Cp4.1LG18g04950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g04950
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	YABBY protein
Location	Cp4.1LG18: 5778295 .. 5780743 (-)
RNA-Seq Expression	Cp4.1LG18g04950
Synteny	Cp4.1LG18g04950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAGATATAGATAAAAGGTTAGATTTAGTTTGGGTAGAAAAAGGAGGTGAAAGTTTTAGAGTGTCGTGATATAGAATGATCCAATTATGAGGAAGAGAAGAGGAGAGAATAAAAGCTATTTATTGTTGGAGCTTCTTCTCTTACTTTCTTCACCTTTTTCTCTCCACACTCTTCTTCTTCTTCTTCTTCGTCTTCCTCCTCTTCACCCAAAGCACACTCCTGTTTGATTCATTGCCTCCATCAGCACCACCCATCACCCCATGGCCAGCTGCCTCGATATTGCAACTGAACAGCTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTACTCATAAATTCTCTTCTTTGTCTTCTNTTTTTTTTTTTTTTTTTTTTTTTCTAGATCTTTATGGAAAGTGCTCAATTCAAATGTTTTTCTACATGAAAATGGGTGAGGGAAAGAGATTAATATGGGAAATTTTGAGTTATGATGAACACAACTCATTGATGCCTTTTCTTNGTATGACCCTACAAGTGACTAGGGAATCTATTAAGAGGAACTAACATCTACTACAAATCTCAAAACATCATGCAACCATCTAAAAAAACCCTAAACAAAAACACCCTTTTCGGGTTTCGTCGTAATTTTATTTCTATCAACTTAAGCTTTTGAGTGGAAGAATTCGGCATAGATTAATGATTTTGACGATGACGATGACGATGATGATGGGCAGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGGCTCTTTCCTGGCAAGATGTTCAGGTAACCCTAATAACCTAAACTTATAATTCAATGAAAAAGGCTTCAAATTTTGCATCTTTTTGACAAATTCGATGTGACCCAGATTCTAAAATCTTGAAACTAAGACAACCCACTTCAAAGTTTTCATTTTTATTTACACCACACAAAACCCTAGATAGCTACCTCCCACAGCTACTCAGCCGCCATAACCCCCATTGTTTTCCTCTTTTATCCACTGAGTTTCTTCATGTTCTTCCAGATTTTAAGTGCTTTTGCGTTTAGGGTTCTTTTAGTTTTTGTAGTATGAAGCCTATATTGGTAGCTAGGTTTCTTTTGTCATTTACTGTTCCAACATTCACAGAAAAAGGAAAAGATAGGCCAAGATCTGAAACCCCCCTTTTGAATTTGTTTGGATATTCAACTCTCATCTGGGTATTATATGCTTTATGAACTCATCAAACATCGTTTAACGGGTCGAGGATTGTTAGGAGAGAGTCCCACATTTGCTAATTTACAGAAGGATCATGCGTTTAGAGTTTAAGCTCAAAGTGTGGTAATTTTTAGTTTTCTGACATGTCGGTTGAACTATGCTTGAATTGGAATATGAAAATTTGTAGGTTCCGAATTACAACTTATACAGTTGTAACGGACCTGATTTTCAAGGTGATTTTGGATCGTCGTCGTCTTCATCATCATCGAAATGTAATAACAACAAGATGGAAATCCGAGCGAACACAACAATGGCAACAGAGGAGAGGGTTGTGAATCGACGTTAGTGTTCTTTCATTTACTTTCCTCTGCAAATCTCTTAAAAAAAATTTGAAATTTTATGAGTTGTTGTTATCCTTTTTCAGCTCCCGAGAAGAAGCAGAGAGTACCATCTGCATATAATCAGTTCATAAAGTGAGTAACCAAAGCCTTCACAACTTCTTTCAAAAATGTTCTAAATTCATTATATTTTCAGTTCTTAATTGTGATTTAATTGTGTTTCAGAGAGGAAATCCAAAGGATTAAGGCTAATAATCCTGAGATTAGCCATAGAGAAGCTTTCAGTACTGCAGCCAAGAACGTAAGCTTAATTTACAATAAACAAATTTTGGATGAAATGAATTTAAATTTGCTTATAAATCTCCAATTTTGATCAGTGGGCACATTATCCTCGTATACCCTTTTGGTCGGATGTTGGAAATCAGCAATCAAATGAAGCTAGATGATGTAAGTAAACGTGAAAAACTAGATTAAATTATAAGTTTATGTTCGTTCGTTTAAACGTTTTAAAGTTCATACACGAAATAGATAAAGATCTCGAATTTGATTCGAACGAATCTTCATTTGATATTGTTTTGGTGTTTGTTTGGTCAGGGTTTGGAGCGTTTGATGTGAAGGGCATGAAGGAGTGATGAATGAAGTTGCTGTTTTTTTTCTTTTTTCTTCTTATTTTACTTCATGAAAACAAACCCCAATGACTTGAATTTGTTGTTGAATTCAAGTGACAACTATAATATCTATCCATCTTTGGGTTGCTGTTGCATTATTTTCCACTATTGCTATCAAAATTTGACTTGAAAACTGTCACAATCTCTAATGATATCCTCATATGATGTGAATCTTCACAAGAAAATGACG

mRNA sequence

TATAGATATAGATAAAAGGTTAGATTTAGTTTGGGTAGAAAAAGGAGGTGAAAGTTTTAGAGTGTCGTGATATAGAATGATCCAATTATGAGGAAGAGAAGAGGAGAGAATAAAAGCTATTTATTGTTGGAGCTTCTTCTCTTACTTTCTTCACCTTTTTCTCTCCACACTCTTCTTCTTCTTCTTCTTCGTCTTCCTCCTCTTCACCCAAAGCACACTCCTGTTTGATTCATTGCCTCCATCAGCACCACCCATCACCCCATGGCCAGCTGCCTCGATATTGCAACTGAACAGCTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGGCTCTTTCCTGGCAAGATGTTCAGGTTCCGAATTACAACTTATACAGTTGTAACGGACCTGATTTTCAAGGTGATTTTGGATCGTCGTCGTCTTCATCATCATCGAAATGTAATAACAACAAGATGGAAATCCGAGCGAACACAACAATGGCAACAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAAGCAGAGAGTACCATCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCTAATAATCCTGAGATTAGCCATAGAGAAGCTTTCAGTACTGCAGCCAAGAACGGTTTGGAGCGTTTGATGTGAAGGGCATGAAGGAGTGATGAATGAAGTTGCTGTTTTTTTTCTTTTTTCTTCTTATTTTACTTCATGAAAACAAACCCCAATGACTTGAATTTGTTGTTGAATTCAAGTGACAACTATAATATCTATCCATCTTTGGGTTGCTGTTGCATTATTTTCCACTATTGCTATCAAAATTTGACTTGAAAACTGTCACAATCTCTAATGATATCCTCATATGATGTGAATCTTCACAAGAAAATGACG

Coding sequence (CDS)

ATGGCCAGCTGCCTCGATATTGCAACTGAACAGCTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGGCTCTTTCCTGGCAAGATGTTCAGGTTCCGAATTACAACTTATACAGTTGTAACGGACCTGATTTTCAAGGTGATTTTGGATCGTCGTCGTCTTCATCATCATCGAAATGTAATAACAACAAGATGGAAATCCGAGCGAACACAACAATGGCAACAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAAGCAGAGAGTACCATCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCTAATAATCCTGAGATTAGCCATAGAGAAGCTTTCAGTACTGCAGCCAAGAACGGTTTGGAGCGTTTGATGTGA

Protein sequence

MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNGLERLM

Homology

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BLAST of Cp4.1LG18g04950 vs. ExPASy Swiss-Prot
Match: Q8GW46 (Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-50
Identity = 106/152 (69.74%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 7   IATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDVQV 66
           +ATEQLCYIPCNFCNI+LAV+VPCSSLFDIVTVRCGHCTNLWSVNMAAA Q+LS  + Q 
Sbjct: 6   MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQA 65

Query: 67  PNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEKKQRVPS 126
            NY +          ++GSSS S      + K+  R +T   TE+R+VNRPPEK+QRVPS
Sbjct: 66  TNYAV---------PEYGSSSRS------HTKIPSRISTRTITEQRIVNRPPEKRQRVPS 125

Query: 127 AYNQFIKEEIQRIKANNPEISHREAFSTAAKN 159
           AYNQFIKEEIQRIKANNP+ISHREAFSTAAKN
Sbjct: 126 AYNQFIKEEIQRIKANNPDISHREAFSTAAKN 142

[Close]

BLAST of Cp4.1LG18g04950 vs. ExPASy Swiss-Prot
Match: Q10FZ7 (Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.5e-34
Identity = 80/151 (52.98%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 8   ATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDVQVP 67
           A E +CY+ CNFCN + AVSVP +S+ +IVTVRCGHCT+L SVN+    QAL  +D    
Sbjct: 8   APEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQD 67

Query: 68  NYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEKKQRVPSA 127
           N  +++ +  +   ++GSSS         +K +        TE  +  RPPEK+QRVPSA
Sbjct: 68  NLKMHNMSFRENYSEYGSSSRYGRVPMMFSKND--------TEHMLHVRPPEKRQRVPSA 127

Query: 128 YNQFIKEEIQRIKANNPEISHREAFSTAAKN 159
           YN+FIKEEI+RIKANNP+ISHREAFSTAAKN
Sbjct: 128 YNRFIKEEIRRIKANNPDISHREAFSTAAKN 150

[Close]

BLAST of Cp4.1LG18g04950 vs. ExPASy Swiss-Prot
Match: Q2QM17 (Protein YABBY 6 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB6 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.6e-32
Identity = 86/158 (54.43%), Postives = 106/158 (67.09%), Query Frame = 0


Query: 10  EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAF-QALSWQDVQVPN 69
           EQ+CY+ CNFCN +LAVSVP +S+ +IVTVRCGHCTNL SVN+      A + QD    +
Sbjct: 9   EQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHH 68

Query: 70  YNLYSCNG--PDFQG--DFGSSSSSSSSKCN----NNKMEIRANTTMATEERVVNRPPEK 129
                 +G   D  G  +FG S++SSSSK         M   +      E+ +  RPPEK
Sbjct: 69  LQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEK 128

Query: 130 KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 159
           +QRVPSAYN+FIKEEI+RIKANNP+ISHREAFSTAAKN
Sbjct: 129 RQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKN 166

[Close]

BLAST of Cp4.1LG18g04950 vs. ExPASy Swiss-Prot
Match: Q9XFB0 (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana OX=3702 GN=YAB2 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.8e-31
Identity = 81/158 (51.27%), Postives = 100/158 (63.29%), Query Frame = 0


Query: 5   LDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS---- 64
           +D ++E++CY+ C+FC  +LAVSVP +SLF +VTVRCGHCTNL S+N+  +    S    
Sbjct: 3   VDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPI 62

Query: 65  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEK 124
            QD+Q    +  S               +SSS+  NN  E   N           RPPEK
Sbjct: 63  HQDLQPHRQHTTSL--------VTRKDCASSSRSTNNLSE---NIDREAPRMPPIRPPEK 122

Query: 125 KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 159
           +QRVPSAYN+FIKEEIQRIKA NPEISHREAFSTAAKN
Sbjct: 123 RQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKN 149

[Close]

BLAST of Cp4.1LG18g04950 vs. ExPASy Swiss-Prot
Match: Q7XIM7 (Protein YABBY 1 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB1 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-30
Identity = 80/157 (50.96%), Postives = 104/157 (66.24%), Query Frame = 0


Query: 5   LDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDV 64
           +   +E +CY+ CN+CN +L V+VP +  ++IVTVRCGHCT + S+++A   QA + QD 
Sbjct: 3   VQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDH 62

Query: 65  QVPNYNLYSCNGPDFQG-DFGSSSSSSSSKCNNNKMEIRANTTMATEERVVN--RPPEKK 124
           QV N          FQG +FGS   +S      N+    A   M T ++ V+  RPPEK+
Sbjct: 63  QVQNRG--------FQGNNFGSYDIAS-----RNQRTSTAMYPMPTSQQQVSPIRPPEKR 122

Query: 125 QRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 159
           QRVPSAYN+FIKEEIQRIK +NPEISHREAFS AAKN
Sbjct: 123 QRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKN 146

[Close]

BLAST of Cp4.1LG18g04950 vs. NCBI nr
Match: XP_023515707.1 (axial regulator YABBY 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317 bits (811), Expect = 1.79e-108
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60
           MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS
Sbjct: 1   MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60

Query: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEK 120
           WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEK
Sbjct: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEK 120

Query: 121 KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 158
           KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN
Sbjct: 121 KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 158

[Close]

BLAST of Cp4.1LG18g04950 vs. NCBI nr
Match: KAG7023513.1 (Axial regulator YABBY 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308 bits (789), Expect = 4.20e-105
Identity = 156/159 (98.11%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60
           MASCLDIA EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS
Sbjct: 1   MASCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60

Query: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSS-KCNNNKMEIRANTTMATEERVVNRPPE 120
           WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSS KCNNNKMEIRANTTM TEERVVNRPPE
Sbjct: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSSKCNNNKMEIRANTTMGTEERVVNRPPE 120

Query: 121 KKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 158
           KKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN
Sbjct: 121 KKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 159

[Close]

BLAST of Cp4.1LG18g04950 vs. NCBI nr
Match: KAG6589841.1 (Axial regulator YABBY 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 308 bits (788), Expect = 5.76e-105
Identity = 154/158 (97.47%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 1   MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60
           MASCLDIA EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS
Sbjct: 1   MASCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60

Query: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEK 120
           WQDVQVPNYNLYS NGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTM TEER+VNRPPEK
Sbjct: 61  WQDVQVPNYNLYSGNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMGTEERIVNRPPEK 120

Query: 121 KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 158
           KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN
Sbjct: 121 KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 158

[Close]

BLAST of Cp4.1LG18g04950 vs. NCBI nr
Match: XP_022960833.1 (axial regulator YABBY 5-like [Cucurbita moschata])

HSP 1 Score: 306 bits (783), Expect = 3.45e-104
Identity = 155/159 (97.48%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60
           MASCLDIA EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS
Sbjct: 1   MASCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60

Query: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSS-KCNNNKMEIRANTTMATEERVVNRPPE 120
           WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSS KC NNKMEIRANTTM TEERVVNRPPE
Sbjct: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSSKCENNKMEIRANTTMGTEERVVNRPPE 120

Query: 121 KKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 158
           KKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN
Sbjct: 121 KKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 159

[Close]

BLAST of Cp4.1LG18g04950 vs. NCBI nr
Match: XP_022987887.1 (axial regulator YABBY 5-like [Cucurbita maxima])

HSP 1 Score: 305 bits (781), Expect = 6.27e-104
Identity = 154/158 (97.47%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60
           MASCLDIA EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS
Sbjct: 1   MASCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60

Query: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEK 120
           WQDVQVPNYNLYSCNGPDFQGDFGSSSSSS  KCNNNKMEIRANTTMA EERVVNRPPEK
Sbjct: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSS--KCNNNKMEIRANTTMAAEERVVNRPPEK 120

Query: 121 KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 158
           KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN
Sbjct: 121 KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 156

[Close]

BLAST of Cp4.1LG18g04950 vs. ExPASy TrEMBL
Match: A0A6J1HA48 (axial regulator YABBY 5-like OS=Cucurbita moschata OX=3662 GN=LOC111461521 PE=3 SV=1)

HSP 1 Score: 306 bits (783), Expect = 1.67e-104
Identity = 155/159 (97.48%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60
           MASCLDIA EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS
Sbjct: 1   MASCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60

Query: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSS-KCNNNKMEIRANTTMATEERVVNRPPE 120
           WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSS KC NNKMEIRANTTM TEERVVNRPPE
Sbjct: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSSKCENNKMEIRANTTMGTEERVVNRPPE 120

Query: 121 KKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 158
           KKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN
Sbjct: 121 KKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 159

[Close]

BLAST of Cp4.1LG18g04950 vs. ExPASy TrEMBL
Match: A0A6J1JBL1 (axial regulator YABBY 5-like OS=Cucurbita maxima OX=3661 GN=LOC111485293 PE=3 SV=1)

HSP 1 Score: 305 bits (781), Expect = 3.04e-104
Identity = 154/158 (97.47%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60
           MASCLDIA EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS
Sbjct: 1   MASCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60

Query: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEK 120
           WQDVQVPNYNLYSCNGPDFQGDFGSSSSSS  KCNNNKMEIRANTTMA EERVVNRPPEK
Sbjct: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSS--KCNNNKMEIRANTTMAAEERVVNRPPEK 120

Query: 121 KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 158
           KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN
Sbjct: 121 KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 156

[Close]

BLAST of Cp4.1LG18g04950 vs. ExPASy TrEMBL
Match: A0A6J1CSS6 (axial regulator YABBY 5-like OS=Momordica charantia OX=3673 GN=LOC111014425 PE=3 SV=1)

HSP 1 Score: 289 bits (739), Expect = 1.04e-97
Identity = 144/158 (91.14%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60
           MASC+DIA EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQ+LS
Sbjct: 1   MASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60

Query: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEK 120
           WQDVQVPNYNLYSC+GPDFQGDFGSSS     KCNNNKMEIRA TT+  EERVVNRPPEK
Sbjct: 61  WQDVQVPNYNLYSCSGPDFQGDFGSSS-----KCNNNKMEIRAPTTIPAEERVVNRPPEK 120

Query: 121 KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 158
           +QRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN
Sbjct: 121 RQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 153

[Close]

BLAST of Cp4.1LG18g04950 vs. ExPASy TrEMBL
Match: A0A6J1KTI6 (axial regulator YABBY 5-like OS=Cucurbita maxima OX=3661 GN=LOC111497478 PE=3 SV=1)

HSP 1 Score: 275 bits (704), Expect = 2.58e-92
Identity = 139/159 (87.42%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60
           M+SC+DIA EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQ+LS
Sbjct: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60

Query: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSKC-NNNKMEIRANTTMATEERVVNRPPE 120
           WQDVQVPNYNLY+ +GPDFQGDFGSSS     KC NNNKM+IR +TT+A EERVVNRPPE
Sbjct: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSS-----KCDNNNKMQIRDSTTIAAEERVVNRPPE 120

Query: 121 KKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 158
           K+QRVPSAYNQFIKEEIQRIKA NPEISHREAFSTAAKN
Sbjct: 121 KRQRVPSAYNQFIKEEIQRIKAKNPEISHREAFSTAAKN 154

[Close]

BLAST of Cp4.1LG18g04950 vs. ExPASy TrEMBL
Match: A0A6J1F4T3 (axial regulator YABBY 5-like OS=Cucurbita moschata OX=3662 GN=LOC111440865 PE=3 SV=1)

HSP 1 Score: 275 bits (702), Expect = 5.02e-92
Identity = 136/158 (86.08%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS 60
           M+SC+DIA EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQ+LS
Sbjct: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60

Query: 61  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEK 120
           WQDVQVPNYNLY+ +GPDFQGDFGSSS     KC+NNKM+IR + T+A EERVVNRPPEK
Sbjct: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSS-----KCDNNKMQIRDSATIAAEERVVNRPPEK 120

Query: 121 KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 158
           +QRVPSAYNQFIKEEI+RIKA NPEISHREAFSTAAKN
Sbjct: 121 RQRVPSAYNQFIKEEIRRIKAKNPEISHREAFSTAAKN 153

[Close]

BLAST of Cp4.1LG18g04950 vs. TAIR 10
Match: AT2G26580.1 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 201.1 bits (510), Expect = 7.1e-52
Identity = 106/152 (69.74%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 7   IATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDVQV 66
           +ATEQLCYIPCNFCNI+LAV+VPCSSLFDIVTVRCGHCTNLWSVNMAAA Q+LS  + Q 
Sbjct: 6   MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQA 65

Query: 67  PNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEKKQRVPS 126
            NY +          ++GSSS S      + K+  R +T   TE+R+VNRPPEK+QRVPS
Sbjct: 66  TNYAV---------PEYGSSSRS------HTKIPSRISTRTITEQRIVNRPPEKRQRVPS 125

Query: 127 AYNQFIKEEIQRIKANNPEISHREAFSTAAKN 159
           AYNQFIKEEIQRIKANNP+ISHREAFSTAAKN
Sbjct: 126 AYNQFIKEEIQRIKANNPDISHREAFSTAAKN 142

[Close]

BLAST of Cp4.1LG18g04950 vs. TAIR 10
Match: AT2G26580.2 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 201.1 bits (510), Expect = 7.1e-52
Identity = 106/152 (69.74%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 7   IATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDVQV 66
           +ATEQLCYIPCNFCNI+LAV+VPCSSLFDIVTVRCGHCTNLWSVNMAAA Q+LS  + Q 
Sbjct: 6   MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQA 65

Query: 67  PNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEKKQRVPS 126
            NY +          ++GSSS S      + K+  R +T   TE+R+VNRPPEK+QRVPS
Sbjct: 66  TNYAV---------PEYGSSSRS------HTKIPSRISTRTITEQRIVNRPPEKRQRVPS 125

Query: 127 AYNQFIKEEIQRIKANNPEISHREAFSTAAKN 159
           AYNQFIKEEIQRIKANNP+ISHREAFSTAAKN
Sbjct: 126 AYNQFIKEEIQRIKANNPDISHREAFSTAAKN 142

[Close]

BLAST of Cp4.1LG18g04950 vs. TAIR 10
Match: AT1G08465.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 134.8 bits (338), Expect = 6.2e-32
Identity = 81/158 (51.27%), Postives = 100/158 (63.29%), Query Frame = 0


Query: 5   LDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALS---- 64
           +D ++E++CY+ C+FC  +LAVSVP +SLF +VTVRCGHCTNL S+N+  +    S    
Sbjct: 3   VDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPI 62

Query: 65  WQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEK 124
            QD+Q    +  S               +SSS+  NN  E   N           RPPEK
Sbjct: 63  HQDLQPHRQHTTSL--------VTRKDCASSSRSTNNLSE---NIDREAPRMPPIRPPEK 122

Query: 125 KQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 159
           +QRVPSAYN+FIKEEIQRIKA NPEISHREAFSTAAKN
Sbjct: 123 RQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKN 149

[Close]

BLAST of Cp4.1LG18g04950 vs. TAIR 10
Match: AT2G45190.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-29
Identity = 79/165 (47.88%), Postives = 100/165 (60.61%), Query Frame = 0


Query: 9   TEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAA-AFQALSWQDVQVP 68
           ++ LCY+ CNFC  +LAV+VP +SLF  VTVRCG CTNL SVNM +    A +   +Q+ 
Sbjct: 22  SDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLG 81

Query: 69  NYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTM--------------ATEERV 128
            ++ +  N  D   +   + S      N N M +  + TM                +   
Sbjct: 82  PHSYF--NPQDILEELRDAPS------NMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPP 141

Query: 129 VNRPPEKKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 159
           VNRPPEK+QRVPSAYN+FIKEEIQRIKA NP+ISHREAFS AAKN
Sbjct: 142 VNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN 178

[Close]

BLAST of Cp4.1LG18g04950 vs. TAIR 10
Match: AT4G00180.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 124.4 bits (311), Expect = 8.4e-29
Identity = 80/172 (46.51%), Postives = 97/172 (56.40%), Query Frame = 0


Query: 8   ATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDVQVP 67
           +T+QLCY+ C+FC+ VLAVSVP SSLF  VTVRCGHC+NL SV +  + +AL    V   
Sbjct: 21  STDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTV--SMRALLLPSVSNL 80

Query: 68  NYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVV------------- 127
            ++      P    +      S     N N M     +     E +V             
Sbjct: 81  GHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQ 140

Query: 128 --------NRPPEKKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 159
                   NRPPEK+QRVPSAYN+FIKEEIQRIKA NP+ISHREAFS AAKN
Sbjct: 141 EMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN 190

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g04950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW46	1.0e-50	69.74	Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1	[more]
Q10FZ7	8.5e-34	52.98	Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1	[more]
Q2QM17	3.6e-32	54.43	Protein YABBY 6 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB6 PE=2 SV=1	[more]
Q9XFB0	8.8e-31	51.27	Putative axial regulator YABBY 2 OS=Arabidopsis thaliana OX=3702 GN=YAB2 PE=1 SV...	[more]
Q7XIM7	1.1e-30	50.96	Protein YABBY 1 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB1 PE=2 SV=1	[more]

BLAST of Cp4.1LG18g04950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515707.1	1.79e-108	100.00	axial regulator YABBY 5-like [Cucurbita pepo subsp. pepo]	[more]
KAG7023513.1	4.20e-105	98.11	Axial regulator YABBY 5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6589841.1	5.76e-105	97.47	Axial regulator YABBY 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022960833.1	3.45e-104	97.48	axial regulator YABBY 5-like [Cucurbita moschata]	[more]
XP_022987887.1	6.27e-104	97.47	axial regulator YABBY 5-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG18g04950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HA48	1.67e-104	97.48	axial regulator YABBY 5-like OS=Cucurbita moschata OX=3662 GN=LOC111461521 PE=3 ...	[more]
A0A6J1JBL1	3.04e-104	97.47	axial regulator YABBY 5-like OS=Cucurbita maxima OX=3661 GN=LOC111485293 PE=3 SV...	[more]
A0A6J1CSS6	1.04e-97	91.14	axial regulator YABBY 5-like OS=Momordica charantia OX=3673 GN=LOC111014425 PE=3...	[more]
A0A6J1KTI6	2.58e-92	87.42	axial regulator YABBY 5-like OS=Cucurbita maxima OX=3661 GN=LOC111497478 PE=3 SV...	[more]
A0A6J1F4T3	5.02e-92	86.08	axial regulator YABBY 5-like OS=Cucurbita moschata OX=3662 GN=LOC111440865 PE=3 ...	[more]

BLAST of Cp4.1LG18g04950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26580.1	7.1e-52	69.74	plant-specific transcription factor YABBY family protein	[more]
AT2G26580.2	7.1e-52	69.74	plant-specific transcription factor YABBY family protein	[more]
AT1G08465.1	6.2e-32	51.27	Plant-specific transcription factor YABBY family protein	[more]
AT2G45190.1	2.2e-29	47.88	Plant-specific transcription factor YABBY family protein	[more]
AT4G00180.1	8.4e-29	46.51	Plant-specific transcription factor YABBY family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006780	YABBY protein	PFAM	PF04690	YABBY	coord: 8..158 e-value: 1.7E-61 score: 207.7
IPR006780	YABBY protein	PANTHER	PTHR31675	PROTEIN YABBY 6-RELATED	coord: 1..158
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 106..158 e-value: 7.3E-5 score: 25.0
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 112..155
None	No IPR available	PANTHER	PTHR31675:SF6	AXIAL REGULATOR YABBY 5	coord: 1..158
None	No IPR available	CDD	cd00084	HMG-box	coord: 123..150 e-value: 8.00096E-4 score: 34.5168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g04950.1	Cp4.1LG18g04950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:2000024	regulation of leaf development
biological_process	GO:1902183	regulation of shoot apical meristem development
biological_process	GO:0007275	multicellular organism development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding