Cp4.1LG18g04550 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g04550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Auxin-responsive protein
Location	Cp4.1LG18: 5532276 .. 5533862 (+)
RNA-Seq Expression	Cp4.1LG18g04550
Synteny	Cp4.1LG18g04550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACGTCGGAGACGGTTCCACAGTCGCCGGAATCCGATATGACCCAAATCAGCTTCGATGAAACTGAGCTCACCTTGGGACTTCCCGGAAACAAAGTGAATGCCAAGCGTGGCTTCCATGACACGGTCGATGCCGGTGTCGGGAGCTCGACAAGTGAACCGAGGGACGGTCGCAACGAGCCAGAACTCATTGCTTCTGCGGATGGTAAGTTTCAACATAGATTATATAAAGCTTATGGACTTGACTTGACACTTTTGAGTATGACGTGGAATGTTATGATTTGGTTTGTAGGGCAAAAGCGGGCGGTAATGGGTTGGCCGCCGGTGAGATCATATAGAAGAAAGACAATAGAAATGAGGTGCAAGTATGTCAAAGTTGCGGCTGATGGGGCGCCGTACCTGCGTAAGCTTGACCTTGAGATGTTCAATGGCTATCAAGACCTATTCATTGCATTTGAGGAATTGTTCACCTCCTTTCCCATATGTTGTGAGTTCTTAACTTACTAACTCTACTCCATTATTCTTATCATGCCATGTCGGGATTGAACAATTTTACGGTCTTTAAGTCGATAACAAGTGTCTTATCCATTGAGTCACGCAAAATCACTTCGTTGCTCAGTATGGTTGATACAATGCCACCGACATTTTTTTATCGTCGTATTTTGAGATGGGCAATGATGGAATGATAGTACAAACGTGCCAGATCCCATATCGGTTAAAGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAATTTTTTGAGGGAAAGCCCGAAAAATAATACGCAAAGAGGACAATATCTGCTAGCAGCGGGCTTGAGCTTAGGCTTGGCTGTTTGAAGAATTTTACACTTATGGATATATGTGTGTTTTTAGGTGATTACTTGGAAGAAGGGAACAATTTGAACCCAATGAAGAGAGGGGATGAATACTTACCAACTTATGAAGATAAAGATGGGGATTGGATGTTAGTTGGAGATGTCCCATGGAAGTAAGTTTGATAATCATTCTTTTATAATCTTGTTTAATTAACTAACTAATTAATTAATTAATTAACCTTCTCCATTCTAATCGTATGGCAAAATGTGCAGATTATTTATTGAATCTTGCAAACGTATTCGTTTGATGAAGGGTTCAGATACCATTGGGGCAGGTAAATTAGTGTTTTTAATTAAGAAATTCATCTTGTTCCATAATTATTATTAAAATTAACAGTTTGTGGTTCACTTATATGCAGCTCCAAGAACACCATGAAAAGGAGAAAAGGAGAGGGGAGGATGCTTTTGGATGGGCAGCTTTTTCTTTTTTAATTTATTTTTGCAGTCATGGCATTGCCTTAAATGTGTTTAGGCCTTAGTTTTGTATAATAAAATGTCGGTTTGGAAAGTAATACATACTTAGTCTTGTATATAGTTGTTAGCTTGAACATAGCTTAACTTATGACTCAATTCTAACTCCTAATTTTGAACTCTTTCCCTCGTTTTCGTTGGATCGTAAATGATGATCAAATTAATGTCTTATAGAAAAGGATTGAATTGCCTTTAATGTTGACTTCTA

mRNA sequence

ATGTCGACGTCGGAGACGGTTCCACAGTCGCCGGAATCCGATATGACCCAAATCAGCTTCGATGAAACTGAGCTCACCTTGGGACTTCCCGGAAACAAAGTGAATGCCAAGCGTGGCTTCCATGACACGGTCGATGCCGGTGTCGGGAGCTCGACAAGTGAACCGAGGGACGGTCGCAACGAGCCAGAACTCATTGCTTCTGCGGATGGTAAGTTTCAACATAGATTATATAAAGCTTATGGACTTGACTTGACACTTTTGAGTATGACGTGGAATGTTATGATTTGATTATTTATTGAATCTTGCAAACGTATTCGTTTGATGAAGGGTTCAGATACCATTGGGGCAGCTCCAAGAACACCATGAAAAGGAGAAAAGGAGAGGGGAGGATGCTTTTGGATGGGCAGCTTTTTCTTTTTTAATTTATTTTTGCAGTCATGGCATTGCCTTAAATGTGTTTAGGCCTTAGTTTTGTATAATAAAATGTCGGTTTGGAAAGTAATACATACTTAGTCTTGTATATAGTTGTTAGCTTGAACATAGCTTAACTTATGACTCAATTCTAACTCCTAATTTTGAACTCTTTCCCTCGTTTTCGTTGGATCGTAAATGATGATCAAATTAATGTCTTATAGAAAAGGATTGAATTGCCTTTAATGTTGACTTCTA

Coding sequence (CDS)

ATGTCGACGTCGGAGACGGTTCCACAGTCGCCGGAATCCGATATGACCCAAATCAGCTTCGATGAAACTGAGCTCACCTTGGGACTTCCCGGAAACAAAGTGAATGCCAAGCGTGGCTTCCATGACACGGTCGATGCCGGTGTCGGGAGCTCGACAAGTGAACCGAGGGACGGTCGCAACGAGCCAGAACTCATTGCTTCTGCGGATGGTAAGTTTCAACATAGATTATATAAAGCTTATGGACTTGACTTGACACTTTTGAGTATGACGTGGAATGTTATGATTTGA

Protein sequence

MSTSETVPQSPESDMTQISFDETELTLGLPGNKVNAKRGFHDTVDAGVGSSTSEPRDGRNEPELIASADGKFQHRLYKAYGLDLTLLSMTWNVMI

Homology

[Close]

BLAST of Cp4.1LG18g04550 vs. NCBI nr
Match: XP_023516646.1 (auxin-responsive protein IAA11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142 bits (358), Expect = 1.69e-40
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MSTSETVPQSPESDMTQISFDETELTLGLPGNKVNAKRGFHDTVDAGVGSSTSEPRDGRN 60
          MSTSETVPQSPESDMTQISFDETELTLGLPGNKVNAKRGFHDTVDAGVGSSTSEPRDGRN
Sbjct: 1  MSTSETVPQSPESDMTQISFDETELTLGLPGNKVNAKRGFHDTVDAGVGSSTSEPRDGRN 60

Query: 61 EPELIASADGK 71
          EPELIASADG+
Sbjct: 61 EPELIASADGQ 71

[Close]

BLAST of Cp4.1LG18g04550 vs. NCBI nr
Match: KAG7023561.1 (Auxin-responsive protein IAA11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137 bits (345), Expect = 7.87e-39
Identity = 66/71 (92.96%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MSTSETVPQSPESDMTQISFDETELTLGLPGNKVNAKRGFHDTVDAGVGSSTSEPRDGRN 60
          MSTSETVPQSPESDMTQISFDETELTLGLPGNKVNAKRGFH+TVDAGVGSSTSEPRDGRN
Sbjct: 1  MSTSETVPQSPESDMTQISFDETELTLGLPGNKVNAKRGFHNTVDAGVGSSTSEPRDGRN 60

Query: 61 EPELIASADGK 71
          EPEL++S DG+
Sbjct: 61 EPELVSSGDGQ 71

[Close]

BLAST of Cp4.1LG18g04550 vs. NCBI nr
Match: XP_022961044.1 (auxin-responsive protein IAA11-like [Cucurbita moschata])

HSP 1 Score: 137 bits (346), Expect = 1.11e-38
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  MSTSETVPQSPESDMTQISFDETELTLGLPGNKVNAKRGFHDTVDAGVGSSTSEPRDGRN 60
          MSTSETVPQSPESDM QISFDETELTLGLPGNKVNAKRGFHDTVDAGVGSSTSEPRDGRN
Sbjct: 1  MSTSETVPQSPESDMAQISFDETELTLGLPGNKVNAKRGFHDTVDAGVGSSTSEPRDGRN 60

Query: 61 EPELIASADGK 71
          EPELI+S DG+
Sbjct: 61 EPELISSGDGQ 71

[Close]

BLAST of Cp4.1LG18g04550 vs. NCBI nr
Match: KAG6589890.1 (Auxin-responsive protein IAA11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (345), Expect = 1.57e-38
Identity = 66/71 (92.96%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MSTSETVPQSPESDMTQISFDETELTLGLPGNKVNAKRGFHDTVDAGVGSSTSEPRDGRN 60
          MSTSETVPQSPESDMTQISFDETELTLGLPGNKVNAKRGFH+TVDAGVGSSTSEPRDGRN
Sbjct: 1  MSTSETVPQSPESDMTQISFDETELTLGLPGNKVNAKRGFHNTVDAGVGSSTSEPRDGRN 60

Query: 61 EPELIASADGK 71
          EPEL++S DG+
Sbjct: 61 EPELVSSGDGQ 71

[Close]

BLAST of Cp4.1LG18g04550 vs. NCBI nr
Match: XP_022987877.1 (auxin-responsive protein IAA11-like [Cucurbita maxima])

HSP 1 Score: 133 bits (335), Expect = 5.13e-37
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MSTSETVPQSPESDMTQISFDETELTLGLPGNKVNAKRGFHDTVDAGVGSSTSEPRDGRN 60
          MSTSETVPQSPESDMTQISFDETELTLGLPGNK+NAKRGFHDTVD GV SSTSEPRDGRN
Sbjct: 1  MSTSETVPQSPESDMTQISFDETELTLGLPGNKLNAKRGFHDTVDGGVWSSTSEPRDGRN 60

Query: 61 EPELIASADGK 71
          EPEL++S DG+
Sbjct: 61 EPELVSSGDGQ 71

[Close]

BLAST of Cp4.1LG18g04550 vs. ExPASy TrEMBL
Match: A0A6J1HCV0 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461669 PE=3 SV=1)

HSP 1 Score: 137 bits (346), Expect = 5.37e-39
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  MSTSETVPQSPESDMTQISFDETELTLGLPGNKVNAKRGFHDTVDAGVGSSTSEPRDGRN 60
          MSTSETVPQSPESDM QISFDETELTLGLPGNKVNAKRGFHDTVDAGVGSSTSEPRDGRN
Sbjct: 1  MSTSETVPQSPESDMAQISFDETELTLGLPGNKVNAKRGFHDTVDAGVGSSTSEPRDGRN 60

Query: 61 EPELIASADGK 71
          EPELI+S DG+
Sbjct: 61 EPELISSGDGQ 71

[Close]

BLAST of Cp4.1LG18g04550 vs. ExPASy TrEMBL
Match: A0A6J1JBK2 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111485284 PE=3 SV=1)

HSP 1 Score: 133 bits (335), Expect = 2.48e-37
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MSTSETVPQSPESDMTQISFDETELTLGLPGNKVNAKRGFHDTVDAGVGSSTSEPRDGRN 60
          MSTSETVPQSPESDMTQISFDETELTLGLPGNK+NAKRGFHDTVD GV SSTSEPRDGRN
Sbjct: 1  MSTSETVPQSPESDMTQISFDETELTLGLPGNKLNAKRGFHDTVDGGVWSSTSEPRDGRN 60

Query: 61 EPELIASADGK 71
          EPEL++S DG+
Sbjct: 61 EPELVSSGDGQ 71

[Close]

BLAST of Cp4.1LG18g04550 vs. ExPASy TrEMBL
Match: A0A5D3BM61 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00180 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.82e-20
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1  MSTSETVPQSPESDMTQISFDETELTLGLPG--------NKVNAKRGFHDTVDAG-VGSS 60
          MS+SETVP SPESD+TQI+FDETELTLGLPG        +K NAKR FHDTVDAG VGSS
Sbjct: 1  MSSSETVPDSPESDLTQINFDETELTLGLPGAEFRPTTHHKSNAKRCFHDTVDAGGVGSS 60

Query: 61 TSEPRDGR--NEPELIASADGK 71
          TS+PRD    +EP+  +S +G+
Sbjct: 61 TSKPRDISLDDEPQHGSSGNGE 82

[Close]

BLAST of Cp4.1LG18g04550 vs. ExPASy TrEMBL
Match: A0A0A0LUB1 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_1G397130 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.68e-20
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1  MSTSETVPQSPESDMTQISFDETELTLGLPG--------NKVNAKRGFHDTVDAGVGSST 60
          MS+SET+P+SP+SD+TQI+FDETELTLGLPG        +K NAKR FHDTVDA VGSST
Sbjct: 1  MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60

[Close]

BLAST of Cp4.1LG18g04550 vs. ExPASy TrEMBL
Match: A0A5A7TIX8 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00060 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.61e-20
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 1  MSTSETVPQSPESDMTQISFDETELTLGLPG--------NKVNAKRGFHDTVDAG-VGSS 60
          MS+SETVP SPESD TQI+FDETELTLGLPG        +K NAKR FHDTVDAG VGSS
Sbjct: 1  MSSSETVPDSPESDFTQINFDETELTLGLPGAEFRPTTHHKSNAKRCFHDTVDAGCVGSS 60

Query: 61 TSEPRDGR--NEPELIASADGK 71
          TS+PRD    +EP+  +S +G+
Sbjct: 61 TSKPRDISLDDEPQHGSSGNGE 82

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g04550 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g04550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516646.1	1.69e-40	98.59	auxin-responsive protein IAA11-like [Cucurbita pepo subsp. pepo]	[more]
KAG7023561.1	7.87e-39	92.96	Auxin-responsive protein IAA11 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022961044.1	1.11e-38	94.37	auxin-responsive protein IAA11-like [Cucurbita moschata]	[more]
KAG6589890.1	1.57e-38	92.96	Auxin-responsive protein IAA11, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022987877.1	5.13e-37	90.14	auxin-responsive protein IAA11-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG18g04550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HCV0	5.37e-39	94.37	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461669 PE=3 SV=1	[more]
A0A6J1JBK2	2.48e-37	90.14	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111485284 PE=3 SV=1	[more]
A0A5D3BM61	1.82e-20	64.63	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0LUB1	2.68e-20	66.67	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_1G397130 PE=3 SV=1	[more]
A0A5A7TIX8	3.61e-20	64.63	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of Cp4.1LG18g04550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g04550.1	Cp4.1LG18g04550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus