Cp4.1LG18g03930 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g03930
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	AP complex subunit sigma
Location	Cp4.1LG18: 5133030 .. 5135576 (-)
RNA-Seq Expression	Cp4.1LG18g03930
Synteny	Cp4.1LG18g03930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCCTCGCGCGATCGATTTAGGCTTTTTGTTTTTCGTCTGCGCGAGTTTCATCGAGTTTGTGAAAGGCAAAATGGGGATCAGATTCATTCTGATGGTGAACAAGCAGGGCCAAACCCGCCTCGCTCAGTATTACGAAAATCTTACCCTCGAGGAACGTCGAGCTCTTGAGGGTGAAATCGTTCGCAAATGCCTCGCTCGTAACGAACAACAGGTAAGTTTGGATTCTCGTGCCTAGATCTCAATCCAATTCCTCTGAATTTCTCCTCTGTATCATGTGAATCGATGAATTGTTTTTGAATTTCTGTTGATCTGTAAATTGAATGCAAATTAGGGGAGAATCAGCTGTAGTTGGCCCTAGGTACATGTTGATTGTATTGTCCGTAAAAATTATCATTCATAGTGGTTTGTTTGCACATGCAGCATTTATCCAGTTTTCCTTACGCTAGTGATGATTTTACGCAAGTCTACGGTATTTTTCAGTTACTCTGATGAATAATAGGGAGTTTTATAAGCCAATAACCACCAAATACTTTGATGTCTAATCATCCATTTCTTACCCTGGAATAAAATTCACAACAGGAAGTAATGTTAAGGAAATAAATTGATAAAGGTTTTCCTGGTTACCCCTAACAACCAACCGACAATCCAATTCCTATGCTGTCCATTGGTTGGAGAGGAGAACGAAACACTCCATATAAGAGTGCGGAAACATCTACCTAGTGGAAGCATTTTAAAATCTTGAGGGAAAGCCCAGACAGGAAAGCTCAAAGTGGACAATATCTTAAAGATGTAGAGACCTCTCCCTAGGGAAGTTCGGAAGAGAAAACCCAAAAAAGACTATCTAGTGGTGGATTTGGGCTATTACACCATGTGTCTTAGGGCCATCTTAGTTATAAAGTGATAATCTATTCTGCTTCAATACCTGCTAAGGGGTATGCTGCTGCTCTTTCCTTGCTTTAGTTGAAAAGATTAATCGTGCACATCATTTAGGAATCTACATATGAATACTAGTGCTGTCCGTATATTTTCTTGGAATCCTAACATGTGTTCTGTTTTTTATCCTCTCCCCGAGAACCAATTTTAGTGCAATTATTGGTTCTTGATTGCATCTAGCACCTATATTTACTTATAATATTTTCTATGTGAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATATGCATCTCTATTTTTCCTGGTTGGAGTTGACAACGATGAAGTGAGTTAATTTCTACATTTTCTACTATTGATAATTAACTTATGCTCGCGTAGTTTCCTTTTGCCTGCAAATGATTAGTATACCATCTTGGAACTCGATATGCTTCGTAATGAAATAAGTTTATTGTGGCCCATTTTGTGGAATTTATCGGATATGCTTAACACACATTTCTATTATGCATGTGCTTATTTTCTATGAATATGTTAGACCCCCAGTTGTGGATACATACTCGAAGTTAGCTATAGTTGTATATGGATGTTAGCGGGATGTGTAGTACGGTAGTCCATCGTAGGTGTATGTCTGGCTGCTGTGTTTGGGAAGGGTTTATTAACAGCTTAGTATTCGGGTAGAAGGTAGGAAGTATTTTGTAATAAAACAGTGTTCTAGGAAGAGATTAACAACCCTCTCGAATAGGCTGGGTGTTCTGGCTATTTTGTATCGTTTTCCTACTCTTATTATCAATTCAAATAGTAAGGAAGTTGGATCCTTGCAGAATATCAATGAGAGAGCTTCTAGATGGCAGTATCAGAGAGCTTCTATGGCTCCTATATTTTCTTTTGATTCCTCTCTCAAACATTTCCTTTCCGTTTCTTGGTATTTCAATGTTGCAGAATGAACTCGCAATTTTGGAATTCATTCACCTGTTGGTTGAAACCATGGACCGCCATTTCGGGAATGTGGTAAGCCCTCGTGTTCGATCTGAGATTATGTCTTCCGAACTTCGTTTGCTTTTTCGTTTCTTTTGGGAGTTTATATCCTTGATGAGTTTCCTTTTCATCTATCAACGAAAAAAAAAACTGTTTCTAGTTCAAAAGAAATCTGAGATTATGAGTTCTGAATGATGTTTCCTTCATGGATTTTACTGAATTGTCCGATTGACTTGCAGTGCGAGCTAGATATAATGTTTCATCTTGAGAAAGCACATTTCATGCTGGAAGAGATGGTGATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTTTATCCCCAATACAACTGATGGAGAAATCATCATGAAAAATCTACGAATTGTAATGTTTGGTGCAAAATCTTGGCTGTCCTTGTACTCCATTAAAGCTATCGACTTGATGTTAATGAATTTATTTGATTGTGCTCTGTTCAGCCACTTGGTAAAATGCATGTGATAGATCTCAACATCAATCCAAGCCAATTGAAGCTTAATCCATCAACTTTTAGAGTTTCCCAAATTGATTTTACAACTTTTAGGTTTTAGGCTGCTTGGTTAGTGATTTTATAATACAATTTTTAATACGAGGGTTTCAATCTTTGATAATATATTTAT

mRNA sequence

TCTTCCTCGCGCGATCGATTTAGGCTTTTTGTTTTTCGTCTGCGCGAGTTTCATCGAGTTTGTGAAAGGCAAAATGGGGATCAGATTCATTCTGATGGTGAACAAGCAGGGCCAAACCCGCCTCGCTCAGTATTACGAAAATCTTACCCTCGAGGAACGTCGAGCTCTTGAGGGTGAAATCGTTCGCAAATGCCTCGCTCGTAACGAACAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATATGCATCTCTATTTTTCCTGGTTGGAGTTGACAACGATGAAAATGAACTCGCAATTTTGGAATTCATTCACCTGTTGGTTGAAACCATGGACCGCCATTTCGGGAATGTGTGCGAGCTAGATATAATGTTTCATCTTGAGAAAGCACATTTCATGCTGGAAGAGATGGTGATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTTTATCCCCAATACAACTGATGGAGAAATCATCATGAAAAATCTACGAATTGTAATGTTTGGTGCAAAATCTTGGCTGTCCTTGTACTCCATTAAAGCTATCGACTTGATGTTAATGAATTTATTTGATTGTGCTCTGTTCAGCCACTTGGTAAAATGCATGTGATAGATCTCAACATCAATCCAAGCCAATTGAAGCTTAATCCATCAACTTTTAGAGTTTCCCAAATTGATTTTACAACTTTTAGGTTTTAGGCTGCTTGGTTAGTGATTTTATAATACAATTTTTAATACGAGGGTTTCAATCTTTGATAATATATTTAT

Coding sequence (CDS)

ATGGGGATCAGATTCATTCTGATGGTGAACAAGCAGGGCCAAACCCGCCTCGCTCAGTATTACGAAAATCTTACCCTCGAGGAACGTCGAGCTCTTGAGGGTGAAATCGTTCGCAAATGCCTCGCTCGTAACGAACAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATATGCATCTCTATTTTTCCTGGTTGGAGTTGACAACGATGAAAATGAACTCGCAATTTTGGAATTCATTCACCTGTTGGTTGAAACCATGGACCGCCATTTCGGGAATGTGTGCGAGCTAGATATAATGTTTCATCTTGAGAAAGCACATTTCATGCTGGAAGAGATGGTGATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTTTATCCCCAATACAACTGATGGAGAAATCATCATGA

Protein sequence

MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

Homology

[Close]

BLAST of Cp4.1LG18g03930 vs. ExPASy Swiss-Prot
Match: O82201 (AP-4 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At2g19790 PE=1 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-71
Identity = 134/142 (94.37%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFF+VGVD+DENELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKS 143
           NGCIVETSK+NILSPIQLM+K+
Sbjct: 121 NGCIVETSKANILSPIQLMDKA 142

[Close]

BLAST of Cp4.1LG18g03930 vs. ExPASy Swiss-Prot
Match: Q9Y587 (AP-4 complex subunit sigma-1 OS=Homo sapiens OX=9606 GN=AP4S1 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.3e-43
Identity = 77/141 (54.61%), Postives = 118/141 (83.69%), Query Frame = 0


Query: 3   IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE++ + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETSKSNILSPIQLMEKSS 144
           CIVET+++ IL+P+ +++K S
Sbjct: 122 CIVETNRARILAPLLILDKMS 142

[Close]

BLAST of Cp4.1LG18g03930 vs. ExPASy Swiss-Prot
Match: Q3ZBB6 (AP-4 complex subunit sigma-1 OS=Bos taurus OX=9913 GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.9e-43
Identity = 77/141 (54.61%), Postives = 118/141 (83.69%), Query Frame = 0


Query: 3   IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE++ + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETSKSNILSPIQLMEKSS 144
           CIVET+++ IL+P+ +++K S
Sbjct: 122 CIVETNRARILAPLLILDKMS 142

[Close]

BLAST of Cp4.1LG18g03930 vs. ExPASy Swiss-Prot
Match: Q9WVL1 (AP-4 complex subunit sigma-1 OS=Mus musculus OX=10090 GN=Ap4s1 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-42
Identity = 77/141 (54.61%), Postives = 117/141 (82.98%), Query Frame = 0


Query: 3   IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE++ + +R  LE E+ + CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETSKSNILSPIQLMEKSS 144
           CIVET+++ IL+P+ +++K S
Sbjct: 122 CIVETNRARILAPLLILDKLS 142

[Close]

BLAST of Cp4.1LG18g03930 vs. ExPASy Swiss-Prot
Match: Q54NZ4 (AP-4 complex subunit sigma OS=Dictyostelium discoideum OX=44689 GN=ap4s1 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-40
Identity = 84/141 (59.57%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M I++ L+VN +G+TRL+QYYE++  EER A+E EI+RKCL+R E QCSFVE+++YK++Y
Sbjct: 1   MAIKYFLLVNIRGKTRLSQYYESIPFEERPAMESEIIRKCLSRTEIQCSFVEYKDYKVIY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           R+YA+LFF+VGVD  ENELAILE IH  VE +D  F NV    IMF+L+KAHF+L+EMV 
Sbjct: 61  RKYATLFFIVGVDTTENELAILELIHNYVEILDSCFDNV----IMFNLDKAHFILDEMVS 120

Query: 121 NGCIVETSKSNILSPIQLMEK 142
           NG IVE SK +IL  + L+ K
Sbjct: 121 NGDIVEISKQHILEFVNLLYK 137

[Close]

BLAST of Cp4.1LG18g03930 vs. NCBI nr
Match: XP_004135683.1 (AP-4 complex subunit sigma [Cucumis sativus] >XP_008450804.1 PREDICTED: AP-4 complex subunit sigma [Cucumis melo] >XP_022960614.1 AP-4 complex subunit sigma [Cucurbita moschata] >XP_022987894.1 AP-4 complex subunit sigma [Cucurbita maxima] >XP_023515579.1 AP-4 complex subunit sigma [Cucurbita pepo subsp. pepo] >XP_038878646.1 AP-4 complex subunit sigma [Benincasa hispida] >TYK10132.1 AP-4 complex subunit sigma [Cucumis melo var. makuwa] >KGN66196.1 hypothetical protein Csa_007414 [Cucumis sativus])

HSP 1 Score: 286 bits (733), Expect = 1.66e-97
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 143
           NGCIVETSKSNILSPIQLMEKSS
Sbjct: 121 NGCIVETSKSNILSPIQLMEKSS 143

[Close]

BLAST of Cp4.1LG18g03930 vs. NCBI nr
Match: XP_022144808.1 (AP-4 complex subunit sigma [Momordica charantia])

HSP 1 Score: 283 bits (725), Expect = 2.76e-96
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 143
           NGCIVETSKSNILSPIQLMEKSS
Sbjct: 121 NGCIVETSKSNILSPIQLMEKSS 143

[Close]

BLAST of Cp4.1LG18g03930 vs. NCBI nr
Match: XP_023908431.1 (AP-4 complex subunit sigma [Quercus suber] >XP_030954485.1 AP-4 complex subunit sigma [Quercus lobata] >KAF3960306.1 hypothetical protein CMV_014970 [Castanea mollissima] >KAF3974064.1 hypothetical protein CMV_002575 [Castanea mollissima])

HSP 1 Score: 281 bits (718), Expect = 3.22e-95
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 143
           NGCIVETSK+NIL PIQLMEKSS
Sbjct: 121 NGCIVETSKTNILQPIQLMEKSS 143

[Close]

BLAST of Cp4.1LG18g03930 vs. NCBI nr
Match: KAF7847725.1 (hypothetical protein BT93_L2687 [Corymbia citriodora subsp. variegata] >KAF8034203.1 hypothetical protein BT93_C0475 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 280 bits (716), Expect = 6.50e-95
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLAR EQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 143
           NGCIVETSKSNIL+PIQLMEKSS
Sbjct: 121 NGCIVETSKSNILTPIQLMEKSS 143

[Close]

BLAST of Cp4.1LG18g03930 vs. NCBI nr
Match: XP_015899491.1 (AP-4 complex subunit sigma [Ziziphus jujuba])

HSP 1 Score: 280 bits (715), Expect = 9.24e-95
Identity = 139/143 (97.20%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDN+ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNEENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 143
           NGCIVETSKSNIL+PIQLM+KSS
Sbjct: 121 NGCIVETSKSNILAPIQLMDKSS 143

[Close]

BLAST of Cp4.1LG18g03930 vs. ExPASy TrEMBL
Match: A0A6J1JK41 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111485299 PE=3 SV=1)

HSP 1 Score: 286 bits (733), Expect = 8.04e-98
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 143
           NGCIVETSKSNILSPIQLMEKSS
Sbjct: 121 NGCIVETSKSNILSPIQLMEKSS 143

[Close]

BLAST of Cp4.1LG18g03930 vs. ExPASy TrEMBL
Match: A0A5D3CFV6 (AP complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002750 PE=3 SV=1)

HSP 1 Score: 286 bits (733), Expect = 8.04e-98
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 143
           NGCIVETSKSNILSPIQLMEKSS
Sbjct: 121 NGCIVETSKSNILSPIQLMEKSS 143

[Close]

BLAST of Cp4.1LG18g03930 vs. ExPASy TrEMBL
Match: A0A0A0M1T6 (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_1G575120 PE=3 SV=1)

HSP 1 Score: 286 bits (733), Expect = 8.04e-98
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 143
           NGCIVETSKSNILSPIQLMEKSS
Sbjct: 121 NGCIVETSKSNILSPIQLMEKSS 143

[Close]

BLAST of Cp4.1LG18g03930 vs. ExPASy TrEMBL
Match: A0A6J1HBI1 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111461350 PE=3 SV=1)

HSP 1 Score: 286 bits (733), Expect = 8.04e-98
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 143
           NGCIVETSKSNILSPIQLMEKSS
Sbjct: 121 NGCIVETSKSNILSPIQLMEKSS 143

[Close]

BLAST of Cp4.1LG18g03930 vs. ExPASy TrEMBL
Match: A0A1S3BQ09 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103492280 PE=3 SV=1)

HSP 1 Score: 286 bits (733), Expect = 8.04e-98
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKSS 143
           NGCIVETSKSNILSPIQLMEKSS
Sbjct: 121 NGCIVETSKSNILSPIQLMEKSS 143

[Close]

BLAST of Cp4.1LG18g03930 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 270.4 bits (690), Expect = 8.3e-73
Identity = 134/142 (94.37%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFF+VGVD+DENELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKS 143
           NGCIVETSK+NILSPIQLM+K+
Sbjct: 121 NGCIVETSKANILSPIQLMDKA 142

[Close]

BLAST of Cp4.1LG18g03930 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.3e-30
Identity = 67/139 (48.20%), Postives = 95/139 (68.35%), Query Frame = 0


Query: 3   IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           IRFIL+ N+QG+TRLA+YY  L   E+  +E E+ R  + R+ +  +FVE R +K++YRR
Sbjct: 2   IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYRR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA LFF V VD  +NELA LE IHL VE +D  F NVCELD++F+  K + +L+E ++ G
Sbjct: 62  YAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121

Query: 123 CIVETSKSNILSPIQLMEK 142
            + ETSK  I+  +  +EK
Sbjct: 122 ELQETSKRAIIERMSELEK 140

[Close]

BLAST of Cp4.1LG18g03930 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-28
Identity = 58/139 (41.73%), Postives = 96/139 (69.06%), Query Frame = 0


Query: 3   IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I F+L+V++QG+ RL ++Y   T +ER  +  E+    L R  + C+F+E R YK+VY+R
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YASL+F + +D  +NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 62  YASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 123 CIVETSKSNILSPIQLMEK 142
            + E+SK  +   I   ++
Sbjct: 122 ELQESSKKTVARIISAQDQ 140

[Close]

BLAST of Cp4.1LG18g03930 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-28
Identity = 58/139 (41.73%), Postives = 96/139 (69.06%), Query Frame = 0


Query: 3   IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I F+L+V++QG+ RL ++Y     +ER  +  E+    L R  + C+FVE R YK+VY+R
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YASL+F + +D ++NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 62  YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 123 CIVETSKSNILSPIQLMEK 142
            + E+SK  +   I   ++
Sbjct: 122 ELQESSKKTVARIISAQDQ 140

[Close]

BLAST of Cp4.1LG18g03930 vs. TAIR 10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-24
Identity = 54/144 (37.50%), Postives = 96/144 (66.67%), Query Frame = 0


Query: 3   IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNY-----K 62
           I+ ++M+N QG+ RLA++Y+ L +E+++ L   +     +R E   +F+E  +      +
Sbjct: 2   IKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDSR 61

Query: 63  IVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEE 122
           +VY+ YA+L+F++  D  ENELA+L+ I +LVET+D+ F NVCELDI+F+  K H +L+E
Sbjct: 62  LVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLDE 121

Query: 123 MVMNGCIVETSKSNILSPIQLMEK 142
           +V  G ++ETS + ++  ++ + K
Sbjct: 122 IVFGGQVLETSSAEVMKAVEEISK 145

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g03930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82201	1.2e-71	94.37	AP-4 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At2g19790 PE=1 SV=...	[more]
Q9Y587	2.3e-43	54.61	AP-4 complex subunit sigma-1 OS=Homo sapiens OX=9606 GN=AP4S1 PE=1 SV=1	[more]
Q3ZBB6	3.9e-43	54.61	AP-4 complex subunit sigma-1 OS=Bos taurus OX=9913 GN=AP4S1 PE=2 SV=1	[more]
Q9WVL1	2.5e-42	54.61	AP-4 complex subunit sigma-1 OS=Mus musculus OX=10090 GN=Ap4s1 PE=2 SV=1	[more]
Q54NZ4	1.4e-40	59.57	AP-4 complex subunit sigma OS=Dictyostelium discoideum OX=44689 GN=ap4s1 PE=3 SV...	[more]

BLAST of Cp4.1LG18g03930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135683.1	1.66e-97	100.00	AP-4 complex subunit sigma [Cucumis sativus] >XP_008450804.1 PREDICTED: AP-4 com...	[more]
XP_022144808.1	2.76e-96	99.30	AP-4 complex subunit sigma [Momordica charantia]	[more]
XP_023908431.1	3.22e-95	97.90	AP-4 complex subunit sigma [Quercus suber] >XP_030954485.1 AP-4 complex subunit ...	[more]
KAF7847725.1	6.50e-95	97.90	hypothetical protein BT93_L2687 [Corymbia citriodora subsp. variegata] >KAF80342...	[more]
XP_015899491.1	9.24e-95	97.20	AP-4 complex subunit sigma [Ziziphus jujuba]	[more]

BLAST of Cp4.1LG18g03930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JK41	8.04e-98	100.00	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111485299 PE=3 SV=1	[more]
A0A5D3CFV6	8.04e-98	100.00	AP complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0M1T6	8.04e-98	100.00	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_1G575120 PE=3 SV=1	[more]
A0A6J1HBI1	8.04e-98	100.00	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111461350 PE=3 SV=1	[more]
A0A1S3BQ09	8.04e-98	100.00	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103492280 PE=3 SV=1	[more]

BLAST of Cp4.1LG18g03930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19790.1	8.3e-73	94.37	SNARE-like superfamily protein	[more]
AT1G47830.1	2.3e-30	48.20	SNARE-like superfamily protein	[more]
AT2G17380.1	1.3e-28	41.73	associated protein 19	[more]
AT4G35410.2	1.3e-28	41.73	Clathrin adaptor complex small chain family protein	[more]
AT3G50860.1	4.2e-24	37.50	Clathrin adaptor complex small chain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 3..141 e-value: 1.2E-46 score: 158.2
None	No IPR available	GENE3D	3.30.450.60		coord: 2..143 e-value: 6.3E-66 score: 223.0
None	No IPR available	PANTHER	PTHR11753:SF50	AP COMPLEX SUBUNIT SIGMA	coord: 1..142
None	No IPR available	CDD	cd14832	AP4_sigma	coord: 4..141 e-value: 1.46633E-96 score: 272.184
IPR016635	Adaptor protein complex, sigma subunit	PIRSF	PIRSF015588	AP_complex_sigma	coord: 2..143 e-value: 4.1E-58 score: 193.5
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 1..142
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 3..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g03930.1	Cp4.1LG18g03930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016020	membrane