Cp4.1LG18g02060 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g02060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG18: 3672352 .. 3674030 (-)
RNA-Seq ExpressionCp4.1LG18g02060
SyntenyCp4.1LG18g02060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGTACATCAGTTTTCTGTTAGTCTCACATGGCTAGTTGAAATAAAAATAGAAGGAATTAGAATCTCTCTCTTTCTCGTCCTTTTCACTTTTCCACTCCTTCCATCTCAGCATGTAAACATCGAGTTCAGGAAAGAAATAAAGGAATAGATTTGTAGTTTTCATGCCAGGGATGATAAAAACATTGAGGAAAATAAGGATAAAGATCCCAAGGATGTAACTAAGTGACTCTTTTCCAGGGATGATGCTCAATTATTGTGAGATCCCATGTCGGTTGGAGAGGGAAATGAAACATTCCTTATAAGGGTGTGGAAACCACTTCTTAGTAGACGCGTTTTAAAACTTCAAGGGGAAGTCCAAAAGAGAAAGTCCAAAGAGGACAGTATCAGCAAACAGTGTGCTTGGGCTGTTACAAATGGTATCAGAGCCAGACACTGGGCGGTGTGTTAGCGAGGATGATGGGCCCCGAAGGGGGGTGGATTGTGGGATCCTACATCGATTGGAGAGAGGAAAGAAGCATTCCTTATAAGGGTGTGGAAACCTTTCTTTAGTAGACATGTTTTAAAACTTTGAGAAGAAGCCCAAAAGGGAAAGCTCAAATAGGACAATATCTGCTAGCGGTGGGCTTGACAATTATGTAGTATTAGATTTTCCTCGTTCAAAATAAAATTCCAATAGTTGATTGAAGTATTTCAATATTCAAAGTGGTAGAAAATAGATCTCCAGGGAGTTTTGGCTCCAATATATGACTTCGGTTACTTCTGTGTATGATTAATCGTGTAAAGTTTCCTAAAAATATCGTATACATGGCTGCGCTTACCTCTGGTTGACATCAACTGTTTGGAGATGTATGACAGATAAAATTGCTTTGGTGATGTATTCTTTTAATTTTCAAGTGACTTTATTATATTAGACTTGCAGTTCAGCGGGGATGTGCTCATGGTGCTACTAAAGCATGGTGGACTGATGGGAGTGAGTGTGGTTCAACGGTGGATTGCTTTGACATTGACGGAGATGACCTACAGTGTGGAGCCTTCCATATATCTATAGGAATGGAAGAATATATTCAGTTCTACTTCTATCAGCACTCTTCTGGGGAGAGTTCTGTTGCTTGCCTTATATGAGCATCTCATGAGATAGGCTATATTGTGGAAAGGTCCCATCTACTTTCCGATTCGGTTGAGAATATTCGTAACAGCTCAAGCCCACCGCTAGCATATATTGTCTTCTTTGAACTTTTTCTTTCGGTTTCCTCTCAAATTTTAAAACGTGTCTACTACGGAGAGGGTTTAGCACTACTCCGACCAGTGTCTTGCCCCGTCTAGCGATTCGCTCTGGTACCATTTAAAACCTTGAGAGGAAGCCCTTGACGGAGAGTCCAAAGAGGATAATATTTGTTAGCAGTGAGCTTGGGTTATTACAAACGGTATCAGAGTCTCTCCTTAGTACACGCGTTTTAAAATCTTGAGAGGAAGCCCGGAAGAAAAACTGTCTAGGGTAATCAATGCTTTCCACCTATGAAACTCGGAGTTGCTTATATAATTACTTTTACATGAATTGCTCAAGCAGGAAAATTGGCTTGATTGTTGTCTGGGAGGAAGCAGCTTGACAAGGCACAGGTTGATAGAGATTTTGTTCGACCTGTTTTAACCTTTCGTGTTGCATCAAGGGAATGA

mRNA sequence

ATGTATCGGGGATGTGCTCATGGTGCTACTAAAGCATGGTGGACTGATGGGAGTGAGTGTGGTTCAACGGTGGATTGCTTTGACATTGACGGAGATGACCTACAGAAGCAGCTTGACAAGGCACAGGTTGATAGAGATTTTGTTCGACCTGTTTTAACCTTTCGTGTTGCATCAAGGGAATGA

Coding sequence (CDS)

ATGTATCGGGGATGTGCTCATGGTGCTACTAAAGCATGGTGGACTGATGGGAGTGAGTGTGGTTCAACGGTGGATTGCTTTGACATTGACGGAGATGACCTACAGAAGCAGCTTGACAAGGCACAGGTTGATAGAGATTTTGTTCGACCTGTTTTAACCTTTCGTGTTGCATCAAGGGAATGA

Protein sequence

MYRGCAHGATKAWWTDGSECGSTVDCFDIDGDDLQKQLDKAQVDRDFVRPVLTFRVASRE
Homology
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BLAST of Cp4.1LG18g02060 vs. NCBI nr
Match: KAG7023823.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.7 bits (143), Expect = 1.91e-08
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 11  KAWWTDGSECGSTVDCFDIDGDDLQ 35
           +AWWTDGSECGSTVDCFDIDGDDLQ
Sbjct: 734 EAWWTDGSECGSTVDCFDIDGDDLQ 758

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g02060 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g02060 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023823.11.91e-0896.00Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
BLAST of Cp4.1LG18g02060 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g02060 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g02060.1Cp4.1LG18g02060.1mRNA