Cp4.1LG18g04920 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g04920
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRibosomal protein
LocationCp4.1LG18: 5745940 .. 5748308 (+)
RNA-Seq ExpressionCp4.1LG18g04920
SyntenyCp4.1LG18g04920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTAATAATTTATTTCACCAATCCAAGGTATTGCGTTCATCTTAGCTTTACGCCGTCGCTCCCGATTCCTAGGTATTTGGCTAAGAACTCGTTCATCTTCTAGGTTAAGCTTTGCCTCAGATTGGAGTTACTGAAGCGTCTTTTCATGTTCATTGTCAAATTTTTAGGGTTTTGTATCGATATCTGTTTTAACAATTTTCAGCATCAGTGACAATCGTGGGATAAGGATCTAATTTCTGTGAATCAATTCGGAAATTTCTAGTTTAACTTCTATTGTACAGCTATTTCCCAGGCTTCTTGCTGTAAAATTTATGCAAATGTTGATTGTTTCGATTAACCTTGTCCGAGTTTTGGATTTTGAATAGTTGAGGAAGAATTTTTTATTGGGTTAATGCTGTTAAATCTTGGTATTTGATAATGAGATTGGAAGTCGGGAGGGGGGAGGTTGAGGGGAGCTCATTGGTTTGGCCATTTTCTACGAGCATTTTCAGTGTTTCATTTCTATTTTTCTGCATGTCACTACGTTTCATTTCTTTGTTTTATGTTTGTGTTTTGTTCCTCCAGCCATGAAAGTACGTGCTTCAGTGAAGAAGATGTGCGAGTTTTGTAGGACAGTGAAGCGTCGAGGTCGAGTGTATGTATACTGCTGATCCAATCCCAAACACAAGCAACGCCAATGCCTATCAACATCTGCTAGTGAATGACCTTCTCCCCACCTGTGAGTATTTCCCTTTCCTTTGATTTGGGCATTGTCAGTTCTTAGTCTTTGAATGCATATTTCATCCGTTTATCCGTTAAGATGGAAAAGTTTGAAGAATTATGCCTTTTGCCATTGAGGAGAGTTGTTGCATAACTCAAGATAAGGACTGACGATTTACTACATAGGGGCATTGCATGAGTGTGTTAGGGACACATACCTCCATTATGGTATGATATTACCCATTTTGAGTATAAACTCTCATGATATTACTTTTGGTTTTCCCAAAATGTCTCATACCAATGGAGATGTATTCCTTACTTATAAACTCATGATCATCCTCTTAATTAACCAACGTGGGACCCTCGAACAAAATACACCGTAAAACCTCTTTTGAGGCCTATGAAGCCCTCGAATAACTTCTCCTTAATTGAGGTTTGACTCCTTCTCTAGAGCCCTTGAACAAAATACATCTTCTGTTCGACACTTAGTCACTTTTGACTACACATTTGAGGCTCACAACTTTTTTGTTCGACACTTAAGGATTCTATTGAAATGACTAAGTTAAGGGTATGACTCTGATACCATGTTAGGAACCACAAACCTCTACAATGGTATGATATTGTCTACTTTGAGCATAAGGTCTCATGCCAATAGAAATATATTTTTTACTTATAAACCCATGATCATTCTCTTAATCAGCAAATGTGAGACTCCCTCCCTACCATCATCAACCGAATGGAGTTATGCACTTATGTAAACAAAAATGGACATAACTCCTACATCAAATTGTAGAACTTTGCTATTTCTTGAGTACCGAAAAGTATGTTGCCTTTTATTTTCGTATAAAGATGATGTTGAGGCCAGATTCCTTAAATTTATCACTTGCAAGTCTTCTTCCAGTTTCATTCTCTACCATGCAGCTAGAGATTAGTTTTGGGGATTGTTGGAAGTCATTTTTTCATTCCTCATTACTTGGGACTTATTAACACATCCATATGTAGGATGATGGTATTCAGGTTTTTACTTGGGACTAATCACATGATTCTTGTAGCTAATTGCATCAAACGTGACCCGCCTTTTCAGGTTCCCAAGTAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCACGAACAGGTCTGGCTTCTCTCCTCCCCCAAAAGCATGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCCGGCTTCAATCCTGTTGAAGAAACACAATTAGCTGAAGTCCACGATCACAAACATCTCGATTTCTGAGAGCCACGAAAATTTCTACAATTTGATTCTGCTCCTTCTAACAAGAAAAAAGCTCAGCTGCTCTGAGTTTTGTTCTGTTTGAGTTGGTTTTGATATTTAGACTGGCAGGACGAGCTGTTACATTGAGCCGTCGATCATTTTCATTTTCAGCTTCTGAAAAGTGGCGGCAGAACTGAACTGCGCCCTGTACTATCAACATGACTTGCAATCCTTAATTTTCTTTTAAATAATCCTCAAATCCATCAACATATGATGAATCAATTTGTATGCTAACAAGTTAAGAAAAGTTTGAATTCTATTTTAGTCTCATTTGCCATATCTATTTCAATTCTAACTTACTTTTTTAGTGGATTAGGTTTAAATATAGATCATTGTCAAGTTTAAATGTATACAGATTTCT

mRNA sequence

TCTAATAATTTATTTCACCAATCCAAGGTATTGCGTTCATCTTAGCTTTACGCCGTCGCTCCCGATTCCTAGCCATGAAAGTACGTGCTTCAGTGAAGAAGATGTGCGAGTTTTGTAGGACAGTGAAGCGTCGAGGTCGAGTGTTCCCAAGTAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCACGAACAGGTCTGGCTTCTCTCCTCCCCCAAAAGCATGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCCGGCTTCAATCCTGTTGAAGAAACACAATTAGCTGAAGTCCACGATCACAAACATCTCGATTTCTGAGAGCCACGAAAATTTCTACAATTTGATTCTGCTCCTTCTAACAAGAAAAAAGCTCAGCTGCTCTGAGTTTTGTTCTGTTTGAGTTGGTTTTGATATTTAGACTGGCAGGACGAGCTGTTACATTGAGCCGTCGATCATTTTCATTTTCAGCTTCTGAAAAGTGGCGGCAGAACTGAACTGCGCCCTGTACTATCAACATGACTTGCAATCCTTAATTTTCTTTTAAATAATCCTCAAATCCATCAACATATGATGAATCAATTTGTATGCTAACAAGTTAAGAAAAGTTTGAATTCTATTTTAGTCTCATTTGCCATATCTATTTCAATTCTAACTTACTTTTTTAGTGGATTAGGTTTAAATATAGATCATTGTCAAGTTTAAATGTATACAGATTTCT

Coding sequence (CDS)

ATGAAAGTACGTGCTTCAGTGAAGAAGATGTGCGAGTTTTGTAGGACAGTGAAGCGTCGAGGTCGAGTGTTCCCAAGTAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCACGAACAGGTCTGGCTTCTCTCCTCCCCCAAAAGCATGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCCGGCTTCAATCCTGTTGAAGAAACACAATTAG

Protein sequence

MKVRASVKKMCEFCRTVKRRGRVFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLFGWRMGPASILLKKHN
Homology
[Close]
BLAST of Cp4.1LG18g04920 vs. NCBI nr
Match: XP_022987917.1 (uncharacterized protein LOC111485318 [Cucurbita maxima])

HSP 1 Score: 127 bits (320), Expect = 2.13e-36
Identity = 71/100 (71.00%), Postives = 71/100 (71.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVKRRGRV----------------------------FPSSEVKQE 60
           MKVRASVKKMCEFCRTVKRRGRV                            FPSSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGPASILLKKHN 72
           ILPSHSSRTGLASLLPQKHEPTMLFGWRMG ASILLKKHN
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGLASILLKKHN 100

[Close]
BLAST of Cp4.1LG18g04920 vs. NCBI nr
Match: XP_022960589.1 (uncharacterized protein LOC111461324 [Cucurbita moschata])

HSP 1 Score: 125 bits (314), Expect = 1.75e-35
Identity = 70/100 (70.00%), Postives = 70/100 (70.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVKRRGRV----------------------------FPSSEVKQE 60
           MKVRASVKKMCEFCRTVKRRGRV                            FPSSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGPASILLKKHN 72
           ILPSHSSRTGLASLLPQKHEPTML GWRMG ASILLKKHN
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 100

[Close]
BLAST of Cp4.1LG18g04920 vs. NCBI nr
Match: KAG7023520.1 (rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125 bits (314), Expect = 1.75e-35
Identity = 70/100 (70.00%), Postives = 70/100 (70.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVKRRGRV----------------------------FPSSEVKQE 60
           MKVRASVKKMCEFCRTVKRRGRV                            FPSSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGPASILLKKHN 72
           ILPSHSSRTGLASLLPQKHEPTML GWRMG ASILLKKHN
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 100

[Close]
BLAST of Cp4.1LG18g04920 vs. NCBI nr
Match: XP_038879717.1 (uncharacterized protein LOC120071478 [Benincasa hispida])

HSP 1 Score: 115 bits (289), Expect = 1.13e-31
Identity = 65/100 (65.00%), Postives = 67/100 (67.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVKRRGRV----------------------------FPSSEVKQE 60
           MKVRASVKKMCEFCRTVKRRGRV                            F  SEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPPPSLFSRSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGPASILLKKHN 72
           +LPSHSSRTGLASL+PQKHEPTML GWRMG ASILLKK N
Sbjct: 61  LLPSHSSRTGLASLIPQKHEPTMLLGWRMGLASILLKKRN 100

[Close]
BLAST of Cp4.1LG18g04920 vs. NCBI nr
Match: XP_022933442.1 (uncharacterized protein LOC111440855 [Cucurbita moschata] >XP_023531008.1 uncharacterized protein LOC111793393 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115 bits (288), Expect = 1.61e-31
Identity = 65/100 (65.00%), Postives = 67/100 (67.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVKRRGRV----------------------------FPSSEVKQE 60
           MKVRASVKKMCEFCRTV+RRGRV                            F  SEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGPASILLKKHN 72
           ILPSHSSRTGLASL+PQKHEPTMLFGWRMG ASIL KK N
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]
BLAST of Cp4.1LG18g04920 vs. ExPASy TrEMBL
Match: A0A6J1JBN8 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111485318 PE=3 SV=1)

HSP 1 Score: 127 bits (320), Expect = 1.03e-36
Identity = 71/100 (71.00%), Postives = 71/100 (71.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVKRRGRV----------------------------FPSSEVKQE 60
           MKVRASVKKMCEFCRTVKRRGRV                            FPSSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGPASILLKKHN 72
           ILPSHSSRTGLASLLPQKHEPTMLFGWRMG ASILLKKHN
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGLASILLKKHN 100

[Close]
BLAST of Cp4.1LG18g04920 vs. ExPASy TrEMBL
Match: A0A6J1HBF8 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111461324 PE=3 SV=1)

HSP 1 Score: 125 bits (314), Expect = 8.48e-36
Identity = 70/100 (70.00%), Postives = 70/100 (70.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVKRRGRV----------------------------FPSSEVKQE 60
           MKVRASVKKMCEFCRTVKRRGRV                            FPSSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGPASILLKKHN 72
           ILPSHSSRTGLASLLPQKHEPTML GWRMG ASILLKKHN
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 100

[Close]
BLAST of Cp4.1LG18g04920 vs. ExPASy TrEMBL
Match: A0A6J1EZS5 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111440855 PE=3 SV=1)

HSP 1 Score: 115 bits (288), Expect = 7.79e-32
Identity = 65/100 (65.00%), Postives = 67/100 (67.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVKRRGRV----------------------------FPSSEVKQE 60
           MKVRASVKKMCEFCRTV+RRGRV                            F  SEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGPASILLKKHN 72
           ILPSHSSRTGLASL+PQKHEPTMLFGWRMG ASIL KK N
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]
BLAST of Cp4.1LG18g04920 vs. ExPASy TrEMBL
Match: A0A6J1CT08 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111014487 PE=3 SV=1)

HSP 1 Score: 113 bits (283), Expect = 4.50e-31
Identity = 63/100 (63.00%), Postives = 67/100 (67.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVKRRGRV----------------------------FPSSEVKQE 60
           MKVR+SVKKMCEFCRTVKRRGRV                            F  SEVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPPLFSRSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGPASILLKKHN 72
           ILPS+S RTGLASL+PQKHEPT +FGWRMG ASILLKKHN
Sbjct: 61  ILPSYSPRTGLASLIPQKHEPTTMFGWRMGLASILLKKHN 100

[Close]
BLAST of Cp4.1LG18g04920 vs. ExPASy TrEMBL
Match: A0A6J1I4R0 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111470644 PE=3 SV=1)

HSP 1 Score: 112 bits (281), Expect = 9.08e-31
Identity = 63/100 (63.00%), Postives = 67/100 (67.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVKRRGRV----------------------------FPSSEVKQE 60
           MKVRASVKKMCEFCRTV+RRGRV                            F  SEVK++
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSSNPKHKQRQGLSTFASEAPSPSLFSRSEVKEK 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGPASILLKKHN 72
           ILPSHSSRTGLASL+PQKHEPTMLFGWRMG ASIL KK N
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]
BLAST of Cp4.1LG18g04920 vs. TAIR 10
Match: AT5G20180.1 (Ribosomal protein L36 )

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-12
Identity = 45/103 (43.69%), Postives = 51/103 (49.51%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVKRRGRV-----------------------------FPSSEVKQ 60
           MKVR+SVKKMCEFC+TVKRRGRV                             F      Q
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 61  EI--LPSHSSRTGLASLLPQKHEPTMLFGWRMGPASILLKKHN 73
           E+  LP      GLASLL ++  PT  FGWR G ASIL K+ N
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103

[Close]
BLAST of Cp4.1LG18g04920 vs. TAIR 10
Match: AT5G20180.2 (Ribosomal protein L36 )

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-12
Identity = 45/103 (43.69%), Postives = 51/103 (49.51%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVKRRGRV-----------------------------FPSSEVKQ 60
           MKVR+SVKKMCEFC+TVKRRGRV                             F      Q
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 61  EI--LPSHSSRTGLASLLPQKHEPTMLFGWRMGPASILLKKHN 73
           E+  LP      GLASLL ++  PT  FGWR G ASIL K+ N
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g04920 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g04920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022987917.12.13e-3671.00uncharacterized protein LOC111485318 [Cucurbita maxima][more]
XP_022960589.11.75e-3570.00uncharacterized protein LOC111461324 [Cucurbita moschata][more]
KAG7023520.11.75e-3570.00rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038879717.11.13e-3165.00uncharacterized protein LOC120071478 [Benincasa hispida][more]
XP_022933442.11.61e-3165.00uncharacterized protein LOC111440855 [Cucurbita moschata] >XP_023531008.1 unchar... [more]
BLAST of Cp4.1LG18g04920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JBN81.03e-3671.00Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111485318 PE=3 SV=1[more]
A0A6J1HBF88.48e-3670.00Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111461324 PE=3 SV=1[more]
A0A6J1EZS57.79e-3265.00Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111440855 PE=3 SV=1[more]
A0A6J1CT084.50e-3163.00Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111014487 PE=3 SV=1[more]
A0A6J1I4R09.08e-3163.00Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111470644 PE=3 SV=1[more]
BLAST of Cp4.1LG18g04920 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G20180.11.1e-1243.69Ribosomal protein L36 [more]
AT5G20180.21.1e-1243.69Ribosomal protein L36 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000473Ribosomal protein L36PFAMPF00444Ribosomal_L36coord: 1..24
e-value: 5.4E-9
score: 36.1
IPR000473Ribosomal protein L36TIGRFAMTIGR01022TIGR01022coord: 1..23
e-value: 5.2E-9
score: 34.1
NoneNo IPR availablePANTHERPTHR18804FAMILY NOT NAMEDcoord: 27..71
coord: 1..24
NoneNo IPR availablePANTHERPTHR18804:SF16RIBOSOMAL PROTEINcoord: 1..24
NoneNo IPR availablePANTHERPTHR18804:SF16RIBOSOMAL PROTEINcoord: 27..71
IPR035977Ribosomal protein L36 superfamilySUPERFAMILY57840Ribosomal protein L36coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g04920.1Cp4.1LG18g04920.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome