Cp4.1LG18g04410 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g04410
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	LEA_2 domain-containing protein
Location	Cp4.1LG18: 5453580 .. 5455536 (+)
RNA-Seq Expression	Cp4.1LG18g04410
Synteny	Cp4.1LG18g04410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCATAGGCTTTATTGGGACGTGTAAATTCTTGATAGGCTGAGGCGGGTAGCTTAGGGAGGGGCGAGTGTTTTCGCCACGTTACTCATAAAAATCAGTTCCCATTTCAATTCTCTCTAAAACAAAGCATGAGCTGCTCTAAGGACGGTTCGATCCCTGTTCCTTACTCTCCTATTCCCGCAAATGCTACTGCACCGCAAAACGTTGTCGTTTTATCTCTCTATCGTCCCCCTCTCTACCGGCACCGGCGGCTTCTTCGCCTCTGTGCCCTCTACTCCGTCGCTTTCCTCCTCCTCTCCGCCGTTGTTTTTCTACTTTTCCCGTCCGATCCCTCGCTCCAACTCGTTCGATTGAAACTCAATGGGGTGAATGTCCGTTTGTTGCCTGCTGTTGTCCTTGACCTTTCTTTCTCTGCTTCTGTTAGGGTTCGGAATAAGAACTTTTTTTCTCTCGATTACAATTACCTTGGCGTTTCGGTCGGCTACCGGGGAAGACGACTTGGATTTGTGAGCTCTGATGGCGGTCGTGTCTCTGCTCGAGGCTCCTCTTACGTGAACGCCACTCTCGATTTGAATGGGTTACAGATCATTCACGATGTCTTTTTCTTGCTTGAGGATCTGAGGAAGGGTATAATTCCTTTCGATACGGAGACAGAAGTGGAAGGATCCATGGGGCTTTTCTTTATCAAATTCCCAATTAAGGTAATGTTGATCGTGTTCTGTTTCCAACAATATGTCAAATCTTTACTCGGAATTGTAAGTTCGTTCGATGTTGATTCGTTTTAGAGCCTCGCATTCTCAATGATCGAAATTGCGGTAGCATCATTATACATTTGAGCTTTTGTTTGTTTGATTAGTTTGCAATCATTGAATGGATACACCGCAAGAACACTCCATTTGTTTGAAATCACCACGTTTTAATTAATGCTCGTTCTGTTTTGACGGCGATTACATGTTTCTTAGCGTGGAAGTTCAGATAATTGGAAAAGAACACTCAACTCTGTGATTGACTATTTGAAATTTTAGAACCCATTTCTAGTCCTGCAAGTTGCAGCTCCTAAATCATTCCCAAAAGCATAGGCCCAATTGATAACCATTGGATTTTGAAGTTTGTTTGTTTTCTCACAATTTCTTTACAATGAACTTCATCCCTGCATTTGACTTCTTAGATAAATTTGAGAAACAAAAACAAGCTTTTAAAAATTAGCTAGTTTTCAAAACTTGACATGGGTTTTCAAAACATATCAAAAGAAAGACTCTAGGAAGCTTAATTTTCAGTAACCAAAAACCAAATCATTATCAAACTGGTTATTTTTGTGCTATGCTGTTGACTGGGAAAATGCTTGAAGAACATTTATCTTCTTCTGGATTTTATAGTTGAACCGTGCCGTTGATTTGATTGTGCCCTGCCTATTCCTACATTTAACTCAATTATAACAATGTTATCTTAGGCTGTTGGTGTTCTTTTATAGACCTCGAATGTTTTTCTAGTGGAATATGTCATCCGAGTTAAAAGAATCCCTGTAATCCCTGTAATTATAATGTTATGTTAGACTGCTGGCGTTCCTGTATAAATGTCAAATAGTGAAATGTGTCATTTGTATAAATCTCATTCTGTGGCCCCTTTCACCAACTGAACATCCAGCATAAATAGTTTTAATGTATTCAATGCCTGTTGTTTTGATGTTGATTCTTAATGCTCATCAGGCTACAGTATCATGTGAGGTACTTGTGGATACAAATAGCCAAACAATTGAGCATCAAGATTGCTACCCTGAGGTGAGAATTCATCATTTTGCATACTTTTCTGTTGATATTTCTGCCAAAATGACGACCTCACAACCCCTTGGATTTGCAGTGAACGAAAGATGGTAGTTCAGTTTGATTATGACTCTTGTGACTTGAAGCTGAAACTGGGAAGCGGGAACGCCCGTGATATTGTTGAATTCGAGTGTTAA

mRNA sequence

TGGCATAGGCTTTATTGGGACGTGTAAATTCTTGATAGGCTGAGGCGGGTAGCTTAGGGAGGGGCGAGTGTTTTCGCCACGTTACTCATAAAAATCAGTTCCCATTTCAATTCTCTCTAAAACAAAGCATGAGCTGCTCTAAGGACGGTTCGATCCCTGTTCCTTACTCTCCTATTCCCGCAAATGCTACTGCACCGCAAAACGTTGTCGTTTTATCTCTCTATCGTCCCCCTCTCTACCGGCACCGGCGGCTTCTTCGCCTCTGTGCCCTCTACTCCGTCGCTTTCCTCCTCCTCTCCGCCGTTGTTTTTCTACTTTTCCCGTCCGATCCCTCGCTCCAACTCGTTCGATTGAAACTCAATGGGGTGAATGTCCGTTTGTTGCCTGCTGTTGTCCTTGACCTTTCTTTCTCTGCTTCTGTTAGGGTTCGGAATAAGAACTTTTTTTCTCTCGATTACAATTACCTTGGCGTTTCGGTCGGCTACCGGGGAAGACGACTTGGATTTGTGAGCTCTGATGGCGGTCGTGTCTCTGCTCGAGGCTCCTCTTACGTGAACGCCACTCTCGATTTGAATGGGTTACAGATCATTCACGATGTCTTTTTCTTGCTTGAGGATCTGAGGAAGGGTATAATTCCTTTCGATACGGAGACAGAAGTGGAAGGATCCATGGGGCTTTTCTTTATCAAATTCCCAATTAAGGCTACAGTATCATGTGAGGTACTTGTGGATACAAATAGCCAAACAATTGAGCATCAAGATTGCTACCCTGAGCTGAAACTGGGAAGCGGGAACGCCCGTGATATTGTTGAATTCGAGTGTTAA

Coding sequence (CDS)

ATGAGCTGCTCTAAGGACGGTTCGATCCCTGTTCCTTACTCTCCTATTCCCGCAAATGCTACTGCACCGCAAAACGTTGTCGTTTTATCTCTCTATCGTCCCCCTCTCTACCGGCACCGGCGGCTTCTTCGCCTCTGTGCCCTCTACTCCGTCGCTTTCCTCCTCCTCTCCGCCGTTGTTTTTCTACTTTTCCCGTCCGATCCCTCGCTCCAACTCGTTCGATTGAAACTCAATGGGGTGAATGTCCGTTTGTTGCCTGCTGTTGTCCTTGACCTTTCTTTCTCTGCTTCTGTTAGGGTTCGGAATAAGAACTTTTTTTCTCTCGATTACAATTACCTTGGCGTTTCGGTCGGCTACCGGGGAAGACGACTTGGATTTGTGAGCTCTGATGGCGGTCGTGTCTCTGCTCGAGGCTCCTCTTACGTGAACGCCACTCTCGATTTGAATGGGTTACAGATCATTCACGATGTCTTTTTCTTGCTTGAGGATCTGAGGAAGGGTATAATTCCTTTCGATACGGAGACAGAAGTGGAAGGATCCATGGGGCTTTTCTTTATCAAATTCCCAATTAAGGCTACAGTATCATGTGAGGTACTTGTGGATACAAATAGCCAAACAATTGAGCATCAAGATTGCTACCCTGAGCTGAAACTGGGAAGCGGGAACGCCCGTGATATTGTTGAATTCGAGTGTTAA

Protein sequence

MSCSKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVVFLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYRGRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGSMGLFFIKFPIKATVSCEVLVDTNSQTIEHQDCYPELKLGSGNARDIVEFEC

Homology

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BLAST of Cp4.1LG18g04410 vs. NCBI nr
Match: XP_023515526.1 (uncharacterized protein LOC111779657 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 421 bits (1081), Expect = 6.47e-148
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVV 60
           MSCSKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVV
Sbjct: 1   MSCSKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVV 60

Query: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120
           FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180
           GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS
Sbjct: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180

Query: 181 MGLFFIKFPIKATVSCEVLVDTNSQTIEHQDCYPE 215
           MGLFFIKFPIKATVSCEVLVDTNSQTIEHQDCYPE
Sbjct: 181 MGLFFIKFPIKATVSCEVLVDTNSQTIEHQDCYPE 215

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BLAST of Cp4.1LG18g04410 vs. NCBI nr
Match: KAG6589903.1 (hypothetical protein SDJN03_15326, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 409 bits (1050), Expect = 3.44e-143
Identity = 209/215 (97.21%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVV 60
           MSCSKDGSIPVPYSPIP NA APQNVVVLSLYRPPLYR RRLLRLCALYS AFLLLSA V
Sbjct: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFV 60

Query: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120
           FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180
           GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS
Sbjct: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180

Query: 181 MGLFFIKFPIKATVSCEVLVDTNSQTIEHQDCYPE 215
           MGLFFIKFPIKATVSCEV VDTNSQTIEHQDCYPE
Sbjct: 181 MGLFFIKFPIKATVSCEVFVDTNSQTIEHQDCYPE 215

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BLAST of Cp4.1LG18g04410 vs. NCBI nr
Match: XP_022987870.1 (uncharacterized protein LOC111485280 [Cucurbita maxima])

HSP 1 Score: 407 bits (1045), Expect = 1.99e-142
Identity = 208/215 (96.74%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVV 60
           MSCSKDGSIPVPYSPIP NA APQNVVVLSLYRPPLYR RRLLRLCALYS AFLLLSAVV
Sbjct: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAVV 60

Query: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120
           FLLFPSDPSLQLVRLKLNGV VRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVG+R
Sbjct: 61  FLLFPSDPSLQLVRLKLNGVKVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGFR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180
           GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS
Sbjct: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180

Query: 181 MGLFFIKFPIKATVSCEVLVDTNSQTIEHQDCYPE 215
           MGLFFIKFPIKATVSCEV VDTNSQTIEHQDCYPE
Sbjct: 181 MGLFFIKFPIKATVSCEVFVDTNSQTIEHQDCYPE 215

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BLAST of Cp4.1LG18g04410 vs. NCBI nr
Match: XP_022960913.1 (uncharacterized protein LOC111461574 [Cucurbita moschata])

HSP 1 Score: 406 bits (1043), Expect = 4.01e-142
Identity = 207/215 (96.28%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVV 60
           MSCSKDGSIPVPYSPIP NA APQN+VVLSLYRPPLYR RRLLRLC LYS AFLLLSAVV
Sbjct: 1   MSCSKDGSIPVPYSPIPPNAAAPQNLVVLSLYRPPLYRQRRLLRLCVLYSAAFLLLSAVV 60

Query: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120
           FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRN NFFSLDYNYLGVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNNNFFSLDYNYLGVSVGYR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180
           GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS
Sbjct: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180

Query: 181 MGLFFIKFPIKATVSCEVLVDTNSQTIEHQDCYPE 215
           MGLFFIKFPIKATVSCEV VDTNSQTIEHQDCYPE
Sbjct: 181 MGLFFIKFPIKATVSCEVFVDTNSQTIEHQDCYPE 215

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BLAST of Cp4.1LG18g04410 vs. NCBI nr
Match: KAG7023573.1 (hypothetical protein SDJN02_14599, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 370 bits (949), Expect = 4.96e-127
Identity = 202/265 (76.23%), Postives = 210/265 (79.25%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVV 60
           MSCSKDGSIPVPYSPIP NA APQNVVVLSLYRPPLYR RRLLRLCALYS AFLLLSA V
Sbjct: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFV 60

Query: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120
           FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180
           GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS
Sbjct: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180

Query: 181 MGLFFIKFPIKAT-----------------------------VSCEVLVDTNSQT----- 231
           MGLFFIKFPIK +                                 + + T S+      
Sbjct: 181 MGLFFIKFPIKTSNVFLVEYVIRVKRIPVIPYHVRYLWIQIAKQLSIKIATLSEPKMGIR 240

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BLAST of Cp4.1LG18g04410 vs. ExPASy TrEMBL
Match: A0A6J1JI07 (uncharacterized protein LOC111485280 OS=Cucurbita maxima OX=3661 GN=LOC111485280 PE=4 SV=1)

HSP 1 Score: 407 bits (1045), Expect = 9.63e-143
Identity = 208/215 (96.74%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVV 60
           MSCSKDGSIPVPYSPIP NA APQNVVVLSLYRPPLYR RRLLRLCALYS AFLLLSAVV
Sbjct: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAVV 60

Query: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120
           FLLFPSDPSLQLVRLKLNGV VRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVG+R
Sbjct: 61  FLLFPSDPSLQLVRLKLNGVKVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGFR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180
           GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS
Sbjct: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180

Query: 181 MGLFFIKFPIKATVSCEVLVDTNSQTIEHQDCYPE 215
           MGLFFIKFPIKATVSCEV VDTNSQTIEHQDCYPE
Sbjct: 181 MGLFFIKFPIKATVSCEVFVDTNSQTIEHQDCYPE 215

[Close]

BLAST of Cp4.1LG18g04410 vs. ExPASy TrEMBL
Match: A0A6J1HAC8 (uncharacterized protein LOC111461574 OS=Cucurbita moschata OX=3662 GN=LOC111461574 PE=4 SV=1)

HSP 1 Score: 406 bits (1043), Expect = 1.94e-142
Identity = 207/215 (96.28%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVV 60
           MSCSKDGSIPVPYSPIP NA APQN+VVLSLYRPPLYR RRLLRLC LYS AFLLLSAVV
Sbjct: 1   MSCSKDGSIPVPYSPIPPNAAAPQNLVVLSLYRPPLYRQRRLLRLCVLYSAAFLLLSAVV 60

Query: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120
           FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRN NFFSLDYNYLGVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNNNFFSLDYNYLGVSVGYR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180
           GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS
Sbjct: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180

Query: 181 MGLFFIKFPIKATVSCEVLVDTNSQTIEHQDCYPE 215
           MGLFFIKFPIKATVSCEV VDTNSQTIEHQDCYPE
Sbjct: 181 MGLFFIKFPIKATVSCEVFVDTNSQTIEHQDCYPE 215

[Close]

BLAST of Cp4.1LG18g04410 vs. ExPASy TrEMBL
Match: A0A0A0LTV4 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G369500 PE=4 SV=1)

HSP 1 Score: 340 bits (871), Expect = 3.12e-116
Identity = 175/214 (81.78%), Postives = 191/214 (89.25%), Query Frame = 0


Query: 2   SCSKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVVF 61
           S S D S+PVPY+ IP+NA A QNVVVLSLYRPP  RHRRLLRLCA YS AFLLL AV F
Sbjct: 3   SSSGDDSVPVPYTLIPSNA-AQQNVVVLSLYRPPPCRHRRLLRLCAFYSAAFLLLFAVAF 62

Query: 62  LLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYRG 121
           LLFPSDPSLQLVRLKLN V V L+P V LDLSFS S+RVRNKNFFSL+YN+LGVSVGYRG
Sbjct: 63  LLFPSDPSLQLVRLKLNRVKVHLVPVVSLDLSFSVSLRVRNKNFFSLNYNFLGVSVGYRG 122

Query: 122 RRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGSM 181
           RRLG+VSS+GGRVSARGSSYVNATLDLNGL+++HDV +LL DL KGIIPFDTET+VEGSM
Sbjct: 123 RRLGYVSSEGGRVSARGSSYVNATLDLNGLEVVHDVLYLLADLGKGIIPFDTETDVEGSM 182

Query: 182 GLFFIKFPIKATVSCEVLVDTNSQTIEHQDCYPE 215
           GLFFIK PIKA VSCEVLV+TN+QTIEHQDCYPE
Sbjct: 183 GLFFIKIPIKARVSCEVLVNTNNQTIEHQDCYPE 215

[Close]

BLAST of Cp4.1LG18g04410 vs. ExPASy TrEMBL
Match: A0A6J1CTN0 (uncharacterized protein LOC111014473 OS=Momordica charantia OX=3673 GN=LOC111014473 PE=4 SV=1)

HSP 1 Score: 339 bits (869), Expect = 6.29e-116
Identity = 173/214 (80.84%), Postives = 189/214 (88.32%), Query Frame = 0


Query: 2   SCSKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVVF 61
           S S+D S+PVPYS +P NA A QNVVVLSLYRPP +R RRLLRLCA YS AFLLLSAV F
Sbjct: 3   SSSRDDSVPVPYSLLPPNA-AHQNVVVLSLYRPPRFRRRRLLRLCAFYSAAFLLLSAVAF 62

Query: 62  LLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYRG 121
           LLFP+DPSLQLVRLKLN + VRLLP ++LDLSFSASVRVRN NFFSLDYNYLGVSVGYRG
Sbjct: 63  LLFPADPSLQLVRLKLNRLKVRLLPVLLLDLSFSASVRVRNNNFFSLDYNYLGVSVGYRG 122

Query: 122 RRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGSM 181
           RRLGFVSS+GGRVSARG SYVNATLDLNG ++IHD  +L+EDL  GI+PFDTETEVEG M
Sbjct: 123 RRLGFVSSEGGRVSARGLSYVNATLDLNGFEVIHDGIYLIEDLATGIVPFDTETEVEGYM 182

Query: 182 GLFFIKFPIKATVSCEVLVDTNSQTIEHQDCYPE 215
           GLFFIKFPIKA VSCEV V+TN +TIEHQDCYPE
Sbjct: 183 GLFFIKFPIKARVSCEVFVNTNDKTIEHQDCYPE 215

[Close]

BLAST of Cp4.1LG18g04410 vs. ExPASy TrEMBL
Match: A0A1S3CJK6 (uncharacterized protein LOC103501551 OS=Cucumis melo OX=3656 GN=LOC103501551 PE=4 SV=1)

HSP 1 Score: 327 bits (837), Expect = 4.69e-111
Identity = 171/212 (80.66%), Postives = 186/212 (87.74%), Query Frame = 0


Query: 4   SKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVVFLL 63
           S D S+PVPY+ + +NA A QNVVVLSLYRP   RHRRLLRL A YS AFLLL AV FLL
Sbjct: 5   SGDDSVPVPYTLLSSNA-AQQNVVVLSLYRPTPCRHRRLLRLFAFYSAAFLLLFAVAFLL 64

Query: 64  FPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYRGRR 123
           FPSDPSLQLVRLKLN V V L+P V LDLSFS S+RVRNKNFFSL+YN+LGVSVGYRGRR
Sbjct: 65  FPSDPSLQLVRLKLNRVKVHLVPFVSLDLSFSVSLRVRNKNFFSLNYNFLGVSVGYRGRR 124

Query: 124 LGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGSMGL 183
           LG+VSS GGRVSARGSSYVNATLDLNGL+++HDV +LL DL KGIIPFDTETEVEGSMGL
Sbjct: 125 LGYVSSGGGRVSARGSSYVNATLDLNGLEVVHDVLYLLADLGKGIIPFDTETEVEGSMGL 184

Query: 184 FFIKFPIKATVSCEVLVDTNSQTIEHQDCYPE 215
           FFIK PIKA VSCEVLV+TN+QTIEHQDCYPE
Sbjct: 185 FFIKIPIKARVSCEVLVNTNNQTIEHQDCYPE 215

[Close]

BLAST of Cp4.1LG18g04410 vs. TAIR 10
Match: AT4G13270.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 206.8 bits (525), Expect = 1.8e-53
Identity = 106/218 (48.62%), Postives = 153/218 (70.18%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHR-----RLLRLCALYSVAFLL 60
           M+ SK     +PY+P+P++  + Q+V++L+ YR    RHR     R LR   L++   LL
Sbjct: 1   MASSKHEDYGIPYTPLPSSQPS-QSVILLTPYR----RHRRPSLLRNLRCSLLFTAVILL 60

Query: 61  LSAVVFLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGV 120
           LSA V+LL+PSDP + + R+ LN ++V     + LDLSFS +++VRN++FFSLDY+ L V
Sbjct: 61  LSAAVYLLYPSDPDITVSRINLNHISVVDSHKIALDLSFSLTIKVRNRDFFSLDYDSLVV 120

Query: 121 SVGYRGRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTET 180
           S+GYRGR LG V S GG + AR SSY++ATL+L+GL+++HDV +L+ DL KG+IPFDT  
Sbjct: 121 SIGYRGRELGLVKSKGGHLKARDSSYIDATLELDGLEVVHDVIYLIGDLAKGVIPFDTIA 180

Query: 181 EVEGSMGLFFIKFPIKATVSCEVLVDTNSQTIEHQDCY 214
           +V+G +G+     PI+  VSCEV V+ N+Q I HQDC+
Sbjct: 181 QVQGDLGVLLFNIPIQGKVSCEVYVNVNNQKISHQDCH 213

[Close]

BLAST of Cp4.1LG18g04410 vs. TAIR 10
Match: AT1G52330.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 157.9 bits (398), Expect = 9.7e-39
Identity = 80/202 (39.60%), Postives = 127/202 (62.87%), Query Frame = 0


Query: 13  YSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVVFLLFPSDPSLQL 72
           Y P+P++++   N  VL    P     RR +    L S A    S ++++ +PSDP +++
Sbjct: 16  YKPLPSSSSHELNDAVLISSHPSPPSRRRFIISIFLISFA----SILIYIFWPSDPRIKI 75

Query: 73  VRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYRGRRLGFVSSDGG 132
           +R+K++ V+V   P   +D++   +++V N + +S D+  L V++ YRG+ LG VSSDGG
Sbjct: 76  IRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDGG 135

Query: 133 RVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGSMGLFFIKFPIKA 192
            V+A GSSY++A  +L+G+ +  DV  L+ DL KG + FDT TE  G +G+ F +FP+KA
Sbjct: 136 HVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLKA 195

Query: 193 TVSCEVLVDTNSQTIEHQDCYP 215
            V+C +LVDT +QTI  Q C P
Sbjct: 196 KVACGILVDTVNQTISRQSCSP 213

[Close]

BLAST of Cp4.1LG18g04410 vs. TAIR 10
Match: AT1G52330.2 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 131.3 bits (329), Expect = 9.7e-31
Identity = 67/179 (37.43%), Postives = 111/179 (62.01%), Query Frame = 0


Query: 13  YSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVVFLLFPSDPSLQL 72
           Y P+P++++   N  VL    P     RR +    L S A    S ++++ +PSDP +++
Sbjct: 16  YKPLPSSSSHELNDAVLISSHPSPPSRRRFIISIFLISFA----SILIYIFWPSDPRIKI 75

Query: 73  VRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYRGRRLGFVSSDGG 132
           +R+K++ V+V   P   +D++   +++V N + +S D+  L V++ YRG+ LG VSSDGG
Sbjct: 76  IRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDGG 135

Query: 133 RVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGSMGLFFIKFPIK 192
            V+A GSSY++A  +L+G+ +  DV  L+ DL KG + FDT TE  G +G+ F +FP+K
Sbjct: 136 HVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLK 190

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g04410 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g04410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515526.1	6.47e-148	100.00	uncharacterized protein LOC111779657 [Cucurbita pepo subsp. pepo]	[more]
KAG6589903.1	3.44e-143	97.21	hypothetical protein SDJN03_15326, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022987870.1	1.99e-142	96.74	uncharacterized protein LOC111485280 [Cucurbita maxima]	[more]
XP_022960913.1	4.01e-142	96.28	uncharacterized protein LOC111461574 [Cucurbita moschata]	[more]
KAG7023573.1	4.96e-127	76.23	hypothetical protein SDJN02_14599, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG18g04410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JI07	9.63e-143	96.74	uncharacterized protein LOC111485280 OS=Cucurbita maxima OX=3661 GN=LOC111485280...	[more]
A0A6J1HAC8	1.94e-142	96.28	uncharacterized protein LOC111461574 OS=Cucurbita moschata OX=3662 GN=LOC1114615...	[more]
A0A0A0LTV4	3.12e-116	81.78	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G369500 PE=4 ...	[more]
A0A6J1CTN0	6.29e-116	80.84	uncharacterized protein LOC111014473 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A1S3CJK6	4.69e-111	80.66	uncharacterized protein LOC103501551 OS=Cucumis melo OX=3656 GN=LOC103501551 PE=...	[more]

BLAST of Cp4.1LG18g04410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13270.1	1.8e-53	48.62	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G52330.1	9.7e-39	39.60	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G52330.2	9.7e-31	37.43	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.40.1820		coord: 65..200 e-value: 9.9E-7 score: 30.7
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 11..215
None	No IPR available	PANTHER	PTHR31852:SF119	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 11..215
None	No IPR available	SUPERFAMILY	117070	LEA14-like	coord: 59..190
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 98..194 e-value: 3.2E-11 score: 43.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g04410.1	Cp4.1LG18g04410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane