCCGGAGCCCAAGAGTATCTGGGCCGCTGGATGGACGAGATGGAAGCCCAAAAATTTGCTGTCGTTGTAATAGAGAGAGGATGGAAACCGACGATGATTATCACTCATTGTGGGTTTCATTGTTCTATGACATGAAGCCCACTTGA

Coding sequence (CDS)

ATGTACGTCACAATTTCCAAACTCTTGAGCATTTCTCAGCTTGGTCGGCCACCTCCGATGGACTGGTTCTCTTGGCTCTCAAGAACTGGCCTCGACCCACTTCACACTTACGAATATGGCCTCGTTTTCGCCCGAAATGGCCTCAGACCCGAAGACATTCCTCGTTTCAACCACGATTTTCTCCAGAAAATCGGAGTTTCCATCGCCAAACACAGGCTCGAGATTCTGAAACTCGCCAAATGCGACAGAGAAGAAGCCACCCAAAAGAAATTGCTCCTTTCCGCTTTCGCCAAGACCAAGAACTGCCTCCGGAACTGCCTCAGGAAGCTTATTTTCACCAACGCCAAGTCGGAGAAGGGGATTTTCCGGGAAGACGCGGCGGTGATTTCCCCAGAGCCGATTACCTACAGCGAGGATCTCAGCCGGAAACTGGAGGTTAAGGAGGTGCTCAAGCCGCCGAAACGACGCAGTAAACACGTGTCGCTGTCCGGGCCGTTGGACGGGAGAACGCACGAGAAGTTAATGACGAACAGTAAAAGCCTAAAGCTATCTGGGCCGTTGGATAGGAAAGAGAGGCCCATGTTTCCAAGAAGCCCAAGGTCATCTGGGCCTCTGGATGGGAGAGTATCTGATTGGGCCTCGAGTAGAAGCCCAAAGCTGAATGGACCGCCGCAGGGGAGAATGATGAGGCTGATACCACCGAGCCGGAGCCCAAGAGTATCTGGGCCGCTGGATGGACGAGATGGAAGCCCAAAAATTTGCTGTCGTTGTAATAGAGAGAGGATGGAAACCGACGATGATTATCACTCATTGTGGGTTTCATTGTTCTATGACATGAAGCCCACTTGA

Protein sequence

MYVTISKLLSISQLGRPPPMDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLAKCDREEATQKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEPITYSEDLSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKERPMFPRSPRSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGRDGSPKICCRCNRERMETDDDYHSLWVSLFYDMKPT

Homology

[Close]

BLAST of Cp4.1LG18g05220 vs. NCBI nr
Match: XP_023516525.1 (uncharacterized protein LOC111780375 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 574 bits (1479), Expect = 1.24e-206
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MYVTISKLLSISQLGRPPPMDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDF 60
           MYVTISKLLSISQLGRPPPMDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDF
Sbjct: 1   MYVTISKLLSISQLGRPPPMDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDF 60

Query: 61  LQKIGVSIAKHRLEILKLAKCDREEATQKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKG 120
           LQKIGVSIAKHRLEILKLAKCDREEATQKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKG
Sbjct: 61  LQKIGVSIAKHRLEILKLAKCDREEATQKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKG 120

Query: 121 IFREDAAVISPEPITYSEDLSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKS 180
           IFREDAAVISPEPITYSEDLSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKS
Sbjct: 121 IFREDAAVISPEPITYSEDLSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKS 180

Query: 181 LKLSGPLDRKERPMFPRSPRSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRV 240
           LKLSGPLDRKERPMFPRSPRSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRV
Sbjct: 181 LKLSGPLDRKERPMFPRSPRSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRV 240

Query: 241 SGPLDGRDGSPKICCRCNRERMETDDDYHSLWVSLFYDMKPT 282
           SGPLDGRDGSPKICCRCNRERMETDDDYHSLWVSLFYDMKPT
Sbjct: 241 SGPLDGRDGSPKICCRCNRERMETDDDYHSLWVSLFYDMKPT 282

[Close]

BLAST of Cp4.1LG18g05220 vs. NCBI nr
Match: XP_022960905.1 (uncharacterized protein LOC111461567 [Cucurbita moschata])

HSP 1 Score: 570 bits (1468), Expect = 5.92e-205
Identity = 278/282 (98.58%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MYVTISKLLSISQLGRPPPMDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDF 60
           MYVTISKLLSI+QLGRPPPMDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDF
Sbjct: 1   MYVTISKLLSIAQLGRPPPMDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDF 60

Query: 61  LQKIGVSIAKHRLEILKLAKCDREEATQKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKG 120
           LQKIGVSIAKHRLEILKLAKCDREEAT+KKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKG
Sbjct: 61  LQKIGVSIAKHRLEILKLAKCDREEATRKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKG 120

Query: 121 IFREDAAVISPEPITYSEDLSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKS 180
           IFREDAAV+SPEPITYSEDLSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKS
Sbjct: 121 IFREDAAVVSPEPITYSEDLSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKS 180

Query: 181 LKLSGPLDRKERPMFPRSPRSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRV 240
           LKLSGPLDRKERPMFPRSPRSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRV
Sbjct: 181 LKLSGPLDRKERPMFPRSPRSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRV 240

Query: 241 SGPLDGRDGSPKICCRCNRERMETDDDYHSLWVSLFYDMKPT 282
           SGPLDGRDGSP+ICCRCNRERMETDDDYHSLWVSLFYDMKPT
Sbjct: 241 SGPLDGRDGSPRICCRCNRERMETDDDYHSLWVSLFYDMKPT 282

[Close]

BLAST of Cp4.1LG18g05220 vs. NCBI nr
Match: KAG6589808.1 (hypothetical protein SDJN03_15231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 531 bits (1369), Expect = 3.63e-190
Identity = 259/263 (98.48%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 20  MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA 79
           MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA 60

Query: 80  KCDREEATQKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEPITYSED 139
           KC+REEATQKKLLLSAF KTKNCLRNCLRKLIFTNAKSEKGIFREDAAV+SPEPITYSED
Sbjct: 61  KCNREEATQKKLLLSAFVKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVVSPEPITYSED 120

Query: 140 LSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKERPMFPRSP 199
           LSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKERPMFPRSP
Sbjct: 121 LSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKERPMFPRSP 180

Query: 200 RSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGRDGSPKICCRCNR 259
           RSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGRDGSP+ICCRCNR
Sbjct: 181 RSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGRDGSPRICCRCNR 240

Query: 260 ERMETDDDYHSLWVSLFYDMKPT 282
           ERMETDDDYHSLWVSLFYDMKPT
Sbjct: 241 ERMETDDDYHSLWVSLFYDMKPT 263

[Close]

BLAST of Cp4.1LG18g05220 vs. NCBI nr
Match: KAG7023481.1 (hypothetical protein SDJN02_14506, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 531 bits (1368), Expect = 5.16e-190
Identity = 258/263 (98.10%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 20  MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA 79
           MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA 60

Query: 80  KCDREEATQKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEPITYSED 139
           KC+REEATQKKLLLSAF KTKNCLRNCLRKLIFTNAKSEKGIFREDAAV+SPEPITYSED
Sbjct: 61  KCNREEATQKKLLLSAFVKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVVSPEPITYSED 120

Query: 140 LSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKERPMFPRSP 199
           LSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKERPMFPRSP
Sbjct: 121 LSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKERPMFPRSP 180

Query: 200 RSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGRDGSPKICCRCNR 259
           RSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGRDGSP++CCRCNR
Sbjct: 181 RSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGRDGSPRVCCRCNR 240

Query: 260 ERMETDDDYHSLWVSLFYDMKPT 282
           ERMETDDDYHSLWVSLFYDMKPT
Sbjct: 241 ERMETDDDYHSLWVSLFYDMKPT 263

[Close]

BLAST of Cp4.1LG18g05220 vs. NCBI nr
Match: XP_022987839.1 (uncharacterized protein LOC111485262 [Cucurbita maxima])

HSP 1 Score: 520 bits (1338), Expect = 1.93e-185
Identity = 254/263 (96.58%), Postives = 258/263 (98.10%), Query Frame = 0


Query: 20  MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA 79
           MDWFSWLSRTGLDPLHTYEYGLVFARNGL+PEDIPRFNHDFLQ+IGVSIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLHTYEYGLVFARNGLKPEDIPRFNHDFLQRIGVSIAKHRLEILKLA 60

Query: 80  KCDREEATQKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEPITYSED 139
           KCDREEATQKKLLLSA AKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEPITYSED
Sbjct: 61  KCDREEATQKKLLLSALAKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEPITYSED 120

Query: 140 LSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKERPMFPRSP 199
           LSRK EVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKERPM PRSP
Sbjct: 121 LSRKQEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKERPMVPRSP 180

Query: 200 RSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGRDGSPKICCRCNR 259
           R SGPLDGRVSDWASSRSPK+NGPPQGRMMRLIPPSRSPRVS PLDGRDGSP+ICCRCNR
Sbjct: 181 RLSGPLDGRVSDWASSRSPKMNGPPQGRMMRLIPPSRSPRVSEPLDGRDGSPRICCRCNR 240

Query: 260 ERMETDDDYHSLWVSLFYDMKPT 282
           ERMETDDDYHSLWVSLFYDMKPT
Sbjct: 241 ERMETDDDYHSLWVSLFYDMKPT 263

[Close]

BLAST of Cp4.1LG18g05220 vs. ExPASy TrEMBL
Match: A0A6J1HAF4 (uncharacterized protein LOC111461567 OS=Cucurbita moschata OX=3662 GN=LOC111461567 PE=4 SV=1)

HSP 1 Score: 570 bits (1468), Expect = 2.86e-205
Identity = 278/282 (98.58%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MYVTISKLLSISQLGRPPPMDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDF 60
           MYVTISKLLSI+QLGRPPPMDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDF
Sbjct: 1   MYVTISKLLSIAQLGRPPPMDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDF 60

Query: 61  LQKIGVSIAKHRLEILKLAKCDREEATQKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKG 120
           LQKIGVSIAKHRLEILKLAKCDREEAT+KKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKG
Sbjct: 61  LQKIGVSIAKHRLEILKLAKCDREEATRKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKG 120

Query: 121 IFREDAAVISPEPITYSEDLSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKS 180
           IFREDAAV+SPEPITYSEDLSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKS
Sbjct: 121 IFREDAAVVSPEPITYSEDLSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKS 180

Query: 181 LKLSGPLDRKERPMFPRSPRSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRV 240
           LKLSGPLDRKERPMFPRSPRSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRV
Sbjct: 181 LKLSGPLDRKERPMFPRSPRSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRV 240

Query: 241 SGPLDGRDGSPKICCRCNRERMETDDDYHSLWVSLFYDMKPT 282
           SGPLDGRDGSP+ICCRCNRERMETDDDYHSLWVSLFYDMKPT
Sbjct: 241 SGPLDGRDGSPRICCRCNRERMETDDDYHSLWVSLFYDMKPT 282

[Close]

BLAST of Cp4.1LG18g05220 vs. ExPASy TrEMBL
Match: A0A6J1JJY8 (uncharacterized protein LOC111485262 OS=Cucurbita maxima OX=3661 GN=LOC111485262 PE=4 SV=1)

HSP 1 Score: 520 bits (1338), Expect = 9.35e-186
Identity = 254/263 (96.58%), Postives = 258/263 (98.10%), Query Frame = 0


Query: 20  MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA 79
           MDWFSWLSRTGLDPLHTYEYGLVFARNGL+PEDIPRFNHDFLQ+IGVSIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLHTYEYGLVFARNGLKPEDIPRFNHDFLQRIGVSIAKHRLEILKLA 60

Query: 80  KCDREEATQKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEPITYSED 139
           KCDREEATQKKLLLSA AKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEPITYSED
Sbjct: 61  KCDREEATQKKLLLSALAKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEPITYSED 120

Query: 140 LSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKERPMFPRSP 199
           LSRK EVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKERPM PRSP
Sbjct: 121 LSRKQEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKERPMVPRSP 180

Query: 200 RSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGRDGSPKICCRCNR 259
           R SGPLDGRVSDWASSRSPK+NGPPQGRMMRLIPPSRSPRVS PLDGRDGSP+ICCRCNR
Sbjct: 181 RLSGPLDGRVSDWASSRSPKMNGPPQGRMMRLIPPSRSPRVSEPLDGRDGSPRICCRCNR 240

Query: 260 ERMETDDDYHSLWVSLFYDMKPT 282
           ERMETDDDYHSLWVSLFYDMKPT
Sbjct: 241 ERMETDDDYHSLWVSLFYDMKPT 263

[Close]

BLAST of Cp4.1LG18g05220 vs. ExPASy TrEMBL
Match: A0A6J1C2N7 (uncharacterized protein LOC111006885 OS=Momordica charantia OX=3673 GN=LOC111006885 PE=4 SV=1)

HSP 1 Score: 429 bits (1103), Expect = 8.26e-150
Identity = 213/272 (78.31%), Postives = 235/272 (86.40%), Query Frame = 0


Query: 20  MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA 79
           MDWFSWLSRTGLDPLHTYEYGL+FARNG+RPEDIPRFNHDFL KIGVS+AKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNGIRPEDIPRFNHDFLHKIGVSVAKHRLEILKLA 60

Query: 80  KCDREEATQKKL-----LLSAFAKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEPI 139
           K + EE   KK      L+SAFAKTK CLRNC+RKL+ +N K E+ +FRE  A ISPE +
Sbjct: 61  KLENEEPAAKKFPAAAPLVSAFAKTKKCLRNCIRKLVPSNGKPERAVFREGTAGISPETM 120

Query: 140 TYSEDLSRKLEVKEVLK--PPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKER 199
           +YSE+L RK EV+EV K  P  RR K+VSLSGPLDGR HEK MTN KSLKLSGPLDRKER
Sbjct: 121 SYSENLGRKQEVEEVWKRKPASRRRKNVSLSGPLDGRGHEKAMTNCKSLKLSGPLDRKER 180

Query: 200 PMFPRSPRSSGPLDGRVSDW--ASSRSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGRDGS 259
           PMF RSPR+SGPLDGRVSDW  AS++SPK NGPPQG+MMRLIP SRSPRVSGPLDGRDGS
Sbjct: 181 PMFSRSPRTSGPLDGRVSDWVAASNKSPKFNGPPQGKMMRLIPSSRSPRVSGPLDGRDGS 240

Query: 260 PKICCRCNRERMETDDDYHSLWVSLFYDMKPT 282
           P+ICCRCNRER+ETDDDYHSLWVSLFYD+KPT
Sbjct: 241 PRICCRCNRERIETDDDYHSLWVSLFYDLKPT 272

[Close]

BLAST of Cp4.1LG18g05220 vs. ExPASy TrEMBL
Match: A0A0A0LTT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264010 PE=4 SV=1)

HSP 1 Score: 390 bits (1003), Expect = 1.11e-134
Identity = 203/275 (73.82%), Postives = 225/275 (81.82%), Query Frame = 0


Query: 20  MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA 79
           MDWFSWLSRTGLDPL+TYEYGL+FARN L+PEDIPRFNH FLQKIG+SIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60

Query: 80  KCDREEATQKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEPITYSED 139
           K    +      L+SAF KTK CLRNCLR+LI  +   EK I       ISPEP   S D
Sbjct: 61  KSHTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEKPI-------ISPEPPPSSLD 120

Query: 140 LSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKER------- 199
              K++VKEVLKPP+RRSKHVSLSGPLD RTHEK + +SKSLKLSGPLDRKER       
Sbjct: 121 -EPKVKVKEVLKPPRRRSKHVSLSGPLD-RTHEKFVMSSKSLKLSGPLDRKERAPSSPSP 180

Query: 200 ----PMFPRSPRSSGPLDGRVSDWA-SSRSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGR 259
               PMF RSPR+SGPLDGR+SDW+ S++SPK+NGPPQGRMMRLIPPSRSPRVSGPLDGR
Sbjct: 181 SPLPPMFTRSPRTSGPLDGRISDWSLSNKSPKMNGPPQGRMMRLIPPSRSPRVSGPLDGR 240

Query: 260 DGSPKICCRCNRERMETDDDYHSLWVSLFYDMKPT 282
           DGSP+ICCRCNRERME++DDYHSLWVSLFYDMKPT
Sbjct: 241 DGSPRICCRCNRERMESEDDYHSLWVSLFYDMKPT 266

[Close]

BLAST of Cp4.1LG18g05220 vs. ExPASy TrEMBL
Match: A0A5A7U992 (Sterile alpha motif, type 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00390 PE=4 SV=1)

HSP 1 Score: 390 bits (1001), Expect = 2.32e-134
Identity = 204/276 (73.91%), Postives = 225/276 (81.52%), Query Frame = 0


Query: 20  MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA 79
           MDWFSWLSRTGLDPLHTYEYGL+FARN L+PEDIPRFNH FLQKIG+SIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60

Query: 80  KCDR-EEATQKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEPITYSE 139
           K     +      L+SAF KTK CLRNCLR+LI  +   +K I       ISPEP   S 
Sbjct: 61  KSHTTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPAPDKPI-------ISPEPPPSSL 120

Query: 140 DLSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNSKSLKLSGPLDRKERP----- 199
           D   K++VKEVLKPP+RRSKHVSLSGPLD RTHEK + +SKSLKLSGPLDRKERP     
Sbjct: 121 D-EPKVKVKEVLKPPRRRSKHVSLSGPLD-RTHEKFVMSSKSLKLSGPLDRKERPPPSPS 180

Query: 200 ------MFPRSPRSSGPLDGRVSDWA-SSRSPKLNGPPQGRMMRLIPPSRSPRVSGPLDG 259
                 MFPRSPR+SGPLDGR+SDW  S++SPK+NGPPQGRMMRLIPPSRSPRVSGPLDG
Sbjct: 181 PSPLPPMFPRSPRTSGPLDGRISDWGLSNKSPKVNGPPQGRMMRLIPPSRSPRVSGPLDG 240

Query: 260 RDGSPKICCRCNRERMETDDDYHSLWVSLFYDMKPT 282
           RDGSP+ICCRCNRERME++DDYHSLWVSLFYDMKPT
Sbjct: 241 RDGSPRICCRCNRERMESEDDYHSLWVSLFYDMKPT 267

[Close]

BLAST of Cp4.1LG18g05220 vs. TAIR 10
Match: AT2G12462.1 (BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 129.4 bits (324), Expect = 4.5e-30
Identity = 97/283 (34.28%), Postives = 146/283 (51.59%), Query Frame = 0


Query: 20  MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA 79
           MDWFSWLS+T LDP  +YEYGL+FA+  L+ EDI  FNH+FL+++GV++ KHR+EILKL+
Sbjct: 1   MDWFSWLSKTDLDPTLSYEYGLIFAQKKLQGEDIALFNHNFLRRLGVTVTKHRVEILKLS 60

Query: 80  KCDREEATQ------KKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEP 139
           K + +  +          L+S   K    + N L K +     +     +E     SP P
Sbjct: 61  KRETQALSSYNHRPVSAKLISVVIKATKSVGNRLNKWLSLGGTAVVEPLKEKQ---SPPP 120

Query: 140 --------ITYSEDLSRKLEVKEVLKPPKRRSKHVSLSGPLD---GRTHEKLMTNSKSLK 199
                      +  ++ +  V +V + P  + K +  SGPLD   G   +  + +++S+ 
Sbjct: 121 AYRTGAFLTGNNNKVNAEKAVVQVERLPVIKRKRIVKSGPLDRNHGIQEKMTLVSNRSMN 180

Query: 200 LSGPLDR--KERPMFP-RSPRSSGPLDGRVSDWASSRSPKLNGPPQGRMMRLIPPSRSPR 259
           LSGPLDR  +ER +   RSP  SG LDG +++                  RL       R
Sbjct: 181 LSGPLDRSVQERLILAYRSPIVSGQLDGNLNE------------------RL-------R 240

Query: 260 VSGPLDGRDGSPKICCRCNRERMETDDDYHSLWVSLFYDMKPT 283
           +SGPL GR  SP +    N+     DDD  + W ++F+++KPT
Sbjct: 241 LSGPLKGRPPSPSVYVEYNKR----DDD--TRWDAMFHNLKPT 249

[Close]

BLAST of Cp4.1LG18g05220 vs. TAIR 10
Match: AT1G80520.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 95.5 bits (236), Expect = 7.2e-20
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 20  MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA 79
           MDWFSWLSRT L+    YEYGL F+ N L  EDI  FNH+FLQ +G+SIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTNLEASLIYEYGLSFSNNELEYEDIAYFNHEFLQSMGISIAKHRLEILKLA 60

Query: 80  KCDREEA--TQKKL--LLSAFAKTKNCLRNCLRKLI 112
           + DR+ +  T + +  +L A  KT  C    +R  I
Sbjct: 61  RRDRKPSPLTARSIFRVLIAIKKTGKCFSEHVRAWI 96

[Close]

BLAST of Cp4.1LG18g05220 vs. TAIR 10
Match: AT1G15760.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-19
Identity = 49/95 (51.58%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 22  WFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLAKC 81
           WFSWLSRT L+P   +EYGL F++N L  EDI  F+H+FLQ +G+SIAKHRLEILKLA+ 
Sbjct: 5   WFSWLSRTNLEPSLIHEYGLSFSQNELEHEDISYFDHEFLQSMGISIAKHRLEILKLARR 64

Query: 82  DREEA---TQKKL--LLSAFAKTKNCLRNCLRKLI 112
           DR+ +   T + +  +++A  KT+ CL + +R  I
Sbjct: 65  DRKNSPPLTSRSISRVVTAIKKTRKCLSDHVRAWI 99

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g05220 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g05220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516525.1	1.24e-206	100.00	uncharacterized protein LOC111780375 [Cucurbita pepo subsp. pepo]	[more]
XP_022960905.1	5.92e-205	98.58	uncharacterized protein LOC111461567 [Cucurbita moschata]	[more]
KAG6589808.1	3.63e-190	98.48	hypothetical protein SDJN03_15231, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7023481.1	5.16e-190	98.10	hypothetical protein SDJN02_14506, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022987839.1	1.93e-185	96.58	uncharacterized protein LOC111485262 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG18g05220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAF4	2.86e-205	98.58	uncharacterized protein LOC111461567 OS=Cucurbita moschata OX=3662 GN=LOC1114615...	[more]
A0A6J1JJY8	9.35e-186	96.58	uncharacterized protein LOC111485262 OS=Cucurbita maxima OX=3661 GN=LOC111485262...	[more]
A0A6J1C2N7	8.26e-150	78.31	uncharacterized protein LOC111006885 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A0A0LTT1	1.11e-134	73.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264010 PE=4 SV=1	[more]
A0A5A7U992	2.32e-134	73.91	Sterile alpha motif, type 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Cp4.1LG18g05220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G12462.1	4.5e-30	34.28	BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-con...	[more]
AT1G80520.1	7.2e-20	54.17	Sterile alpha motif (SAM) domain-containing protein	[more]
AT1G15760.1	1.2e-19	51.58	Sterile alpha motif (SAM) domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001660	Sterile alpha motif domain	PFAM	PF07647	SAM_2	coord: 25..79 e-value: 1.6E-4 score: 21.7
IPR013761	Sterile alpha motif/pointed domain superfamily	GENE3D	1.10.150.50		coord: 19..87 e-value: 1.2E-9 score: 39.6
IPR013761	Sterile alpha motif/pointed domain superfamily	SUPERFAMILY	47769	SAM/Pointed domain	coord: 25..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..176
None	No IPR available	PANTHER	PTHR33915:SF3	STERILE ALPHA MOTIF (SAM) DOMAIN PROTEIN	coord: 20..282
None	No IPR available	PANTHER	PTHR33915	OSJNBA0033G05.11 PROTEIN	coord: 20..282
None	No IPR available	CDD	cd09487	SAM_superfamily	coord: 21..81 e-value: 5.70919E-9 score: 49.5453

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g05220.1	Cp4.1LG18g05220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding