Cp4.1LG18g05100 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g05100
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG18: 5787302 .. 5788331 (+)
RNA-Seq Expression	Cp4.1LG18g05100
Synteny	Cp4.1LG18g05100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGCCTGCTCCTCCTGGTTGGAACTAAAAGGTCTCCCCCTATTTTTTGTCTGTCCCTTATACTTTCATTTGCCCATTTCTTTTGCTGTGAATTTGCTGCCATTTCTGTGTTGCAATCTAAAGCTTGACTAGGCTTATATTGAGGGTAGGGCTAATGGGTATCCTTGGAATCGACCCTTCTTCTTAACTGTTTGAATTCTTATGCTTTGGGGTTACGGGTTTGGGTTTACGCTCATTAGCCATGTGAGATCCCACGTCGGTCGGAGAGTGAAATAAAACATTCTCTATAAGCGTGTGTTATAATTGTGAGACTGACGACGATACGTAACGGACCAAAGTAAACAATATTTACTATCGGTGAGTTTAAGCTGTTACGAGCTGGTTATTCTTTAGTGTGCTCTGTTCGAAAAAGTATGTGATTCTTTGTTCCCTTGTTTTGTTTATACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTGAGGGAATGGTTGTTTCTTTTAGCGAGGTGTGTTGGGTTTTCTAACAACTTTGATTGATGTTAATGAGTTTTGATTAAGTTGAGTTAAAATGAGAGGTGAAAAGTTGTTAGTTTATTTGTCGTTATTGGTATGGAAACCTTCTCGTAGCAGACGCGTTTTAAAGTCGTGAGGGGAAGTCCGAAAGGGAAAGCCCAAAGAGGACAATATTTGCTAGCGGTATTGAAATCACACCCTGCTAATCCACCATCTTCTGAGTTTGATTGGGGTACTGCTGAAACACCTAAAAGATCTGCTAGAATTAGTGAGAAGGCTAAGGCAGCTCCCTTGCCTCAAACTCAACGCCGCCCAAAGAAACGAACACGAACACAAGCTCTTTCAAAGACAGATGCTAAAGATGCAGTCGATGTTGTCCTAGACAGTTTTGATAAGGCAGGAGTTCATAAGCTCGCTGTTAAAGATGGGACCGATGTCGAGACCAGCCCCGCCCCCGCCTCGGCTGCTCGCGTGCCAGAAGAGGGATAG

mRNA sequence

ATGGAGGAATGGTTGTTTCTTTTAGCGAGTGAGAAGGCTAAGGCAGCTCCCTTGCCTCAAACTCAACGCCGCCCAAAGAAACGAACACGAACACAAGCTCTTTCAAAGACAGATGCTAAAGATGCAGTCGATGTTGTCCTAGACAGTTTTGATAAGGCAGGAGTTCATAAGCTCGCTGTTAAAGATGGGACCGATGTCGAGACCAGCCCCGCCCCCGCCTCGGCTGCTCGCGTGCCAGAAGAGGGATAG

Coding sequence (CDS)

ATGGAGGAATGGTTGTTTCTTTTAGCGAGTGAGAAGGCTAAGGCAGCTCCCTTGCCTCAAACTCAACGCCGCCCAAAGAAACGAACACGAACACAAGCTCTTTCAAAGACAGATGCTAAAGATGCAGTCGATGTTGTCCTAGACAGTTTTGATAAGGCAGGAGTTCATAAGCTCGCTGTTAAAGATGGGACCGATGTCGAGACCAGCCCCGCCCCCGCCTCGGCTGCTCGCGTGCCAGAAGAGGGATAG

Protein sequence

MEEWLFLLASEKAKAAPLPQTQRRPKKRTRTQALSKTDAKDAVDVVLDSFDKAGVHKLAVKDGTDVETSPAPASAARVPEEG

Homology

[Close]

BLAST of Cp4.1LG18g05100 vs. NCBI nr
Match: KAG6589840.1 (Glucan endo-1,3-beta-glucosidase 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 50.8 bits (120), Expect = 6.09e-05
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 54 GVHKL-AVKDGTDVETSPAPASAARVPEEG 82
          GVHKL AVKDGTDVET P PASAARVPEEG
Sbjct: 23 GVHKLEAVKDGTDVETGPTPASAARVPEEG 52

[Close]

BLAST of Cp4.1LG18g05100 vs. NCBI nr
Match: XP_038880161.1 (methyl-CpG-binding domain-containing protein 11-like isoform X2 [Benincasa hispida])

HSP 1 Score: 49.3 bits (116), Expect = 1.80e-04
Identity = 28/48 (58.33%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 10  SEKAKAAPLPQTQRRPKKRTRTQALSKTDAKDAVDVVLDSFDKAGVHK 57
           SEKAKAAP      RPKKRTR Q LS+ D     DVV D F++ GVHK
Sbjct: 89  SEKAKAAPPSPQIERPKKRTRKQPLSRKDDNKEADVVPDGFEEKGVHK 136

[Close]

BLAST of Cp4.1LG18g05100 vs. NCBI nr
Match: XP_038880160.1 (methyl-CpG-binding domain-containing protein 11-like isoform X1 [Benincasa hispida])

HSP 1 Score: 49.3 bits (116), Expect = 1.96e-04
Identity = 28/48 (58.33%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 10  SEKAKAAPLPQTQRRPKKRTRTQALSKTDAKDAVDVVLDSFDKAGVHK 57
           SEKAKAAP      RPKKRTR Q LS+ D     DVV D F++ GVHK
Sbjct: 125 SEKAKAAPPSPQIERPKKRTRKQPLSRKDDNKEADVVPDGFEEKGVHK 172

[Close]

BLAST of Cp4.1LG18g05100 vs. NCBI nr
Match: KAG7023512.1 (hypothetical protein SDJN02_14538, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 47.8 bits (112), Expect = 1.96e-04
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 54 GVHKL-AVKDGTDVET--SPAPASAARVPEEG 82
          GVHKL AVKDGTDVET  +PAPASAARVPEEG
Sbjct: 23 GVHKLEAVKDGTDVETGPAPAPASAARVPEEG 54

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g05100 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g05100 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589840.1	6.09e-05	90.00	Glucan endo-1,3-beta-glucosidase 11, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_038880161.1	1.80e-04	58.33	methyl-CpG-binding domain-containing protein 11-like isoform X2 [Benincasa hispi...	[more]
XP_038880160.1	1.96e-04	58.33	methyl-CpG-binding domain-containing protein 11-like isoform X1 [Benincasa hispi...	[more]
KAG7023512.1	1.96e-04	87.50	hypothetical protein SDJN02_14538, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG18g05100 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g05100 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g05100.1	Cp4.1LG18g05100.1	mRNA