Cp4.1LG18g04810 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g04810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG18: 5666893 .. 5667721 (-)
RNA-Seq ExpressionCp4.1LG18g04810
SyntenyCp4.1LG18g04810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACTTCTGCTCCTTCACTGGTACTTTCACCCACCTCTCCTTCTTCCGACCCGCCTTATAGGCTCCTTCAAGATCATCCATCTCTCAAGCTTATCTCCAAATGCCGAAGCATTCGAACTCTCAGACAAATCCACGCTCAGATCATCAAGACTGGCCTCCACAACACTCAGTTTGCCCTCAGCAAGCTCATCGAGTTTTCCGCTGTTTCGCGCTATGCTGATATCTCTTATGCTGTTTCTCTATTTAATTCCATTGAAGAGCCCAATTTATTCATTTGGAATTCGATGATTCGAGGGCTTTCGATTAGTCTATCGCCCGTTCTGGCCTTGGTTTTCTTTGTCAGAATGATTCATGCCGGGGTAGAGCCGAATTCTTACACTTTTCCTTTTCTTTTGAAGTCTTGTGCTAAGCTTGCCTCTGCCCGTGAAGGGAAACAGATTCATGCGCATGTTTTGAAGCTTGGGTTCGTGTCTGATGTGTTCATTCATACTTCGCTTATCAATATGTATGCGCAGAGCGGTGAAATAAATTATGCCCAATTGGTTTTTGATCAAAGTAATTTCAGGGATGCAATTTCTTTCACTGCATTAATCGCTGGTTATGTGTTGTGGGGTTATATGGATCGCGCTCGGAAACTGTTCGATGAAATGCCTGTTAGAGATGTGGTGTCTTGGAATGCTATGATTGCTGGATATGCACAAACTGGTAGATCCAAAGAGGCGTTGTTGTTGTTTGAAGAAATGAGGAAAGCAAATGTCCCCCCAAATGAGAGTACTATTGTCTCCGTTCTTTCTGCTTGTGCTCAGTCAAATGCTCTGGATTTAG

mRNA sequence

ATGGCGACTTCTGCTCCTTCACTGGTACTTTCACCCACCTCTCCTTCTTCCGACCCGCCTTATAGGCTCCTTCAAGATCATCCATCTCTCAAGCTTATCTCCAAATGCCGAAGCATTCGAACTCTCAGACAAATCCACGCTCAGATCATCAAGACTGGCCTCCACAACACTCAGTTTGCCCTCAGCAAGCTCATCGAGTTTTCCGCTGTTTCGCGCTATGCTGATATCTCTTATGCTGTTTCTCTATTTAATTCCATTGAAGAGCCCAATTTATTCATTTGGAATTCGATGATTCGAGGGCTTTCGATTAGTCTATCGCCCGTTCTGGCCTTGGTTTTCTTTGTCAGAATGATTCATGCCGGGGTAGAGCCGAATTCTTACACTTTTCCTTTTCTTTTGAAGTCTTGTGCTAAGCTTGCCTCTGCCCGTGAAGGGAAACAGATTCATGCGCATGTTTTGAAGCTTGGGTTCGTGTCTGATGTGTTCATTCATACTTCGCTTATCAATATTCAAATGCTCTGGATTTAG

Coding sequence (CDS)

ATGGCGACTTCTGCTCCTTCACTGGTACTTTCACCCACCTCTCCTTCTTCCGACCCGCCTTATAGGCTCCTTCAAGATCATCCATCTCTCAAGCTTATCTCCAAATGCCGAAGCATTCGAACTCTCAGACAAATCCACGCTCAGATCATCAAGACTGGCCTCCACAACACTCAGTTTGCCCTCAGCAAGCTCATCGAGTTTTCCGCTGTTTCGCGCTATGCTGATATCTCTTATGCTGTTTCTCTATTTAATTCCATTGAAGAGCCCAATTTATTCATTTGGAATTCGATGATTCGAGGGCTTTCGATTAGTCTATCGCCCGTTCTGGCCTTGGTTTTCTTTGTCAGAATGATTCATGCCGGGGTAGAGCCGAATTCTTACACTTTTCCTTTTCTTTTGAAGTCTTGTGCTAAGCTTGCCTCTGCCCGTGAAGGGAAACAGATTCATGCGCATGTTTTGAAGCTTGGGTTCGTGTCTGATGTGTTCATTCATACTTCGCTTATCAATATTCAAATGCTCTGGATTTAG

Protein sequence

MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFALSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHAGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLINIQMLWI
Homology
BLAST of Cp4.1LG18g04810 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.7e-45
Identity = 94/177 (53.11%), Postives = 129/177 (72.88%), Query Frame = 0

Query: 1   MATSAPSLVLSPTSP------SSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGL 60
           M + +P  V S + P      SSDPPY  +++HPSL L+  C+++++LR IHAQ+IK GL
Sbjct: 2   MLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGL 61

Query: 61  HNTQFALSKLIEFSAVS-RYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVF 120
           HNT +ALSKLIEF  +S  +  + YA+S+F +I+EPNL IWN+M RG ++S  PV AL  
Sbjct: 62  HNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKL 121

Query: 121 FVRMIHAGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLINI 171
           +V MI  G+ PNSYTFPF+LKSCAK  + +EG+QIH HVLKLG   D+++HTSLI++
Sbjct: 122 YVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISM 178

BLAST of Cp4.1LG18g04810 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-24
Identity = 56/144 (38.89%), Postives = 90/144 (62.50%), Query Frame = 0

Query: 27  HPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFALSKLIEFSAVSRYAD-ISYAVSLFNS 86
           + ++  + +C     L+QIHA+++KTGL    +A++K + F   S  +D + YA  +F+ 
Sbjct: 15  YETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDG 74

Query: 87  IEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHAGVEPNSYTFPFLLKSCAKLASAREG 146
            + P+ F+WN MIRG S S  P  +L+ + RM+ +    N+YTFP LLK+C+ L++  E 
Sbjct: 75  FDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEET 134

Query: 147 KQIHAHVLKLGFVSDVFIHTSLIN 170
            QIHA + KLG+ +DV+   SLIN
Sbjct: 135 TQIHAQITKLGYENDVYAVNSLIN 158

BLAST of Cp4.1LG18g04810 vs. ExPASy Swiss-Prot
Match: Q9C6T2 (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-23
Identity = 60/148 (40.54%), Postives = 95/148 (64.19%), Query Frame = 0

Query: 25  QDHPSLKLISKCRSIRTLRQIHAQIIKTGL-HNTQFALSKLIEFSAVSRYAD-ISYAVSL 84
           ++   L L+ +C +I   +Q+HA+ IK  L +++ F+ S ++   A S + + ++YA S+
Sbjct: 29  KEQECLYLLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASI 88

Query: 85  FNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHAGVEPNSYTFPFLLKSCAKLASA 144
           F  I++P  F +N+MIRG    +S   AL F+  M+  G EP+++T+P LLK+C +L S 
Sbjct: 89  FRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSI 148

Query: 145 REGKQIHAHVLKLGFVSDVFIHTSLINI 171
           REGKQIH  V KLG  +DVF+  SLIN+
Sbjct: 149 REGKQIHGQVFKLGLEADVFVQNSLINM 176

BLAST of Cp4.1LG18g04810 vs. ExPASy Swiss-Prot
Match: Q9MA95 (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-23
Identity = 56/146 (38.36%), Postives = 92/146 (63.01%), Query Frame = 0

Query: 28  PSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFALSKLIEF-SAVSRYADISYAVSLFNSI 87
           P L  +  CRS+  L Q+H  +IK+ +      LS+LI+F +      ++SYA S+F SI
Sbjct: 8   PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67

Query: 88  EEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHAGVEPNSYTFPFLLKSCAKLASAREGK 147
           + P+++IWNSMIRG S S +P  AL+F+  M+  G  P+ +TFP++LK+C+ L   + G 
Sbjct: 68  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 127

Query: 148 QIHAHVLKLGFVSDVFIHTSLINIQM 173
            +H  V+K GF  ++++ T L+++ M
Sbjct: 128 CVHGFVVKTGFEVNMYVSTCLLHMYM 153

BLAST of Cp4.1LG18g04810 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-23
Identity = 64/167 (38.32%), Postives = 94/167 (56.29%), Query Frame = 0

Query: 14  SPSSDPPYRLLQDHPS--LKLISKCRSIRTLRQIHAQIIKTGLHNTQFALSKLIEFSAVS 73
           SP  + P      HPS     I+ CR+IR L QIHA  IK+G      A ++++ F A S
Sbjct: 9   SPGGNSPASSPASHPSSLFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATS 68

Query: 74  --RYADISYAVSLFNSIEEPNLFIWNSMIRGLSIS---LSPVLALVFFVRMIHAGVEPNS 133
              + D+ YA  +FN + + N F WN++IRG S S    + +   +F+  M    VEPN 
Sbjct: 69  DLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNR 128

Query: 134 YTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLINIQML 174
           +TFP +LK+CAK    +EGKQIH   LK GF  D F+ ++L+ + ++
Sbjct: 129 FTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVM 175

BLAST of Cp4.1LG18g04810 vs. NCBI nr
Match: XP_022961045.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucurbita moschata])

HSP 1 Score: 329 bits (843), Expect = 6.67e-106
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0

Query: 1   MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA 60
           MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA
Sbjct: 1   MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA 60

Query: 61  LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHA 120
           LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHA
Sbjct: 61  LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHA 120

Query: 121 GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169
           GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN
Sbjct: 121 GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169

BLAST of Cp4.1LG18g04810 vs. NCBI nr
Match: XP_023515625.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 329 bits (843), Expect = 6.67e-106
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0

Query: 1   MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA 60
           MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA
Sbjct: 1   MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA 60

Query: 61  LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHA 120
           LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHA
Sbjct: 61  LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHA 120

Query: 121 GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169
           GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN
Sbjct: 121 GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169

BLAST of Cp4.1LG18g04810 vs. NCBI nr
Match: KAG6589865.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327 bits (839), Expect = 2.63e-105
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 0

Query: 1   MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA 60
           MATSAPSLVLSPTSPSSDPPYRLLQ+HPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA
Sbjct: 1   MATSAPSLVLSPTSPSSDPPYRLLQEHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA 60

Query: 61  LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHA 120
           LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHA
Sbjct: 61  LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHA 120

Query: 121 GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169
           GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN
Sbjct: 121 GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169

BLAST of Cp4.1LG18g04810 vs. NCBI nr
Match: XP_022987625.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucurbita maxima])

HSP 1 Score: 326 bits (836), Expect = 7.38e-105
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 0

Query: 1   MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA 60
           MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA
Sbjct: 1   MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA 60

Query: 61  LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHA 120
           LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFF RMIHA
Sbjct: 61  LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFARMIHA 120

Query: 121 GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169
           GVEPNSYTFPFLLKSCA+LASAREGKQIHAHVLKLGFVSDVFIHTSLIN
Sbjct: 121 GVEPNSYTFPFLLKSCARLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169

BLAST of Cp4.1LG18g04810 vs. NCBI nr
Match: KAE8653077.1 (hypothetical protein Csa_019866, partial [Cucumis sativus])

HSP 1 Score: 289 bits (740), Expect = 2.54e-97
Identity = 148/172 (86.05%), Postives = 160/172 (93.02%), Query Frame = 0

Query: 1   MATSAPSLVLSPTS---PSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNT 60
           MA S+PSL+LSP+    PSSDPPYR+LQ+HPSLKL+SKC+SIRT +QIHA IIKTGLHNT
Sbjct: 1   MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNT 60

Query: 61  QFALSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRM 120
            FALSKLIEFSAVSR  DISYA+SLFNSIEEPNLFIWNSMIRGLS+SLSP LALVFFVRM
Sbjct: 61  LFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRM 120

Query: 121 IHAGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169
           I++GVEPNSYTFPFLLKSCAKLASA EGKQIHAHVLKLGFVSDVFIHTSLIN
Sbjct: 121 IYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLIN 172

BLAST of Cp4.1LG18g04810 vs. ExPASy TrEMBL
Match: A0A6J1HAU9 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111461670 PE=3 SV=1)

HSP 1 Score: 329 bits (843), Expect = 3.23e-106
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0

Query: 1   MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA 60
           MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA
Sbjct: 1   MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA 60

Query: 61  LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHA 120
           LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHA
Sbjct: 61  LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHA 120

Query: 121 GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169
           GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN
Sbjct: 121 GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169

BLAST of Cp4.1LG18g04810 vs. ExPASy TrEMBL
Match: A0A6J1JHE6 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111485125 PE=3 SV=1)

HSP 1 Score: 326 bits (836), Expect = 3.57e-105
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 0

Query: 1   MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA 60
           MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA
Sbjct: 1   MATSAPSLVLSPTSPSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFA 60

Query: 61  LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHA 120
           LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFF RMIHA
Sbjct: 61  LSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFARMIHA 120

Query: 121 GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169
           GVEPNSYTFPFLLKSCA+LASAREGKQIHAHVLKLGFVSDVFIHTSLIN
Sbjct: 121 GVEPNSYTFPFLLKSCARLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169

BLAST of Cp4.1LG18g04810 vs. ExPASy TrEMBL
Match: A0A0A0LU28 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G306800 PE=3 SV=1)

HSP 1 Score: 289 bits (740), Expect = 7.04e-91
Identity = 148/172 (86.05%), Postives = 160/172 (93.02%), Query Frame = 0

Query: 1   MATSAPSLVLSPTS---PSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNT 60
           MA S+PSL+LSP+    PSSDPPYR+LQ+HPSLKL+SKC+SIRT +QIHA IIKTGLHNT
Sbjct: 1   MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNT 60

Query: 61  QFALSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRM 120
            FALSKLIEFSAVSR  DISYA+SLFNSIEEPNLFIWNSMIRGLS+SLSP LALVFFVRM
Sbjct: 61  LFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRM 120

Query: 121 IHAGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169
           I++GVEPNSYTFPFLLKSCAKLASA EGKQIHAHVLKLGFVSDVFIHTSLIN
Sbjct: 121 IYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLIN 172

BLAST of Cp4.1LG18g04810 vs. ExPASy TrEMBL
Match: A0A5A7TTJ1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00470 PE=3 SV=1)

HSP 1 Score: 288 bits (737), Expect = 1.96e-90
Identity = 146/172 (84.88%), Postives = 162/172 (94.19%), Query Frame = 0

Query: 1   MATSAPSLVLSPTS---PSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNT 60
           MA S+PSL+LSP+    PSSDPPYR+LQ+HP+LKL+SKC++IRT +QIHA IIKTGLHNT
Sbjct: 1   MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPALKLLSKCQNIRTFKQIHAHIIKTGLHNT 60

Query: 61  QFALSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRM 120
            FALSKLIEFSAVSR  DISYA+SLF+SIE+PNLFIWNSMIRGLS+SLSPVLALVFFVRM
Sbjct: 61  HFALSKLIEFSAVSRSGDISYAISLFSSIEDPNLFIWNSMIRGLSMSLSPVLALVFFVRM 120

Query: 121 IHAGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169
           I++GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN
Sbjct: 121 IYSGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 172

BLAST of Cp4.1LG18g04810 vs. ExPASy TrEMBL
Match: A0A1S3CMX0 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502738 PE=3 SV=1)

HSP 1 Score: 288 bits (737), Expect = 2.17e-90
Identity = 146/172 (84.88%), Postives = 162/172 (94.19%), Query Frame = 0

Query: 1   MATSAPSLVLSPTS---PSSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGLHNT 60
           MA S+PSL+LSP+    PSSDPPYR+LQ+HP+LKL+SKC++IRT +QIHA IIKTGLHNT
Sbjct: 1   MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPALKLLSKCQNIRTFKQIHAHIIKTGLHNT 60

Query: 61  QFALSKLIEFSAVSRYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRM 120
            FALSKLIEFSAVSR  DISYA+SLF+SIE+PNLFIWNSMIRGLS+SLSPVLALVFFVRM
Sbjct: 61  HFALSKLIEFSAVSRSGDISYAISLFSSIEDPNLFIWNSMIRGLSMSLSPVLALVFFVRM 120

Query: 121 IHAGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 169
           I++GVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN
Sbjct: 121 IYSGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLIN 172

BLAST of Cp4.1LG18g04810 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 181.8 bits (460), Expect = 4.7e-46
Identity = 94/177 (53.11%), Postives = 129/177 (72.88%), Query Frame = 0

Query: 1   MATSAPSLVLSPTSP------SSDPPYRLLQDHPSLKLISKCRSIRTLRQIHAQIIKTGL 60
           M + +P  V S + P      SSDPPY  +++HPSL L+  C+++++LR IHAQ+IK GL
Sbjct: 2   MLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGL 61

Query: 61  HNTQFALSKLIEFSAVS-RYADISYAVSLFNSIEEPNLFIWNSMIRGLSISLSPVLALVF 120
           HNT +ALSKLIEF  +S  +  + YA+S+F +I+EPNL IWN+M RG ++S  PV AL  
Sbjct: 62  HNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKL 121

Query: 121 FVRMIHAGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLINI 171
           +V MI  G+ PNSYTFPF+LKSCAK  + +EG+QIH HVLKLG   D+++HTSLI++
Sbjct: 122 YVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISM 178

BLAST of Cp4.1LG18g04810 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-25
Identity = 56/144 (38.89%), Postives = 90/144 (62.50%), Query Frame = 0

Query: 27  HPSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFALSKLIEFSAVSRYAD-ISYAVSLFNS 86
           + ++  + +C     L+QIHA+++KTGL    +A++K + F   S  +D + YA  +F+ 
Sbjct: 15  YETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDG 74

Query: 87  IEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHAGVEPNSYTFPFLLKSCAKLASAREG 146
            + P+ F+WN MIRG S S  P  +L+ + RM+ +    N+YTFP LLK+C+ L++  E 
Sbjct: 75  FDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEET 134

Query: 147 KQIHAHVLKLGFVSDVFIHTSLIN 170
            QIHA + KLG+ +DV+   SLIN
Sbjct: 135 TQIHAQITKLGYENDVYAVNSLIN 158

BLAST of Cp4.1LG18g04810 vs. TAIR 10
Match: AT1G31920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-24
Identity = 60/148 (40.54%), Postives = 95/148 (64.19%), Query Frame = 0

Query: 25  QDHPSLKLISKCRSIRTLRQIHAQIIKTGL-HNTQFALSKLIEFSAVSRYAD-ISYAVSL 84
           ++   L L+ +C +I   +Q+HA+ IK  L +++ F+ S ++   A S + + ++YA S+
Sbjct: 29  KEQECLYLLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASI 88

Query: 85  FNSIEEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHAGVEPNSYTFPFLLKSCAKLASA 144
           F  I++P  F +N+MIRG    +S   AL F+  M+  G EP+++T+P LLK+C +L S 
Sbjct: 89  FRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSI 148

Query: 145 REGKQIHAHVLKLGFVSDVFIHTSLINI 171
           REGKQIH  V KLG  +DVF+  SLIN+
Sbjct: 149 REGKQIHGQVFKLGLEADVFVQNSLINM 176

BLAST of Cp4.1LG18g04810 vs. TAIR 10
Match: AT3G05240.1 (mitochondrial editing factor 19 )

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-24
Identity = 56/146 (38.36%), Postives = 92/146 (63.01%), Query Frame = 0

Query: 28  PSLKLISKCRSIRTLRQIHAQIIKTGLHNTQFALSKLIEF-SAVSRYADISYAVSLFNSI 87
           P L  +  CRS+  L Q+H  +IK+ +      LS+LI+F +      ++SYA S+F SI
Sbjct: 8   PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67

Query: 88  EEPNLFIWNSMIRGLSISLSPVLALVFFVRMIHAGVEPNSYTFPFLLKSCAKLASAREGK 147
           + P+++IWNSMIRG S S +P  AL+F+  M+  G  P+ +TFP++LK+C+ L   + G 
Sbjct: 68  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 127

Query: 148 QIHAHVLKLGFVSDVFIHTSLINIQM 173
            +H  V+K GF  ++++ T L+++ M
Sbjct: 128 CVHGFVVKTGFEVNMYVSTCLLHMYM 153

BLAST of Cp4.1LG18g04810 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-24
Identity = 64/167 (38.32%), Postives = 94/167 (56.29%), Query Frame = 0

Query: 14  SPSSDPPYRLLQDHPS--LKLISKCRSIRTLRQIHAQIIKTGLHNTQFALSKLIEFSAVS 73
           SP  + P      HPS     I+ CR+IR L QIHA  IK+G      A ++++ F A S
Sbjct: 9   SPGGNSPASSPASHPSSLFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATS 68

Query: 74  --RYADISYAVSLFNSIEEPNLFIWNSMIRGLSIS---LSPVLALVFFVRMIHAGVEPNS 133
              + D+ YA  +FN + + N F WN++IRG S S    + +   +F+  M    VEPN 
Sbjct: 69  DLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNR 128

Query: 134 YTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLINIQML 174
           +TFP +LK+CAK    +EGKQIH   LK GF  D F+ ++L+ + ++
Sbjct: 129 FTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVM 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LN016.7e-4553.11Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
Q9FJY72.2e-2438.89Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX... [more]
Q9C6T21.4e-2340.54Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX... [more]
Q9MA951.9e-2338.36Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th... [more]
Q9FI801.9e-2338.32Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
XP_022961045.16.67e-106100.00pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucurbita ... [more]
XP_023515625.16.67e-106100.00pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucurbita ... [more]
KAG6589865.12.63e-10599.41Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
XP_022987625.17.38e-10598.82pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucurbita ... [more]
KAE8653077.12.54e-9786.05hypothetical protein Csa_019866, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A6J1HAU93.23e-106100.00pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Cucurbit... [more]
A0A6J1JHE63.57e-10598.82pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Cucurbit... [more]
A0A0A0LU287.04e-9186.05DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G3068... [more]
A0A5A7TTJ11.96e-9084.88Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CMX02.17e-9084.88pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Cucumis ... [more]
Match NameE-valueIdentityDescription
AT1G08070.14.7e-4653.11Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G66520.11.6e-2538.89Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G31920.11.0e-2440.54Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G05240.11.3e-2438.36mitochondrial editing factor 19 [more]
AT5G48910.11.3e-2438.32Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 89..138
e-value: 2.5E-8
score: 34.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 93..126
e-value: 6.1E-4
score: 17.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 90..124
score: 8.944478
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 27..172
e-value: 2.3E-18
score: 68.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 14..170
NoneNo IPR availablePANTHERPTHR47928:SF97OS03G0635000 PROTEINcoord: 14..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g04810.1Cp4.1LG18g04810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding