Cp4.1LG18g04940 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g04940
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ribosome biogenesis regulatory protein
Location	Cp4.1LG18: 5706110 .. 5708985 (-)
RNA-Seq Expression	Cp4.1LG18g04940
Synteny	Cp4.1LG18g04940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTTGTGGGCCCGCATGGCCGTGAGAACAACTAGGGTTAACTGTGCGAAGAAAACGATATAACGGCGTCGTTTCGTGGAGAAGCAAGCAACTTCTCTTGTCCCACTCCTAAACCCTGAATTTGGTATTTGCTCTTTCGCCTGAGAAGTCTCTTGAATCGGCCGGTGATGGAGACGCCGCAGGAAGTTCAGGTCGACATTGGTCATCTAATGGCGTTCAATCCTCACCACCATTTCACTTCCCCGCCGTCCTCCAGGTTAGCCTCTTCTCCCTCCGGCAAATCTATTATGCAAACCACGTTTACACCTCCTGTTGTTGCTACACGGACTAAGTTCGTATTTTCCGGAACTTTGGGTTTTCTTTTAGTTGTTGGTTCTGCTCTTTCGTTTCCTTTGATTGACATCTTTGAACCGGATTTTGGCTTTGAGGAACTATGATTTCTCAGCCTTGGAATACTGTTTGTTTGGTTAATTTCTGAAAGCATGTTATTGAAAAGAATCCGATAATTAGAAAAGAACTTTGATGTAGTTAATGTTTTGAGGGTTTTGGTTGTTTTGAATCTGTATATTATTTTGAACACATTGGCATGAACATATATATTTGAAGAGAATCTTTACTATTTTTGCTTGGTTGCTTCTATACTTACAGGGAGGAGCTAGTGAATGAATGTCTACAGAAGGGTACAGAGCTAGTTCAAGCTATTGCTAATGAACTTTTCATCCTGCCTTCAACTGAAGATAGAGATGGTCCTCTAGTGAAGTTGTCTCAACCTAAAACAAAATTGCCCAGGGAGAAGCCTGTAAGCCCATGAATATTTGATATTTTCGTTTATCATTTCGTTTTCGCTTTTAAACTATGGATGTTTATATTTTGGTTGGGTGATGTCTTTCTTTCTTTCCAGCTTCCGAAGCCTAAGGCTCCTACAAAATGGGAACTTTTTGCTAAAAAACGAGGTTGGACGTTTTTTTTATGCTTTGATCCTGTTTTGTGCTGTTTTGTATTGTATTAAAAGATTCATGTTTCCAATCCTTCAATTGTGTGGATTGAATTGAATTGAGCTGAAAGTCTTACTTGCTGTAAAGGAAAAAACTGCTAAAGATGAAAAGAAACAACTAACAAGAAGAATGAGAGGCATCCGAACACAAGACTTTGGAATTGGGAGTTTCTGGGGTGGAATTTAATTTTAGTACTCTGTGACTTTTGCAGGTATAAAAAACAGGAAAAAAGATAAGATTCTGTATGATGAACAAACTCAAACATGGAAGCGTCGCCATGGTTATGATCGTGCAAATGATGAGGAGAACATACCCATCATTGAGGCCAAGATGACAGATGGTATTATTTAATATAACCTTGCATTTTAAGATGGACTACTTTTCTTGATGTCAAATTTCTGAACATAATAACTTTGACAGAGAGAATTTGAATATTGATACTGCCCTTTCCACTAGACTAATATAGATATCAAAATGCCCATTAAGTATCATGCTTTTTTGCATTTGCAGAGCCAGGCGTCGATCCCTTTGCTAAGAGGCAAGAAAATAAGAGGAAACGAGTTGAAAAGCAAGAAAATAATCGCTTACAGAATCTGAAACAAGCTGCAAAAGTTGGTGCTTTGCCAAGGTTTTACCCTCTTATCACAGTTATTGGGTGTTGATCAAGTAATTAGATTATATCTTCTCACAATCATACTAATGCGTATGTTTGGGGATTTAAACTTCTTCGACATTGTCCCATTTGTTCCTACTTTGGGTAGGAAGGTGGAGCATTTGACCACAACTTGTACCTGTTAAACCCATTGATTCGTGCCTTTCGTTTCCAACAATATCATAATGTCTTAACTCTGTCTTTTGATTTTCATCAGTTTTCTGATATATATAGCTAAGTTGATTAAACTGATGCAGCCACGTTCAACTAGCTGCAACTGCTCTGCCCATAACCGGGACGCAAGCTACAACAAAGAAAATTACAAAAGACGAGCTTGGAAACGTGGCTGGAATGGCTGCAACCGCAACAGCTAGTGGTGGAAAATTCGACAAGAAGTTGCCTGGAGAAAAGCCTCCAAAGCATGAAGGAAAATATCGCAAGGTTAACTAGACAATCCTTCTCCCTGCCATGCTCGGGCATATTATATGCCTATCATAAAGTTAAATATTTTGTTCTTTGTTTACACGCAGTTTTTACCCGTTGTGGAAGGAACGGGCGTTGGGTCTCGAGAAAGGGAGCAAACTGAGAAAGTCCTGAACCGTCTAATATCTAAGAATTCACATGAGATACTAAACGTCAATAAGGTCGCTTTATCATACTTTTCTTTGTTTTGGTTTCAGCAACTGACATCTTTCTTCGTTGCTCCATGGTTGGAAATTTTGTCTAATGGTCTTCACTAATTATCCTGAGTATAGGCTGTGAACATGTACAATGTGAAAAGAGAAAAGAGGCGCAAACATGATGATAGAAAGCCTTCATCATCAACATCGAGCAAGTTGAAACCAAATAAGAAACTTCAGAAGAAGCCGCTGAAGAAGGGATCATCGAAGAAAGGACAGGCCAAATGAGGTTATTACCCTTTATAATGGTTGGTATTTTAAGTAAGAGTTCTTGTACTACACAATCTTTTTTATGGAAGAAATTTTGCATTTGGACTGATTATTGTAGTAATTATCTTCTCCATTCAAGGAATAGTGCCTCCCTTTCTCACACACTATCAGAAGACGAATATGTAGTTTTTTTTTCTTCTTTATAGGGATTGATCAGTTGGTTCCACCTTGTAGCAATCAAAGAAGTGATATTTCTGAGGGATATAGTCCAATCCAAATGATATTGTTATCCTTATTCCTTACTATATGAATATCTTATTGGTTAGATTGGCTAG

mRNA sequence

ATGGTTCTCTTGAATCGGCCGGTGATGGAGACGCCGCAGGAAGTTCAGGTCGACATTGGTCATCTAATGGCGTTCAATCCTCACCACCATTTCACTTCCCCGCCGTCCTCCAGGGAGGAGCTAGTGAATGAATGTCTACAGAAGGGTACAGAGCTAGTTCAAGCTATTGCTAATGAACTTTTCATCCTGCCTTCAACTGAAGATAGAGATGGTCCTCTAGTGAAGTTGTCTCAACCTAAAACAAAATTGCCCAGGGAGAAGCCTCTTCCGAAGCCTAAGGCTCCTACAAAATGGGAACTTTTTGCTAAAAAACGAGGTATAAAAAACAGGAAAAAAGATAAGATTCTGTATGATGAACAAACTCAAACATGGAAGCGTCGCCATGGTTATGATCGTGCAAATGATGAGGAGAACATACCCATCATTGAGGCCAAGATGACAGATGAGCCAGGCGTCGATCCCTTTGCTAAGAGGCAAGAAAATAAGAGGAAACGAGTTGAAAAGCAAGAAAATAATCGCTTACAGAATCTGAAACAAGCTGCAAAAGTTGGTGCTTTGCCAAGCCACGTTCAACTAGCTGCAACTGCTCTGCCCATAACCGGGACGCAAGCTACAACAAAGAAAATTACAAAAGACGAGCTTGGAAACGTGGCTGGAATGGCTGCAACCGCAACAGCTAGTGGTGGAAAATTCGACAAGAAGTTGCCTGGAGAAAAGCCTCCAAAGCATGAAGGAAAATATCGCAAGTTTTTACCCGTTGTGGAAGGAACGGGCGTTGGGTCTCGAGAAAGGGAGCAAACTGAGAAAGTCCTGAACCGTCTAATATCTAAGAATTCACATGAGATACTAAACGTCAATAAGGCTGTGAACATGTACAATGTGAAAAGAGAAAAGAGGCGCAAACATGATGATAGAAAGCCTTCATCATCAACATCGAGCAAGTTGAAACCAAATAAGAAACTTCAGAAGAAGCCGCTGAAGAAGGGATCATCGAAGAAAGGACAGGCCAAATGAGGTTATTACCCTTTATAATGGTTGGTATTTTAAGTAAGAGTTCTTGTACTACACAATCTTTTTTATGGAAGAAATTTTGCATTTGGACTGATTATTGTAGTAATTATCTTCTCCATTCAAGGAATAGTGCCTCCCTTTCTCACACACTATCAGAAGACGAATATGTAGTTTTTTTTTCTTCTTTATAGGGATTGATCAGTTGGTTCCACCTTGTAGCAATCAAAGAAGTGATATTTCTGAGGGATATAGTCCAATCCAAATGATATTGTTATCCTTATTCCTTACTATATGAATATCTTATTGGTTAGATTGGCTAG

Coding sequence (CDS)

ATGGTTCTCTTGAATCGGCCGGTGATGGAGACGCCGCAGGAAGTTCAGGTCGACATTGGTCATCTAATGGCGTTCAATCCTCACCACCATTTCACTTCCCCGCCGTCCTCCAGGGAGGAGCTAGTGAATGAATGTCTACAGAAGGGTACAGAGCTAGTTCAAGCTATTGCTAATGAACTTTTCATCCTGCCTTCAACTGAAGATAGAGATGGTCCTCTAGTGAAGTTGTCTCAACCTAAAACAAAATTGCCCAGGGAGAAGCCTCTTCCGAAGCCTAAGGCTCCTACAAAATGGGAACTTTTTGCTAAAAAACGAGGTATAAAAAACAGGAAAAAAGATAAGATTCTGTATGATGAACAAACTCAAACATGGAAGCGTCGCCATGGTTATGATCGTGCAAATGATGAGGAGAACATACCCATCATTGAGGCCAAGATGACAGATGAGCCAGGCGTCGATCCCTTTGCTAAGAGGCAAGAAAATAAGAGGAAACGAGTTGAAAAGCAAGAAAATAATCGCTTACAGAATCTGAAACAAGCTGCAAAAGTTGGTGCTTTGCCAAGCCACGTTCAACTAGCTGCAACTGCTCTGCCCATAACCGGGACGCAAGCTACAACAAAGAAAATTACAAAAGACGAGCTTGGAAACGTGGCTGGAATGGCTGCAACCGCAACAGCTAGTGGTGGAAAATTCGACAAGAAGTTGCCTGGAGAAAAGCCTCCAAAGCATGAAGGAAAATATCGCAAGTTTTTACCCGTTGTGGAAGGAACGGGCGTTGGGTCTCGAGAAAGGGAGCAAACTGAGAAAGTCCTGAACCGTCTAATATCTAAGAATTCACATGAGATACTAAACGTCAATAAGGCTGTGAACATGTACAATGTGAAAAGAGAAAAGAGGCGCAAACATGATGATAGAAAGCCTTCATCATCAACATCGAGCAAGTTGAAACCAAATAAGAAACTTCAGAAGAAGCCGCTGAAGAAGGGATCATCGAAGAAAGGACAGGCCAAATGA

Protein sequence

MVLLNRPVMETPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPSSSTSSKLKPNKKLQKKPLKKGSSKKGQAK

Homology

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BLAST of Cp4.1LG18g04940 vs. ExPASy Swiss-Prot
Match: Q9SH88 (Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 GN=At2g37990 PE=2 SV=2)

HSP 1 Score: 400.2 bits (1027), Expect = 2.3e-110
Identity = 211/320 (65.94%), Postives = 256/320 (80.00%), Query Frame = 0


Query: 9   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 68
           MET Q  QVD+G+L+AFNP+H F S PSSR ELV E L +GT+LVQ IAN+LF  PSTE 
Sbjct: 5   METEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTET 64

Query: 69  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 128
            DGP+V+L  P TKLPREK +P+PK PTKWE FA K+GI+ RKK+K+++DEQT  +KRRH
Sbjct: 65  NDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRH 124

Query: 129 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 188
           GYDR ND+ ++PIIEAK +DEPGVDPFAKR ++K+KRV KQE NRLQNLK A K GALPS
Sbjct: 125 GYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPS 184

Query: 189 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 248
           HVQLAAT+LPI+GT+A  KKI KDELG+VAG+AAT+TASGGKFDKKLPGEKPPK +GK+ 
Sbjct: 185 HVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHH 244

Query: 249 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS 308
           K+LPVV G G  + E+EQT  VL+++ SK+SHEILNV KA+NMYNVK+EK++        
Sbjct: 245 KYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKK-------- 304

Query: 309 SSTSSKLKPNKKLQKKPLKK 329
           S  S KLKP K + KKP  K
Sbjct: 305 SGRSDKLKPKKDITKKPANK 316

[Close]

BLAST of Cp4.1LG18g04940 vs. ExPASy Swiss-Prot
Match: Q15050 (Ribosome biogenesis regulatory protein homolog OS=Homo sapiens OX=9606 GN=RRS1 PE=1 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-30
Identity = 115/336 (34.23%), Postives = 178/336 (52.98%), Query Frame = 0


Query: 4   LNRPVMETPQEVQVDIGHLMAF--NPHHHFTSPPSSREELVNECLQKGTELVQAIANELF 63
           L R  +    E+Q D+G+L+A   NP         + E  +    +  T+L   + N+L+
Sbjct: 21  LQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARDNTQL---LINQLW 80

Query: 64  ILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQT 123
            LP+    +  + +L +P T+LPREKPLP+P+  T+W+ FA+ +GI+ +KK  +++DE +
Sbjct: 81  QLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVS 140

Query: 124 QTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAA 183
             W+RR GY RA D+    +IE     +P  D FAKR + K++RV K E NRL+NL +A 
Sbjct: 141 GQWRRRWGYQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAH 200

Query: 184 KVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPP 243
           K+  LPS     A  L  TG Q      +K+ELG    +A  +TAS G+F ++LP EK P
Sbjct: 201 KM-QLPS-----AAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKVP 260

Query: 244 KHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRK 303
           +  GK RKF P+    G  + E++   ++L  + SK     L+V +A N    + ++   
Sbjct: 261 RGSGKKRKFQPLF---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATNKQMREEDQEEA 320

Query: 304 HDDRKPSSSTSSK---LKPNKKLQKKPLKKGSSKKG 335
              RK S     K     P  K +  P  +G  +KG
Sbjct: 321 AKRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKG 336

[Close]

BLAST of Cp4.1LG18g04940 vs. ExPASy Swiss-Prot
Match: Q9CYH6 (Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-30
Identity = 113/336 (33.63%), Postives = 180/336 (53.57%), Query Frame = 0


Query: 4   LNRPVMETPQEVQVDIGHLMAF--NPHHHFTSPPSSREELVNECLQKGTELVQAIANELF 63
           L R  +    E++ D+G+L+A   NP         S E  +    +  T+L   + N+L+
Sbjct: 21  LQRITVHKELELEFDLGNLLASDRNPPTVLRQAGPSPEAELRALARDNTQL---LINQLW 80

Query: 64  ILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQT 123
            LP+    +  + +L +P T+LPREKPLP+P+  T+W+ FA+ +GI+ +KK  +++DE +
Sbjct: 81  RLPTERVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEAS 140

Query: 124 QTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAA 183
             W+RR GY RA D+    +IE   + +P  D FAKR + K++RV K E NRL+NL +A 
Sbjct: 141 GQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAH 200

Query: 184 KVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPP 243
           K+  +PS     +  L  TG Q      +K+ELG    +A  +TAS G+F ++LP EK P
Sbjct: 201 KM-QMPS-----SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAP 260

Query: 244 KHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRK 303
           +  GK RKF P+    G  + E++   ++L  + SK     L+V +A N    + ++   
Sbjct: 261 RGSGKKRKFQPLF---GDFAAEKKNQLELLRVMNSKKPR--LDVTRATNKQMREEDQEEA 320

Query: 304 HDDRKPSSSTSSK---LKPNKKLQKKPLKKGSSKKG 335
              RK S     K     P+ K +  P  +G  +KG
Sbjct: 321 AKRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKRKG 336

[Close]

BLAST of Cp4.1LG18g04940 vs. ExPASy Swiss-Prot
Match: A1A5P2 (Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus OX=10116 GN=Rrs1 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.1e-30
Identity = 112/336 (33.33%), Postives = 179/336 (53.27%), Query Frame = 0


Query: 4   LNRPVMETPQEVQVDIGHLMAF--NPHHHFTSPPSSREELVNECLQKGTELVQAIANELF 63
           L R  +    E++ D+G+L+A   NP         S E  +    +  T+L   + N+L+
Sbjct: 21  LQRITVHKELELEFDLGNLLASDRNPPTVLRQAGPSPEAELRALARDNTQL---LVNQLW 80

Query: 64  ILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQT 123
            LP+    +  + +L +P T+LPREKPLP+P+  T+W+ FA+ +GI+ +KK  +++DE +
Sbjct: 81  QLPTERVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVS 140

Query: 124 QTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAA 183
             W+RR GY RA D+    +IE   + +P  D FAKR   K++RV K E NRL+NL +A 
Sbjct: 141 GQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFAKRIRAKKERVAKNELNRLRNLARAH 200

Query: 184 KVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPP 243
           K+  +PS     +  L  TG Q      +K+ELG    +A  +TAS G+F ++LP EK P
Sbjct: 201 KM-QMPS-----SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAP 260

Query: 244 KHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRK 303
           +  GK RKF P+    G  + E++   ++L  + SK     L+V +A N    + ++   
Sbjct: 261 RGSGKKRKFQPLF---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATNKQMREEDQEEA 320

Query: 304 HDDRKPSSSTSSK---LKPNKKLQKKPLKKGSSKKG 335
              RK S     K     P+ + +  P  +G  +KG
Sbjct: 321 AKRRKMSQKGKKKGGRQGPSGRRKGGPPSQGEKRKG 336

[Close]

BLAST of Cp4.1LG18g04940 vs. ExPASy Swiss-Prot
Match: Q2KIH4 (Ribosome biogenesis regulatory protein homolog OS=Bos taurus OX=9913 GN=RRS1 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.6e-29
Identity = 107/323 (33.13%), Postives = 177/323 (54.80%), Query Frame = 0


Query: 14  EVQVDIGHLMAF--NPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTEDRDG 73
           E++ D+G+L+A   NP         ++E  +    +  T+L   + N+L+ LP+    + 
Sbjct: 31  ELEFDLGNLLASDRNPPTGLRHAGPTQEAELRALARDNTQL---LINQLWQLPTERVEEA 90

Query: 74  PLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRHGYD 133
            + +L +P T+LPREKP+P+P+  T+W+ FA+ +GI+ +KK  +++DE +  W+RR GY 
Sbjct: 91  LVARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGRWRRRWGYQ 150

Query: 134 RANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPSHVQ 193
           RA D+    +IE     +P  D FAKR + K++RV K E NRL+NL +A K+  LPS   
Sbjct: 151 RARDDTKEWLIEVPGNADPMEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLPS--- 210

Query: 194 LAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYRKFL 253
             A  +  TG Q      +K+ELG    +A  +TAS G+F ++LP EK P+  GK RKF 
Sbjct: 211 --AAGMHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQ 270

Query: 254 PVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPSSST 313
           P+    G  + ER+   ++L  + SK     +++ +A N     RE+ ++   ++   S 
Sbjct: 271 PLF---GDFAAERKSQLEMLRVMNSKKPQ--MDITRATN--KQMREEDQEEAAKRRKMSQ 330

Query: 314 SSKLKPNKKLQKKPLKKGSSKKG 335
             K K  ++      K G+  +G
Sbjct: 331 KGKRKGGRQGPGSKRKGGTPSQG 331

[Close]

BLAST of Cp4.1LG18g04940 vs. NCBI nr
Match: XP_023515967.1 (ribosome biogenesis regulatory protein homolog isoform X1 [Cucurbita pepo subsp. pepo] >XP_023515969.1 ribosome biogenesis regulatory protein homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 629 bits (1622), Expect = 1.05e-226
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0


Query: 9   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 68
           METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED
Sbjct: 1   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 69  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 128
           RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 129 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 188
           GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 189 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 248
           HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR
Sbjct: 181 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 249 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS 308
           KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS 300

Query: 309 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 337
           SSTSSKLKPNKKLQKKPLKKGSSKKGQAK
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of Cp4.1LG18g04940 vs. NCBI nr
Match: XP_022961058.1 (ribosome biogenesis regulatory protein homolog [Cucurbita moschata])

HSP 1 Score: 627 bits (1616), Expect = 8.63e-226
Identity = 327/329 (99.39%), Postives = 328/329 (99.70%), Query Frame = 0


Query: 9   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 68
           METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED
Sbjct: 1   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 69  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 128
           RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 129 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 188
           GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 189 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 248
           HVQLAATALPITGTQA TKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR
Sbjct: 181 HVQLAATALPITGTQAATKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 249 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS 308
           KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILN+NKAVNMYNVKREKRRKHDDRKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 309 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 337
           SSTSSKLKPNKKLQKKPLKKGSSKKGQAK
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of Cp4.1LG18g04940 vs. NCBI nr
Match: XP_022987784.1 (ribosome biogenesis regulatory protein homolog [Cucurbita maxima])

HSP 1 Score: 622 bits (1604), Expect = 5.82e-224
Identity = 324/329 (98.48%), Postives = 328/329 (99.70%), Query Frame = 0


Query: 9   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 68
           METPQEVQVDIGHLMAF+PHHHFTSPP +REELVNECLQKGTELVQAIANELFILPSTED
Sbjct: 1   METPQEVQVDIGHLMAFDPHHHFTSPPPTREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 69  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 128
           RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 129 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 188
           GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 189 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 248
           HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR
Sbjct: 181 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 249 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS 308
           KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILN+NKAVNMYNVKREKRRKHDDRKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 309 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 337
           SSTSSKLKPNKKLQKKPLKKGSSKKG+AK
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGKAK 329

[Close]

BLAST of Cp4.1LG18g04940 vs. NCBI nr
Match: KAG6589856.1 (Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 621 bits (1602), Expect = 1.17e-223
Identity = 325/329 (98.78%), Postives = 327/329 (99.39%), Query Frame = 0


Query: 9   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 68
           METPQEV VDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED
Sbjct: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 69  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 128
           RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 129 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 188
           GYDRANDEENIPIIEAKMTDEPGVDPFAKR+ENKRKRVEKQENNRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 189 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 248
           HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR
Sbjct: 181 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 249 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS 308
           KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILN+NKAVNMYNVKREKRRKHDDRKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 309 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 337
           SSTSSKLK NKKLQKKPLKKGSSKKGQAK
Sbjct: 301 SSTSSKLKANKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of Cp4.1LG18g04940 vs. NCBI nr
Match: KAG7023528.1 (Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 594 bits (1532), Expect = 7.61e-213
Identity = 318/338 (94.08%), Postives = 322/338 (95.27%), Query Frame = 0


Query: 9   METPQEVQVDIGHLMAFNPHHHFTSPPSSR-------EELVNEC--LQKGTELVQAIANE 68
           METPQEV VDIGHLMAFNPHHHFTSPPSSR       + +V     L KGTELVQAIANE
Sbjct: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSRLASSPSGKSIVQTTFTLPKGTELVQAIANE 60

Query: 69  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 128
           LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE
Sbjct: 61  LFILPSTEDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDE 120

Query: 129 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQ 188
           QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKR+ENKRKRVEKQENNRLQNLKQ
Sbjct: 121 QTQTWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQ 180

Query: 189 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 248
           AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK
Sbjct: 181 AAKVGALPSHVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEK 240

Query: 249 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKR 308
           PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILN+NKAVNMYNVKREKR
Sbjct: 241 PPKHEGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKR 300

Query: 309 RKHDDRKPSSSTSSKLKPNKKLQKKPLKKGSSKKGQAK 337
           RKHDDRKPSSSTSSKLK NKKLQKKPLKKGSSKKGQAK
Sbjct: 301 RKHDDRKPSSSTSSKLKANKKLQKKPLKKGSSKKGQAK 338

[Close]

BLAST of Cp4.1LG18g04940 vs. ExPASy TrEMBL
Match: A0A6J1HAS5 (Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC111461680 PE=3 SV=1)

HSP 1 Score: 627 bits (1616), Expect = 4.18e-226
Identity = 327/329 (99.39%), Postives = 328/329 (99.70%), Query Frame = 0


Query: 9   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 68
           METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED
Sbjct: 1   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 69  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 128
           RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 129 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 188
           GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 189 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 248
           HVQLAATALPITGTQA TKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR
Sbjct: 181 HVQLAATALPITGTQAATKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 249 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS 308
           KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILN+NKAVNMYNVKREKRRKHDDRKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 309 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 337
           SSTSSKLKPNKKLQKKPLKKGSSKKGQAK
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of Cp4.1LG18g04940 vs. ExPASy TrEMBL
Match: A0A6J1JJT9 (Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC111485227 PE=3 SV=1)

HSP 1 Score: 622 bits (1604), Expect = 2.82e-224
Identity = 324/329 (98.48%), Postives = 328/329 (99.70%), Query Frame = 0


Query: 9   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 68
           METPQEVQVDIGHLMAF+PHHHFTSPP +REELVNECLQKGTELVQAIANELFILPSTED
Sbjct: 1   METPQEVQVDIGHLMAFDPHHHFTSPPPTREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 69  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 128
           RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 129 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 188
           GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 189 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 248
           HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR
Sbjct: 181 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 249 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS 308
           KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILN+NKAVNMYNVKREKRRKHDDRKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 309 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 337
           SSTSSKLKPNKKLQKKPLKKGSSKKG+AK
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGKAK 329

[Close]

BLAST of Cp4.1LG18g04940 vs. ExPASy TrEMBL
Match: A0A6J1CSP0 (Ribosome biogenesis regulatory protein OS=Momordica charantia OX=3673 GN=LOC111014399 PE=3 SV=1)

HSP 1 Score: 563 bits (1452), Expect = 3.92e-201
Identity = 296/329 (89.97%), Postives = 309/329 (93.92%), Query Frame = 0


Query: 9   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 68
           ME  Q++QVD+GHLMAFNPHHH TSPPSSREELVNECLQKGTELVQAIANELFILPSTED
Sbjct: 1   MENQQQLQVDLGHLMAFNPHHHLTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 69  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 128
           RDGPLV+L  PKT+LPREK LPKPK PTKWELFAKKRGIKNRKKDKI YDEQTQTWKRRH
Sbjct: 61  RDGPLVRLPPPKTRLPREKHLPKPKPPTKWELFAKKRGIKNRKKDKIAYDEQTQTWKRRH 120

Query: 129 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 188
           GYDRANDEENIPIIEAKMTDEPG+DPFA+RQ NKRKRVEKQENNRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERQSNKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 189 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 248
           HVQLAATALPITGTQ   KK+TKDELGNVAGMAATATASGGKFD+KL GEKPPKH+GKYR
Sbjct: 181 HVQLAATALPITGTQVAPKKMTKDELGNVAGMAATATASGGKFDRKLRGEKPPKHKGKYR 240

Query: 249 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS 308
           KFLPVVEGTGVGSREREQTE VLNRLISKNSHEILNVNKA+NMYNVKREKRRKHD  KPS
Sbjct: 241 KFLPVVEGTGVGSREREQTENVLNRLISKNSHEILNVNKAINMYNVKREKRRKHDG-KPS 300

Query: 309 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 337
           SSTSSKLKPNKK QKK +KKG S KG+AK
Sbjct: 301 SSTSSKLKPNKKPQKKSMKKGVSNKGKAK 328

[Close]

BLAST of Cp4.1LG18g04940 vs. ExPASy TrEMBL
Match: A0A6J1HW20 (Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC111467179 PE=3 SV=1)

HSP 1 Score: 518 bits (1335), Expect = 2.88e-183
Identity = 271/329 (82.37%), Postives = 298/329 (90.58%), Query Frame = 0


Query: 9   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 68
           ME  Q  Q+D+G+LMAFNPHH F S  SSRE+LV+ECLQKG EL Q IAN+LF LPSTED
Sbjct: 3   MENQQPFQIDLGNLMAFNPHHKFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTED 62

Query: 69  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 128
           RDGPLV+L  P T+LPREKPLPKPK PTKWELFAKKRGIKNRKKDKI+YD+QT +WKRRH
Sbjct: 63  RDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRH 122

Query: 129 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 188
           GYDRANDEENIPIIEAKMTDEPGVDPFA R+ NK+ RVEKQE N+LQNLKQAAKVGALPS
Sbjct: 123 GYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGALPS 182

Query: 189 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 248
           HVQLAATALPITGTQA  KKITKDELGNVAGMAAT+TASGGKFDKKL GEKP KH+GKYR
Sbjct: 183 HVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYR 242

Query: 249 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS 308
           KFLPVVEGTG+GS+EREQTEKVLNRLISKNSHEILN+NKAVNMYNVK+EK++++   K S
Sbjct: 243 KFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGKSS 302

Query: 309 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 337
           S +S+KLKPNKKLQKKPLKKGSSK G+AK
Sbjct: 303 SMSSNKLKPNKKLQKKPLKKGSSKNGKAK 331

[Close]

BLAST of Cp4.1LG18g04940 vs. ExPASy TrEMBL
Match: A0A6J1F066 (Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC111440969 PE=3 SV=1)

HSP 1 Score: 518 bits (1333), Expect = 5.80e-183
Identity = 270/329 (82.07%), Postives = 298/329 (90.58%), Query Frame = 0


Query: 9   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 68
           ME  Q  Q+D+G+LMAFNPHH + S  SSRE+LV+ECLQKG EL Q IAN+LF LPSTED
Sbjct: 3   MENQQPFQIDLGNLMAFNPHHQYPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTED 62

Query: 69  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 128
           RDGPLV+L  P T+LPREKPLPKPK PTKWELFAKKRGIKNRKKDKI+YD+QT +WKRRH
Sbjct: 63  RDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRH 122

Query: 129 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 188
           GYDRANDEENIPIIEAKMTDEPGVDPFA R+ NK+ RVEKQE N+LQNLKQAAKVGALPS
Sbjct: 123 GYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGALPS 182

Query: 189 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 248
           HVQLAATALPITGTQA  KKITKDELGNVAGMAAT+TASGGKFDKKL GEKP KH+GKYR
Sbjct: 183 HVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYR 242

Query: 249 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS 308
           KFLPVVEGTG+GS+EREQTEKVLNRLISKNSHEILN+NKAVNMYNVK+EK++++   K S
Sbjct: 243 KFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGKSS 302

Query: 309 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 337
           S +S+KLKPNKKLQKKPLKKGSSK G+AK
Sbjct: 303 SMSSNKLKPNKKLQKKPLKKGSSKNGKAK 331

[Close]

BLAST of Cp4.1LG18g04940 vs. TAIR 10
Match: AT2G37990.1 (ribosome biogenesis regulatory protein (RRS1) family protein )

HSP 1 Score: 400.2 bits (1027), Expect = 1.6e-111
Identity = 211/320 (65.94%), Postives = 256/320 (80.00%), Query Frame = 0


Query: 9   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 68
           MET Q  QVD+G+L+AFNP+H F S PSSR ELV E L +GT+LVQ IAN+LF  PSTE 
Sbjct: 5   METEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTET 64

Query: 69  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 128
            DGP+V+L  P TKLPREK +P+PK PTKWE FA K+GI+ RKK+K+++DEQT  +KRRH
Sbjct: 65  NDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRH 124

Query: 129 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 188
           GYDR ND+ ++PIIEAK +DEPGVDPFAKR ++K+KRV KQE NRLQNLK A K GALPS
Sbjct: 125 GYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPS 184

Query: 189 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 248
           HVQLAAT+LPI+GT+A  KKI KDELG+VAG+AAT+TASGGKFDKKLPGEKPPK +GK+ 
Sbjct: 185 HVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHH 244

Query: 249 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS 308
           K+LPVV G G  + E+EQT  VL+++ SK+SHEILNV KA+NMYNVK+EK++        
Sbjct: 245 KYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKK-------- 304

Query: 309 SSTSSKLKPNKKLQKKPLKK 329
           S  S KLKP K + KKP  K
Sbjct: 305 SGRSDKLKPKKDITKKPANK 316

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g04940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SH88	2.3e-110	65.94	Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 G...	[more]
Q15050	1.1e-30	34.23	Ribosome biogenesis regulatory protein homolog OS=Homo sapiens OX=9606 GN=RRS1 P...	[more]
Q9CYH6	1.1e-30	33.63	Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 ...	[more]
A1A5P2	3.1e-30	33.33	Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus OX=10116 GN=...	[more]
Q2KIH4	2.6e-29	33.13	Ribosome biogenesis regulatory protein homolog OS=Bos taurus OX=9913 GN=RRS1 PE=...	[more]

BLAST of Cp4.1LG18g04940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515967.1	1.05e-226	100.00	ribosome biogenesis regulatory protein homolog isoform X1 [Cucurbita pepo subsp....	[more]
XP_022961058.1	8.63e-226	99.39	ribosome biogenesis regulatory protein homolog [Cucurbita moschata]	[more]
XP_022987784.1	5.82e-224	98.48	ribosome biogenesis regulatory protein homolog [Cucurbita maxima]	[more]
KAG6589856.1	1.17e-223	98.78	Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosp...	[more]
KAG7023528.1	7.61e-213	94.08	Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosp...	[more]

BLAST of Cp4.1LG18g04940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAS5	4.18e-226	99.39	Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1JJT9	2.82e-224	98.48	Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC1114852...	[more]
A0A6J1CSP0	3.92e-201	89.97	Ribosome biogenesis regulatory protein OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1HW20	2.88e-183	82.37	Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC1114671...	[more]
A0A6J1F066	5.80e-183	82.07	Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]

BLAST of Cp4.1LG18g04940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37990.1	1.6e-111	65.94	ribosome biogenesis regulatory protein (RRS1) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 157..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 292..310
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 317..337
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..337
None	No IPR available	PANTHER	PTHR17602:SF5	RIBOSOME BIOGENESIS REGULATORY PROTEIN	coord: 9..326
IPR007023	Ribosomal biogenesis regulatory protein	PFAM	PF04939	RRS1	coord: 15..177 e-value: 8.2E-51 score: 172.1
IPR007023	Ribosomal biogenesis regulatory protein	PANTHER	PTHR17602	RIBOSOME BIOGENESIS REGULATORY PROTEIN	coord: 9..326

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g04940.1	Cp4.1LG18g04940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0000055	ribosomal large subunit export from nucleus
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
cellular_component	GO:0005634	nucleus