Cp4.1LG18g01690 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g01690
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	exosome complex component RRP45A-like
Location	Cp4.1LG18: 3333993 .. 3345404 (+)
RNA-Seq Expression	Cp4.1LG18g01690
Synteny	Cp4.1LG18g01690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTTTCGAAGAGAGGGAGACTTGAGCTAAGTACCCAAAACTTTGTCCATTTCAGTTCCTCAGCCCTACCTGGTTCAGACTCATCAAGTCCAAATCCTTTCTCCATCGGACTCTCTCATGGTTCCTCCAAATTCCCACTGAAATTCTCAAGGTTTACGTATGTAATCAGCCCATCACTCTTCTTCTTCAACACTACTGCCCAATTTTCAAACCCTACTGGAGCTTGTTCTCATGGATTCCCTCCGTTCCACTTACAGAGATGAAGACGATGAAGAAGACGAGTCCGTTCCCGCCGCTGAAATCGACCCACCGGAGCTTCCTGAACCACCAATGGATGCGAATGTTAGCGGCTCCTCAACAGAGCCCCAGGATGGTACCAGACAAGACCCACCTGATGCTTCTGATGAAATCTCCGAAGAGGAACCGGCTTCTGATGACACTGAGAAATCGGCTAAATTAGCGAAGTCACCTGGGAACGACGACGACGATGACGAAAACCCACCTACGAAGAAGCGGAAGCAATTGTCTTCGCTTAATCAGCCTGTGGAGGAGGAGAAATCGCCATTGCTTGAATCGGATACTGCTAAGAACAATGGTTCGGCTAGTGGTAATGCTGCACAGGCGGCAACGGCTTTGAATCCGAAGAAATCGAAGAAGAAGAACAATAATGTTTGGGTTACGAAGTCGACTCGGAAGGGGAAAAAGAAGAACAAAGCTAATAACAATCACAATGCACCCACTGAGGATCCTGTCTTGATCACTCCAGTTCCGAGGTTCCCTGATAAAGGGGATGACAATTCCGATATGCAAATATGTTTGTCAAAGGTTTATAAGGCGGAGAAAGTTGAATTGAGTGATGACAGAATGAGTGCTGGTAGTACAAAGGGGTATAGAATGGTGAGGGCCACTAGAGGGGTGGAGGAAGGGGCGTGGTATTTTGAAATCAAGGTGGTGAGCTTGGGGGAGACTGGACATACTCGGCTCGGATGGTCGACGGAGAAAGGGGACTTGCAGGCTCCGGTCGGGTACGACGGGAATAGCTTTGGGTACAGAGATATTGATGGAAGTAAGGTGCATAAGGCTTTAAGGGAGAAATATGGAGAGGAGGGGTATAAGGAAGGTGATATCATTGGTTTCTATATCAATTTGCCTGATGGGGCTTTATATGCGCCCAAGCCGCCACACTTTGTTTGGTATAAGGGGCAGAGGTACATTTGTGCTCCTGAAGGGAAAGAGGAGCCGCCTAAAGTAGTTCCTGGTATGTTGATTGCTTTACTAAATGCTGACAACTGATGCATTCTATGTTCATTTTTCTTTCAATTGAAGTTGTTGAGGTTCTGCTGTATGTTCATGCAAGCTCCATTGAAAACATTGAAACTGCGTTCTGAGTGTTTTATAATAGTTCATTGCCTCTTAACTTGTGCTTTTGATATGCCAATTCCTTTTCAATTTTCGATTCGATAGTTGGAGTTAGAAAAAGTGTTGTGTTCTTAATATTTAGACTGTTTTAGGACTTCCTAGTGTTAGCTAGTCGTGCTGCCCTGTGAAACAAGTGATGAGAAAGAACAAAGTTTTGTCCCTACATGAGGCTAGATGTAATAGCCCAAGCCAACCGCTAGTAGATATTGTCCTTTTTGGGTTTTCCTTCAAGTTTTTTAAAACGCGTCTGCTACGGAGAGGTTTTCACATCCTTATAAAGGATGATTCTTTCTCCTCCCCAACCTATGTGGGATTCCATAATCCACCCCCCTTCGGAGCCCAGCATCCTCGCTGGTACTCGTTCCTTTCTCCAATTGATGTGGGACGCGGGCACATTGCCTCATGTCCACTCCCCTTCGGGGCTTAGCCTCCTTGCTTGCACATTGCCCGGTGTCTGGCTCTGATACCATTTGTGACAGCCCAGGCTCACCTTTAGCATATATTGTTCTCTTTGGGCTTTTCTTTCGGTCTTCCCCTCAAGGTTTTTAAAATACGTTCGCTTGAGAGAGGTCTCCACACCCTTATAAAGGGTGTTTCATTCTCCTCCCGGTTTCAGCCAATTTCTGTCCCCGAAGTAGGCTTCTCTTGAGCTGCAATTGGTCAATCATGAAATTATAGCTTTTGTTATTATTGTTATTTTACTTGAAGTTGCTTGCTACTTTAGTGACATTCATTTTAAACTAAGGCTCCTCTAGGATTATGCATCTGGTCGTGTTTTCATCGAAATTTGAGTAATTTTGACACTAACATAGTTGGATGATTCTTTACGAATTTGGGCACTACGTATGGTGTTGCATTTGAGGAGAAAGGTTCTTTTTCTTTAGTTTTTATTGTCTGTGATTGGTTGTGTTTGTTTAGTACGTCATAAAACTCAAGCCATGCTCCAAAGAAGTGGGTCAAGAGGGTAGTGAAGGACGGAGATAGCTCATGAAAAGCAATGTAATAGCTCAAACCCACCACTAGTAGATACTATCCTTTTTGGGGTTTCCCTTTCGGGCTGGATTGTGAGACCCCACATCGATTGAAGAGAGGAACGAGTCCAACAAGGACTCTGGGCCCCGAAGGGGGGTGGATTCCGAGATCCCACATCGGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACACGTTTTAAAACTTTGAGGGGAAGTCCGAAAGGGAAAGCCCAATATTTGCTAGCGGTGGGCTTGAGCTGTTACAAATGATATACAAGCCAAACATTGGGCGGTGTGCCAGCGAGGACGTTGGGTCTTGAAGGGGGGTGGATTGCGAGATCCCACATCGGTTAGAGAAGGGAATGAAACATTTTTTATAAGGGTGTTGAAACCTCTCCCTAGCCTATGCATTTAAAACCTTGAGGGGAAGTCCGGAAGGGAAAACCCAAAGAAGACAATATCTGCTAGTGGTGGACTTGAGTTGTTACAAGCCGTGTAAATATACAACTGCAGGGATGCGAGGTGGGTGTTTGAGTATGAACAGTATGAGTCAACTGTCATGTTGGTTATATAGCGATGAACTGAGATTCAGGAACTCGATATAGATCCCCCATAAATCTGTTGCATTTTGCCTTACATTTTTCATTCTCTTATCTCCCTTATGAAGTTACATGATGCGTCCGACATTCATTATGCAGGAAGCGAGATTTCGTTCTTCAAAAATGGAGTATGCCAAGGGGTTGCGTTCACGGATCTGAACGGAGGTCGCTACTATCCTGCAGCCTCCATGTACACTCTTCCTAATCAACCAAATTGTGTAGTCAAGTTCAACTTCGGCCCAGATTTCGAATCCTTTCCCGAGGACTTTCAGGGTCGTCCTTCGCCCCAACCCATGGTCGATGTACCTTACCATGGCTTCGACAACCAACCTGAAAACGGAGTTTCGAGCGAGAAAAACACAGTAGTTACCAAGTAGTACCATCTTTTCTTTCATGTGTACTCTTAGTTTATGTGCATTAGGACTGACAATGGGAAGATGAGTGGTGTAAATTTTTCTAGTTACAGCTTACAATCAGCAGAAGAAAGCAATGTTCTATGTGAGTAGTGATAGACACTGCATGAGCCCAAACAACATTTGTCTGATTTGCTTATAAGTTCTTGAAGGCCAGACTCATGAGATATCCTAGTCATTTCATTTTTTTTTTCTCTTTTAGTAGGGACGTTTTAGCTATCGAGTTATGTTGAGTTAAGGCGTTTTAACTATTGGGTCAAGACGTTTTAACTATCAGGGTATGTTGGGTTAAGGCGTTTTAACTATCGAGTTATATTGACGTTGATTATTAATGTATTAATATTTGGACACTTTCATTGGGCTTCCCCAAAAGATTCGGGACACCAACACTTAATCGAGGCTCGACTCCTTGGAGTCTTCTCTTGTAACTTTTCGAGAATGTGTTCGAGGACTTTGATACCATGTTAGATGAATACAATTCTTCACAATAGTATGATATTGTCTAGTTTGAGCTCCTCCAAAAGGCTTCATACCAATGGAGAATGTATTATTTGATTATAAACCCATGACCATTTTCTAAATTAACAGATGTGGGACACTTTCATCCGACATGAATTAATAAAAAAAAAAAATAATAATAAAGGAAAAAAAAAAAAAAACTAAAAGTTTAGATGAAAAAATGTGTTATTTTTGTAACCTAAACATTTGGTCATTGAGCCAAAATAGGTTCGTCTCTTCGTCTCTTCGTCTCTGCAAATCAACACCCTCGTCGGTGGCGGCCGAACCTCACTCACCTCTCTCCCGGCGGTCACACGAAGCCCCAGCTCTTTTCTTGGCCATCTCTTCTTCTAACCCAGGAAAATAGCTCTCTTTCTGTAAACAAAAGCCCCCCAACTAGCAGCAACTGCGGCTAATACTCCCTCATCCAGCCTCTTGTCTTTAGAAGAAGCTTCTCTGGTTGTCAGCATTTTCGGTCAGTTCTGAATAAATCAGACCCATAAAATGTTTTTACTTGTTTCTTCAATTGTTGGGTTGTTTTAGTCTGTGGTGTGCTGTTCTTTATCGATTTAACATGATATAATACCTTTCTGACGTTGTAGTTTGAATTTTCAGGAAAAGGGTGTACTAAATGGAGCAGAGATTAGCCAATGCGTGGCGTCTCTCTGCGAACGAGAAGAAATTCATTGAAACAGCCCTTCTTTCGGATTTGAGGGTCGATGGTCGTCGCCCATTTGATTACCGTAATCTCACCATCAACTTTGGCAAGTAATGTTTCTCACTATGGGTTTTCGCTTTCTGGTATGATTTTTTGTGGGTGGTGATTGGAATGAATTTTTGTGCAGAGATGATGGTTCTTCAGAGGTGCAGCTTGGCCAGACTCACGCAATGGGCTTTGTGACTGCTCAGCTAGTTCAACCGTATAGGGATCGTCCTAATGAGGGCACTCTTTCTATATTTACTGAGTTCTCTCCTATGGCTGATCCCTCATTTGAGCCTGGCCGTCCTGGAGAGTCTGCTGTCGAGCTTGGACGTGTAATAGACCGTGGTCTCCGGTAATTCTCTTTTTCGTTCGTTTATTTGCTTTCTCTATATGCTGGCATTGAATTCTTTGTGTGAATTGTGAGTAGAAGCTGTGTTACCTCAAGTTTTGGTGATATGAGGTTAGTTTATTACATGATTTAAGTGCAAACGGCGTATCCGAGGTTGAACAAAGGTGTTTGATTCATTCATTTCTGATCCGTGATGTGATCGGATGCGTTTATCCATATTCGTAATTGATGCGTGATTAGTCATTTGCTGAATTGTTTCAACAATCTGTTGAATCCCAATGAAAGAGTTTCTAAAGTCATCTTATATTCTGATAATGTCTCTACCTAAATCGAGCGCAACTGTACATCGAAACATCGAAAACTAAGGTTGTTAGTTCTTCACTGCTTAGTTCGGAGGTTACCGTTAGTTATATGGAGTTAATGTTAAGCATCAATATATAATTCAGTTGCTTAATAGACAGAATAAATTGAGTACAATGCTTTTCTCTAGCTTCATAGTCTGCAAGTAACCTATTACATCAAGCTATACACTGTAATCTAAGGTTGGAGGTATTAATGCAGGGAGAGTAGGGCAGTGGATATGGAATCACTTTGTGTGGTTTCAGGCAAGTCTGTGTGGGCCGTTCGAGTCGATCTTCACATTTTAGATAATGGGGGGTAAGCTTTTGAATATTTATTTTATTTTATTTTGCGTATTGTTATAATGATGCTAATACATGGTATTTAACAATCCTGCAAGCAGAAACCTTGTGGATGCAGCTAATATTGCTGCTTTGGCTGCTCTATCGACTTTTCGAAGACCTGAATGCTCACTGGGGGGAGATGACGGTCAGGAAGTGATAATTCATCCACCTGAGGTAAGTTCTTCAAAATTCTCTTGGAATTTAACTTGAAGGGCATCCTGTTCAATTGATGTGACATTATTTTCTTAAAGGCATGCTTCTATATACGAACACAACGATCCCACATCTAATCGTGACCATTATTATAATTATTTTATAAGAAACTTGTTTACATTAGAAAGAAGGGAAAAACAGCTTAAGGGTTGGAAGAGGGAACCCCCACCCACAAATAAACTAAAGAAGTGCTTTCCAATGTTCATGGACATTGGAAGACTATAGTTTTACCAAGGAATTTCCTGCGATAATACACCACTAATAAGAGGGGTGCTCTACATACCTACCAAATTTTTTAAACATACGAAGGTTTGTTTTCAACCGAATTTGCTGAAGGAGCGCTCTAACTACATAATTCAATGGAATTTGAGCTCTTTTAGAAAACCTCCAGTCAGTAAGGACTTTAAACAATCAACCATCTATTTGCTTAGGGAAACAACATGACATACCAACAGTATCCAAAAGACAGGATCAACCACGAGCAGAAATAGAACTATATGATAGATGGATTTTTCATTTTTAAGGAAAAGGCTGCATTGAAGGAGAAAGGGCCAGATTTATAGACTTCCTTGGGAGGAATCTTGGGTTATTAATCTTTTGTAAGCCAAGGACCACCGAAACACTTCGACTTTCTTTGGAATTCTAAATTTCCAGATTAACGAAATGGGAGAGGACTTCAAAATAGGGGTGGACTCCGAGAGCTTAAAAAAAGGCAGACTTAGGGGAGAACATTCCTCGTTTCCCAAGCGACCAACAGACCTTGTCATCACCTTCCCCCAAGCATACAACATCCATCATTTGAACTTAAGCTCAACCATCTTTTCATTTTTCTCTTTGAGCTTTGATTTTGAAGAACTTTTGTAACTCGGCAATATTTTGCATAGCTGGTGCCCCTTAACCTCAAGGGCGTTTTCCCCAATCCACCTACCTTTCCAAAACTAGATTCTCCTCCCTTGATAAGCTTTGAGAACCAATAAACAGAAAAAGTTAAATGGTTGACTGTGAAGGAGTTTAAGTGTGATGTTCCACATTGGTTGGGGAGGAGAACAAATCACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGCAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGTCGTTACAAATGGTATCAGAGCCAGTCACCGGACGATGTGCCGGCCTTCTTGTTATTCCCCTTAGGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGGCCCCAAAGGGGGGTGGATTTGGGGACGGTCCCACATCAATTGGATAAAGGAACGAGTACCAGCGAGGACGCTGGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAATCACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGCAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGTCGTTACAAATGGTATCAGAGCCAGTCACCGGACGATGTGCCGGCCTTCTTGTTATTCCCCTTAGGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGGCCCCAAAGGGGGGTGGATTTGGGGACGGTCCCACATCAATTGGATAAAGGAACGAGTACCAGCGAGGACGCTGGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAATCACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGCAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGTCGTTACATTAAGACAATTGGTTTTTCTCGACAAGAAGCAAGAATGGTTACTTTTTGTCGAGAGAAGTAACCATTCTTACTTTTTAAGACGATTGGTTTTTCTCTCGACAAGAAGAACCGATTTGCATAGTCAGATGGTTGACCGAGAAGTAACCATTCTTGCTTCTCTCATTTTCAATTGGTTTTTAGATGGAACCCCATGTTGACCTGATGTAGTATCAGAGCCCATTAAGGCAAACAAGTATTTTGTTAAAAAAAAAGGGATCCGACCCAAGAATGGTGAACTCAAAGAGGTACCATCTTGAGGGGTCATGTTGAGGATCCCACAGTAGAAAAATGGAGAGCTCTCACAATCTTTAAAAGATACATTAGTTATTGCTCTCATTGTCAATTAGTCTTGAGATCTAATCCCTCATTTATCCAATAATCCTTTGTCTTAAGTTTTTTCTTTTGTGTGAAACAAATAATTGTGTTTGGGTTTACCTTCTGCCCTAGTTGCCTATATCCTAGAATGTATCACAGGGATGTTGCTATTTGACAGGTCAGGGAGCCACTTCCGTTGATCATACACCATCTCCCTATTGCAGTAACCTTTGCATTTTTTCGTAGTGAGAGCACCCTGGTAGGCTCGAATTCTTTAAATAGGTTGTGTAAAGAGTTCAGTTATATTAGCAGGGTTGTCTAATTTTTGGGTGCTGTGCAGGTGATAGATCCAACACACTATGAAGAGGCTGTTATGGGGGGGAGAATGACCGTCACACTTAACGCTAATAACGATGTTTGCGCTATTCAAAAAGCAGGAGGAGAGGGTGTACTTCAGAGTGTGATCATGCAATGTCTTCGAATTGCTTGTGTCAAAGCTGGTGATATTACAACTAAAATAAAAAATGCAGTGAGTTTCTTTTTTCTAATTGTTTTTTAATATGACTTAATGATATAGCATCGTACTCTGTTTTACCCTGTTTTACCTTTTGTAAATTACAGTTTTACTGTATGTTTAGGCCAGCCGCATTTTGTTGGGATGTTTGAATTTACAGAAAAAAAATTAGACTGAAGAAAACTGTAAAACAAATTGACACAGTACTCTAATACAAATTTACAAGAAAGGATAAGACCTCCAAAGAAGACGCTCTAAAAAAAAAAAAGAACACTTATTAGACACTCCAAAGAAGAACACCTAGAGCCTAGAGGCACTGAAATGTGAGGGCAATTGAAAGCCATTTTCCCAAGATTTCTATGAACCTCTAAAGATTCCTCTGTCTATCTCGATCTATGACTTCCTCAAAGTAGCGATGACCTTCTAAATAATACATTCCTAGGGAAGGGGGATGTACGAGCATCTCCTCCACGATGTCCAGATGGTGTGAGATAGTCTTTATACTATTCTTACTTTTGTGGGGGATGTACGAGCATCTCCTCAACGATGTCCTGATGGTTTGAGATAGTCTTTATACTATTTCTTATTTTTTTGTTCTTTATTTTAGATATGCTGTTGTGTTTTTATTGAAGTGTTTTTATTGAATAATGCAAAAACCATCATTAACATTAGTCCATTTTGGGAAATTTATTATATGATTTCTCCTTAAACTATATGGTGGAGACAATTAATTTTTCTTCTGATATTTTGTGGATATTACACATTGAACCTCCCCTTTTACTCATTTCCACCATAATCTTATGTTAGGTTGAGACTTACAATTCAGCTAGACAATTGCGGAAGATTAAGCGCCACCCTTCGGTTAATTTGGATGTTGGTAGAGCTGTGGCTAATCTGAAGGATAGCCAAAAGAGTATCAATGAATTTTCTGACAGATTGAAATTGAATTCTGAAGAGAGTATCGCCAGTCAAAGCATTGAGAGTGATGTTGGATCAACAAATCAAGGACAATTAAACAAGAGAGATTTAGATGCTAAGAACTTCATTGGGGGCCCTTCAAGCTGGTAAAGTGTTATCTTGATAATGGTTACCCACCTATTTTCTCTTATTCAATATGTTCTTCCCCAAAAGAAAATCTTAGGCGTGAACCGTGAAGTTTTGTAATTGTTTCATACTTCGAATAGATATTGCAATCTTAATTAGATTAAGTCGTCAATATCATCAGGTGAATGTACAATACTGAAAGCATGACAATATCACACACCGATCTTCATGCCATCTGACATGCCATCTGCCATCTGACAGCGTTGTTTTTCTTTTTCCCAGGGACCCATACTCCAAAGGTGTTGATTCAGATTTCTTGAAAGCTACTTTAGCTGCACGTGGTACTTCGCTGTGACATTATAATTCGTGTTTTGCTTTAAGCTTTCTACGATTATTATTATTGTTAGTATATATATGAATATGGTTCATCTATTTTGATTGAATATTAATTTGGGTTAGTTGGAATATGCGTAGTTTATTCACATTGGCTAATTACTTTTTACGAACACGAGCATAACTCATCTGTTTAATCTGTTTAAGATATATGCCTTAGACCAAAGGGTCAGAGGTTTGAATCCCTCCTCCCAATGCTGTGTCAACTTGGAAAAGAAACTACCTGTGATGCATTTTCAGGCTTCCAGAATGAAGAGTTTATGTCGATATATTTACTGTTTTCATCGTTATTCGGGTTCAAGCGTATCTTAGAAACCAAATATGCTGATGATATGGCATCCAGTAGTATGAAGTTCACTGCTTATAAAAATGAACTTGCAAAATCATTCTCTGCCATTCTCTTTGTGCACAAGGACATAAGCTTACTTTCAATCAACTAGTCTGCCTTTTCTTATGATAGCTTGTTGCAGGAAATCAAACCACAACGAAGAAACAGGACGTGAGCGATGAAACGATGTCCTCTGAGACTAAGCTTGACGAACAAGAAGCCAAAGTCGATCAGGCAAATTTACCTCCTGTTGCTGCTGCTAAAGTTTTGTCAGAAGAAAATGAGAAGAAGACGCTGAAAGATGCCGTGAAGCCAAAGAACAAGAGGAAAAAGAAGAAGACCAACATCCCCAACATTGCAGATTAGTTCAATGGTAACATGATCTTCTGAAATGTATGTCCACTTGACCTATGCAAATGCTTTTGTGTTCTTGGTTATGCATTCTTCTCTGGTATTTGAAAATATCTCTTAATTGCAACTTTCTTTTTAGAGTTCATGAAGATGTAAATTTTGAAGCTCAACTTCGAACCACTAGAATAGATCAAACGGAAGCATCTCTTATCAAACATGGAGAGCGTTCATGCCCGGTGCCCGGTTTCATCAAGGTTCGTTCAAAGAAATTCGAAACTCGAACTTGGTGAGGTCCAAAGAAATCTGCATTTGGATGAATTCTTATCACAGAAATCTATGATGATGCTGGTGAAAAGGTAATGCAATTTCTGTTATGTTCATCATCTTACAATTGGAATCTTTATTTAGAGTAACATAGAGTGTTTAGAATCGTAGGCTTTTTCCTTGTTTGATTGTAAGTTCTGGCTGCTCCACTGAGATGATTTTCATTATTGTTTAGAGAACCCTTTTTCATATTACATTGATTATAAACTTTTTCGATGTCATATTTGAGGGAAAACAATGGTAGCCATTGAAATTCCTCTCCCCACCCACTTGGAGTTGACTTATGAGTTATGTGCAGGAATATTCTCAAGACAATCAATCTAAACTTTAGAACTA

mRNA sequence

AATTTTTTCGAAGAGAGGGAGACTTGAGCTAAGTACCCAAAACTTTGTCCATTTCAGTTCCTCAGCCCTACCTGGTTCAGACTCATCAAGTCCAAATCCTTTCTCCATCGGACTCTCTCATGGTTCCTCCAAATTCCCACTGAAATTCTCAAGGTTTACGTATGTAATCAGCCCATCACTCTTCTTCTTCAACACTACTGCCCAATTTTCAAACCCTACTGGAGCTTGTTCTCATGGATTCCCTCCGTTCCACTTACAGAGATGAAGACGATGAAGAAGACGAGTCCGTTCCCGCCGCTGAAATCGACCCACCGGAGCTTCCTGAACCACCAATGGATGCGAATGTTAGCGGCTCCTCAACAGAGCCCCAGGATGGTACCAGACAAGACCCACCTGATGCTTCTGATGAAATCTCCGAAGAGGAACCGGCTTCTGATGACACTGAGAAATCGGCTAAATTAGCGAAGTCACCTGGGAACGACGACGACGATGACGAAAACCCACCTACGAAGAAGCGGAAGCAATTGTCTTCGCTTAATCAGCCTGTGGAGGAGGAGAAATCGCCATTGCTTGAATCGGATACTGCTAAGAACAATGGTTCGGCTAGTGGTAATGCTGCACAGGCGGCAACGGCTTTGAATCCGAAGAAATCGAAGAAGAAGAACAATAATGTTTGGGTTACGAAGTCGACTCGGAAGGGGAAAAAGAAGAACAAAGCTAATAACAATCACAATGCACCCACTGAGGATCCTGTCTTGATCACTCCAGTTCCGAGGTTCCCTGATAAAGGGGATGACAATTCCGATATGCAAATATGTTTGTCAAAGGTTTATAAGGCGGAGAAAGTTGAATTGAGTGATGACAGAATGAGTGCTGGTAGTACAAAGGGGTATAGAATGGTGAGGGCCACTAGAGGGGTGGAGGAAGGGGCGTGGTATTTTGAAATCAAGGTGGTGAGCTTGGGGGAGACTGGACATACTCGGCTCGGATGGTCGACGGAGAAAGGGGACTTGCAGGCTCCGGTCGGGTACGACGGGAATAGCTTTGGGTACAGAGATATTGATGGAAGTAAGGTGCATAAGGCTTTAAGGGAGAAATATGGAGAGGAGGGGTATAAGGAAGGTGATATCATTGGTTTCTATATCAATTTGCCTGATGGGGCTTTATATGCGCCCAAGCCGCCACACTTTGTTTGGTATAAGGGGCAGAGGTACATTTGTGCTCCTGAAGGGAAAGAGGAGCCGCCTAAAGTAGTTCCTGGAAGCGAGATTTCGTTCTTCAAAAATGGAGTATGCCAAGGGGTTGCGTTCACGGATCTGAACGGAGGTCGCTACTATCCTGCAGCCTCCATGTACACTCTTCCTAATCAACCAAATTGTGTAGTCAAGTTCAACTTCGGCCCAGATTTCGAATCCTTTCCCGAGGACTTTCAGGGTCGTCCTTCGCCCCAACCCATGGTCGATGTACCTTACCATGGCTTCGACAACCAACCTGAAAACGGAGTTTCGAGCGAGAAAAACACAGGACGTTTTAGCTATCGAAGATTAGCCAATGCGTGGCGTCTCTCTGCGAACGAGAAGAAATTCATTGAAACAGCCCTTCTTTCGGATTTGAGGGTCGATGGTCGTCGCCCATTTGATTACCGTAATCTCACCATCAACTTTGGCAAAGATGATGGTTCTTCAGAGGTGCAGCTTGGCCAGACTCACGCAATGGGCTTTGTGACTGCTCAGCTAGTTCAACCGTATAGGGATCGTCCTAATGAGGGCACTCTTTCTATATTTACTGAGTTCTCTCCTATGGCTGATCCCTCATTTGAGCCTGGCCGTCCTGGAGAGTCTGCTGTCGAGCTTGGACGTGTAATAGACCGTGGTCTCCGGGAGAGTAGGGCAGTGGATATGGAATCACTTTGTGTGGTTTCAGGCAAGTCTGTGTGGGCCGTTCGAGTCGATCTTCACATTTTAGATAATGGGGGAAACCTTGTGGATGCAGCTAATATTGCTGCTTTGGCTGCTCTATCGACTTTTCGAAGACCTGAATGCTCACTGGGGGGAGATGACGGTCAGGAAGTGATAATTCATCCACCTGAGGTCAGGGAGCCACTTCCGTTGATCATACACCATCTCCCTATTGCAGTAACCTTTGCATTTTTTCGTAGTGAGAGCACCCTGGTGATAGATCCAACACACTATGAAGAGGCTGTTATGGGGGGGAGAATGACCGTCACACTTAACGCTAATAACGATGTTTGCGCTATTCAAAAAGCAGGAGGAGAGGGTGTACTTCAGAGTGTGATCATGCAATGTCTTCGAATTGCTTGTGTCAAAGCTGGTGATATTACAACTAAAATAAAAAATGCAGTTGAGACTTACAATTCAGCTAGACAATTGCGGAAGATTAAGCGCCACCCTTCGGTTAATTTGGATGTTGGTAGAGCTGTGGCTAATCTGAAGGATAGCCAAAAGAGTATCAATGAATTTTCTGACAGATTGAAATTGAATTCTGAAGAGAGTATCGCCAGTCAAAGCATTGAGAGTGATGTTGGATCAACAAATCAAGGACAATTAAACAAGAGAGATTTAGATGCTAAGAACTTCATTGGGGGCCCTTCAAGCTGGGACCCATACTCCAAAGGTGTTGATTCAGATTTCTTGAAAGCTACTTTAGCTGCACGTGGAAATCAAACCACAACGAAGAAACAGGACGTGAGCGATGAAACGATGTCCTCTGAGACTAAGCTTGACGAACAAGAAGCCAAAGTCGATCAGGCAAATTTACCTCCTGTTGCTGCTGCTAAAGTTTTGTCAGAAGAAAATGAGAAGAAGACGCTGAAAGATGCCGTGAAGCCAAAGAACAAGAGGAAAAAGAAGAAGACCAACATCCCCAACATTGCAGATTAGTTCAATGGTAACATGATCTTCTGAAATAGTTCATGAAGATGTAAATTTTGAAGCTCAACTTCGAACCACTAGAATAGATCAAACGGAAGCATCTCTTATCAAACATGGAGAGCGTTCATGCCCGGTGCCCGGTTTCATCAAGGTTCGTTCAAAGAAATTCGAAACTCGAACTTGGTGAGGTCCAAAGAAATCTGCATTTGGATGAATTCTTATCACAGAAATCTATGATGATGCTGGTGAAAAGGTAATGCAATTTCTGTTATGTTCATCATCTTACAATTGGAATCTTTATTTAGAGTAACATAGAGTGTTTAGAATCGTAGGCTTTTTCCTTGTTTGATTGTAAGTTCTGGCTGCTCCACTGAGATGATTTTCATTATTGTTTAGAGAACCCTTTTTCATATTACATTGATTATAAACTTTTTCGATGTCATATTTGAGGGAAAACAATGGTAGCCATTGAAATTCCTCTCCCCACCCACTTGGAGTTGACTTATGAGTTATGTGCAGGAATATTCTCAAGACAATCAATCTAAACTTTAGAACTA

Coding sequence (CDS)

ATGGATTCCCTCCGTTCCACTTACAGAGATGAAGACGATGAAGAAGACGAGTCCGTTCCCGCCGCTGAAATCGACCCACCGGAGCTTCCTGAACCACCAATGGATGCGAATGTTAGCGGCTCCTCAACAGAGCCCCAGGATGGTACCAGACAAGACCCACCTGATGCTTCTGATGAAATCTCCGAAGAGGAACCGGCTTCTGATGACACTGAGAAATCGGCTAAATTAGCGAAGTCACCTGGGAACGACGACGACGATGACGAAAACCCACCTACGAAGAAGCGGAAGCAATTGTCTTCGCTTAATCAGCCTGTGGAGGAGGAGAAATCGCCATTGCTTGAATCGGATACTGCTAAGAACAATGGTTCGGCTAGTGGTAATGCTGCACAGGCGGCAACGGCTTTGAATCCGAAGAAATCGAAGAAGAAGAACAATAATGTTTGGGTTACGAAGTCGACTCGGAAGGGGAAAAAGAAGAACAAAGCTAATAACAATCACAATGCACCCACTGAGGATCCTGTCTTGATCACTCCAGTTCCGAGGTTCCCTGATAAAGGGGATGACAATTCCGATATGCAAATATGTTTGTCAAAGGTTTATAAGGCGGAGAAAGTTGAATTGAGTGATGACAGAATGAGTGCTGGTAGTACAAAGGGGTATAGAATGGTGAGGGCCACTAGAGGGGTGGAGGAAGGGGCGTGGTATTTTGAAATCAAGGTGGTGAGCTTGGGGGAGACTGGACATACTCGGCTCGGATGGTCGACGGAGAAAGGGGACTTGCAGGCTCCGGTCGGGTACGACGGGAATAGCTTTGGGTACAGAGATATTGATGGAAGTAAGGTGCATAAGGCTTTAAGGGAGAAATATGGAGAGGAGGGGTATAAGGAAGGTGATATCATTGGTTTCTATATCAATTTGCCTGATGGGGCTTTATATGCGCCCAAGCCGCCACACTTTGTTTGGTATAAGGGGCAGAGGTACATTTGTGCTCCTGAAGGGAAAGAGGAGCCGCCTAAAGTAGTTCCTGGAAGCGAGATTTCGTTCTTCAAAAATGGAGTATGCCAAGGGGTTGCGTTCACGGATCTGAACGGAGGTCGCTACTATCCTGCAGCCTCCATGTACACTCTTCCTAATCAACCAAATTGTGTAGTCAAGTTCAACTTCGGCCCAGATTTCGAATCCTTTCCCGAGGACTTTCAGGGTCGTCCTTCGCCCCAACCCATGGTCGATGTACCTTACCATGGCTTCGACAACCAACCTGAAAACGGAGTTTCGAGCGAGAAAAACACAGGACGTTTTAGCTATCGAAGATTAGCCAATGCGTGGCGTCTCTCTGCGAACGAGAAGAAATTCATTGAAACAGCCCTTCTTTCGGATTTGAGGGTCGATGGTCGTCGCCCATTTGATTACCGTAATCTCACCATCAACTTTGGCAAAGATGATGGTTCTTCAGAGGTGCAGCTTGGCCAGACTCACGCAATGGGCTTTGTGACTGCTCAGCTAGTTCAACCGTATAGGGATCGTCCTAATGAGGGCACTCTTTCTATATTTACTGAGTTCTCTCCTATGGCTGATCCCTCATTTGAGCCTGGCCGTCCTGGAGAGTCTGCTGTCGAGCTTGGACGTGTAATAGACCGTGGTCTCCGGGAGAGTAGGGCAGTGGATATGGAATCACTTTGTGTGGTTTCAGGCAAGTCTGTGTGGGCCGTTCGAGTCGATCTTCACATTTTAGATAATGGGGGAAACCTTGTGGATGCAGCTAATATTGCTGCTTTGGCTGCTCTATCGACTTTTCGAAGACCTGAATGCTCACTGGGGGGAGATGACGGTCAGGAAGTGATAATTCATCCACCTGAGGTCAGGGAGCCACTTCCGTTGATCATACACCATCTCCCTATTGCAGTAACCTTTGCATTTTTTCGTAGTGAGAGCACCCTGGTGATAGATCCAACACACTATGAAGAGGCTGTTATGGGGGGGAGAATGACCGTCACACTTAACGCTAATAACGATGTTTGCGCTATTCAAAAAGCAGGAGGAGAGGGTGTACTTCAGAGTGTGATCATGCAATGTCTTCGAATTGCTTGTGTCAAAGCTGGTGATATTACAACTAAAATAAAAAATGCAGTTGAGACTTACAATTCAGCTAGACAATTGCGGAAGATTAAGCGCCACCCTTCGGTTAATTTGGATGTTGGTAGAGCTGTGGCTAATCTGAAGGATAGCCAAAAGAGTATCAATGAATTTTCTGACAGATTGAAATTGAATTCTGAAGAGAGTATCGCCAGTCAAAGCATTGAGAGTGATGTTGGATCAACAAATCAAGGACAATTAAACAAGAGAGATTTAGATGCTAAGAACTTCATTGGGGGCCCTTCAAGCTGGGACCCATACTCCAAAGGTGTTGATTCAGATTTCTTGAAAGCTACTTTAGCTGCACGTGGAAATCAAACCACAACGAAGAAACAGGACGTGAGCGATGAAACGATGTCCTCTGAGACTAAGCTTGACGAACAAGAAGCCAAAGTCGATCAGGCAAATTTACCTCCTGTTGCTGCTGCTAAAGTTTTGTCAGAAGAAAATGAGAAGAAGACGCTGAAAGATGCCGTGAAGCCAAAGAACAAGAGGAAAAAGAAGAAGACCAACATCCCCAACATTGCAGATTAG

Protein sequence

MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTRQDPPDASDEISEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKNNGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVPRFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKVVSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDIIGFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFTDLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQPENGVSSEKNTGRFSYRRLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMGFVTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDMESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVIIHPPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAIQKAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKRHPSVNLDVGRAVANLKDSQKSINEFSDRLKLNSEESIASQSIESDVGSTNQGQLNKRDLDAKNFIGGPSSWDPYSKGVDSDFLKATLAARGNQTTTKKQDVSDETMSSETKLDEQEAKVDQANLPPVAAAKVLSEENEKKTLKDAVKPKNKRKKKKTNIPNIAD

Homology

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BLAST of Cp4.1LG18g01690 vs. ExPASy Swiss-Prot
Match: Q9C8J7 (Protein TRAUCO OS=Arabidopsis thaliana OX=3702 GN=TRO PE=1 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 1.3e-139
Identity = 271/428 (63.32%), Postives = 315/428 (73.60%), Query Frame = 0


Query: 14  EEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTR--QDPPDASDEISEEEP--ASDD 73
           EE++  P   ++   + E P+D ++        D  +   D    SD  SEE P  +S D
Sbjct: 84  EENDLAP---LESSGIIEEPIDTDLEKLDVVAMDVDQPGSDLKIESDSFSEEAPTTSSSD 143

Query: 74  TEKSAKL---------AKSPGNDDDDDENPPTKKRKQLSSLNQ-PVEEEKSPLLESDTAK 133
             KS KL         A      D++ ++PP KK KQL  L    V+EE+ P  E     
Sbjct: 144 NPKSPKLDSVANQNGSAMEEDEGDEEQDDPPHKKLKQLDCLTSVAVKEEEEP--EQVLPS 203

Query: 134 NNGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPV 193
                   A   A+A    KSKKKNNNVWVTKSTRKGKKK+KAN  + A  ED VLITPV
Sbjct: 204 EAMVVEEAATLVASAAKKSKSKKKNNNVWVTKSTRKGKKKSKANTPNPAAVEDKVLITPV 263

Query: 194 PRFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIK 253
           PRFPDKGDD  D++ICLSKVYKAEKVE+S+DR++AGS+KGYRMVRATRGV EGAWYFEIK
Sbjct: 264 PRFPDKGDDTPDLEICLSKVYKAEKVEISEDRLTAGSSKGYRMVRATRGVVEGAWYFEIK 323

Query: 254 VVSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDI 313
           V+SLGETGHTRLGWST+KGDLQAPVGYDGNSFG+RDIDG K+HKALRE Y EEGYKEGD+
Sbjct: 324 VLSLGETGHTRLGWSTDKGDLQAPVGYDGNSFGFRDIDGCKIHKALRETYAEEGYKEGDV 383

Query: 314 IGFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAF 373
           IGFYINLPDG  +APKPPH+V+YKGQRYICAP+ KEEPPKVVPGSEISFFKNGVCQG AF
Sbjct: 384 IGFYINLPDGESFAPKPPHYVFYKGQRYICAPDAKEEPPKVVPGSEISFFKNGVCQGAAF 443

Query: 374 TDLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQ 428
           TD+ GGRYYPAASMYTLP+Q NC+VKFNFGP FE FPEDF GR +P+PM +VPYHGF+ +
Sbjct: 444 TDIVGGRYYPAASMYTLPDQSNCLVKFNFGPSFEFFPEDFGGRATPRPMWEVPYHGFNGR 503

[Close]

BLAST of Cp4.1LG18g01690 vs. ExPASy Swiss-Prot
Match: Q9M209 (Exosome complex component RRP45B OS=Arabidopsis thaliana OX=3702 GN=RRP45B PE=2 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 3.6e-139
Identity = 270/454 (59.47%), Postives = 328/454 (72.25%), Query Frame = 0


Query: 437 RLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMGF 496
           RLAN WRL+ NE KF+ETAL S+LRVDGR  +DYR LTI FGK+ GSSEVQLGQTH MGF
Sbjct: 4   RLANMWRLTVNESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGQTHVMGF 63

Query: 497 VTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDM 556
           VTAQLVQPY+DRPNEG+LSIFTEFSPMADPSFEPGRPGESAVELGR+IDRGLRESRAVD 
Sbjct: 64  VTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDT 123

Query: 557 ESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVIIH 616
           ESLCV++GK VW+VR+DLHILDNGGNLVDAANIAALAAL TFRRP+C++GG++GQEVIIH
Sbjct: 124 ESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIH 183

Query: 617 PPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAIQ 676
           P E REPLPLIIHHLPIA TF FF   + +V+DPT+ EEAVM GRMTVT+NAN D+CAIQ
Sbjct: 184 PLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQ 243

Query: 677 KAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKRHPSVNLD--VGR 736
           K G EGV QSVI+ CLR+A  +A   T  I+  VE YN  R L+K+KRHP++      G 
Sbjct: 244 KPGEEGVNQSVILHCLRLASSRAAATTKIIREEVEAYNCERSLQKVKRHPTLAKSEVSGP 303

Query: 737 AVANLKDSQKSIN---------EFSDRLKLNSEESIASQSIESDVGSTNQGQLNKRDLDA 796
            VA  ++ +KS +         E  +RLKL++EE  +S                 ++ +A
Sbjct: 304 TVAVKEEHRKSSDQERAAEISREHVERLKLSTEEVRSS-----------------KEEEA 363

Query: 797 KNFIGGPSSWDPYSKGVDSDFLKATLAARGNQTTTKKQDVSDETMSSETKLDEQEAKVDQ 856
            NF GGPS+WDPYS+ +D D LK +LA+RG+  T   +  S + M+      +   ++  
Sbjct: 364 ANFKGGPSNWDPYSEAMDVDSLKVSLASRGDPVT---KSSSTKKMNGSGNAQKVGVEISV 423

Query: 857 ANLPPVAAAKVLSEENEKKTLKDAVKPKNKRKKK 880
             +      K    ++ + TLKDAVKPK KRK K
Sbjct: 424 EEVTGELGKKDTKHKDGEMTLKDAVKPKKKRKNK 437

[Close]

BLAST of Cp4.1LG18g01690 vs. ExPASy Swiss-Prot
Match: Q9LDM2 (Exosome complex component RRP45A OS=Arabidopsis thaliana OX=3702 GN=RRP45A PE=2 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 4.5e-121
Identity = 212/289 (73.36%), Postives = 244/289 (84.43%), Query Frame = 0


Query: 437 RLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMGF 496
           RL N WRL+ NE KF+E+AL S+LRVDGR  +DYR LTI FGK+ GSS+VQLGQTH M F
Sbjct: 4   RLNNMWRLTVNESKFVESALQSELRVDGRGLYDYRKLTIKFGKEYGSSQVQLGQTHVMAF 63

Query: 497 VTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDM 556
           VTAQLVQPY+DRP+EG+ SIFTEFSPMADPSFEPG PGESAVELGR+IDR LRESRAVD 
Sbjct: 64  VTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDT 123

Query: 557 ESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVIIH 616
           ESLCV++GK VW+VR+DLHILDNGGNLVDAAN+AALAAL TFRRP+C++GGD+ Q+VIIH
Sbjct: 124 ESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIH 183

Query: 617 PPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAIQ 676
           PPE REPLPLIIHHLPIA TF FF   S LV+DPT+ EEAVM GRMTVT+NAN D+CAIQ
Sbjct: 184 PPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDICAIQ 243

Query: 677 KAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKRH 726
           K G EGV QSVI+ CLR+A  +A   T  I++AVE YN  R  +K+KRH
Sbjct: 244 KPGEEGVNQSVILHCLRLASSRASATTKIIRDAVEAYNRERSSQKVKRH 292

[Close]

BLAST of Cp4.1LG18g01690 vs. ExPASy Swiss-Prot
Match: Q06265 (Exosome complex component RRP45 OS=Homo sapiens OX=9606 GN=EXOSC9 PE=1 SV=3)

HSP 1 Score: 256.1 bits (653), Expect = 1.4e-66
Identity = 125/275 (45.45%), Postives = 186/275 (67.64%), Query Frame = 0


Query: 444 LSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMGFVTAQLVQ 503
           LS  E++F+  A+    R+DGR+ +DYRN+ I+FG D G   V+LG+T  +G V+ +LV 
Sbjct: 6   LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65

Query: 504 PYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDMESLCVVS 563
           P  +R  EG L    E S MA P+FEPGR  +  V+L R+++R LR S+ +D ESLCVV+
Sbjct: 66  PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVA 125

Query: 564 GKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVIIHPPEVREP 623
           G+ VW +RVDLH+L++ GN++DAA+IAA+ AL  FRRP+ S+ GD   EV ++ PE R+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 185

Query: 624 LPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAIQKAGGEGV 683
           +PL IHH+PI V+FAFF+  + L++DP   EE VM G + + +N + ++C IQ +GG  +
Sbjct: 186 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 245

Query: 684 LQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQ 719
           L+  +++C +IA VK  +IT  I  A+E     R+
Sbjct: 246 LKDQVLRCSKIAGVKVAEITELILKALENDQKVRK 277

[Close]

BLAST of Cp4.1LG18g01690 vs. ExPASy Swiss-Prot
Match: Q3SWZ4 (Exosome complex component RRP45 OS=Bos taurus OX=9913 GN=EXOSC9 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.2e-65
Identity = 124/275 (45.09%), Postives = 187/275 (68.00%), Query Frame = 0


Query: 444 LSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMGFVTAQLVQ 503
           LS  E++F+  A+    R+DGR+ +DYRN+ I+FG D G   V+LG+T  +G V+ +LV 
Sbjct: 6   LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65

Query: 504 PYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDMESLCVVS 563
           P  +R  EG L    E S MA P+FEPGR  +  V+L R+++R LR S+ +D ESLCVV+
Sbjct: 66  PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125

Query: 564 GKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVIIHPPEVREP 623
           G+ VW +RVDLH+L++ GN++DAA+IAA+ AL  FRRP+ S+ GD   EV ++  E R+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTLEERDP 185

Query: 624 LPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAIQKAGGEGV 683
           +PL IHH+PI V+FAFF+  + L++DP+  EE VM G + + +N + ++C IQ +GG  +
Sbjct: 186 VPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSSGGIML 245

Query: 684 LQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQ 719
           L+  +++C +IA VK  +IT  I+ A+E     R+
Sbjct: 246 LKDQVLRCSKIAGVKVVEITELIQKALENDQKVRK 277

[Close]

BLAST of Cp4.1LG18g01690 vs. NCBI nr
Match: KAG7023847.1 (Protein TRAUCO, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 873 bits (2255), Expect = 3.66e-312
Identity = 435/436 (99.77%), Postives = 436/436 (100.00%), Query Frame = 0


Query: 1   MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTRQDPPDASDEI 60
           MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTRQDPPDASDEI
Sbjct: 1   MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTRQDPPDASDEI 60

Query: 61  SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN 120
           SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN
Sbjct: 61  SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN 120

Query: 121 NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP 180
           NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP
Sbjct: 121 NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP 180

Query: 181 RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV 240
           RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV
Sbjct: 181 RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV 240

Query: 241 VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII 300
           VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII
Sbjct: 241 VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII 300

Query: 301 GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT 360
           GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT
Sbjct: 301 GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT 360

Query: 361 DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP 420
           DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP
Sbjct: 361 DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP 420

Query: 421 ENGVSSEKNTGRFSYR 436
           ENGVS+EKNTGRFSYR
Sbjct: 421 ENGVSNEKNTGRFSYR 436

[Close]

BLAST of Cp4.1LG18g01690 vs. NCBI nr
Match: XP_023516889.1 (exosome complex component RRP45A-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 871 bits (2251), Expect = 2.62e-311
Identity = 452/453 (99.78%), Postives = 453/453 (100.00%), Query Frame = 0


Query: 436 RRLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMG 495
           +RLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMG
Sbjct: 3   QRLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMG 62

Query: 496 FVTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVD 555
           FVTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVD
Sbjct: 63  FVTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVD 122

Query: 556 MESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVII 615
           MESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVII
Sbjct: 123 MESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVII 182

Query: 616 HPPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAI 675
           HPPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAI
Sbjct: 183 HPPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAI 242

Query: 676 QKAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKRHPSVNLDVGRA 735
           QKAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKRHPSVNLDVGRA
Sbjct: 243 QKAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKRHPSVNLDVGRA 302

Query: 736 VANLKDSQKSINEFSDRLKLNSEESIASQSIESDVGSTNQGQLNKRDLDAKNFIGGPSSW 795
           VANLKDSQKSINEFSDRLKLNSEESIASQSIESDVGSTNQGQLNKRDLDAKNFIGGPSSW
Sbjct: 303 VANLKDSQKSINEFSDRLKLNSEESIASQSIESDVGSTNQGQLNKRDLDAKNFIGGPSSW 362

Query: 796 DPYSKGVDSDFLKATLAARGNQTTTKKQDVSDETMSSETKLDEQEAKVDQANLPPVAAAK 855
           DPYSKGVDSDFLKATLAARGNQTTTKKQDVSDETMSSETKLDEQEAKVDQANLPPVAAAK
Sbjct: 363 DPYSKGVDSDFLKATLAARGNQTTTKKQDVSDETMSSETKLDEQEAKVDQANLPPVAAAK 422

Query: 856 VLSEENEKKTLKDAVKPKNKRKKKKTNIPNIAD 888
           VLSEENEKKTLKDAVKPKNKRKKKKTNIPNIAD
Sbjct: 423 VLSEENEKKTLKDAVKPKNKRKKKKTNIPNIAD 455

[Close]

BLAST of Cp4.1LG18g01690 vs. NCBI nr
Match: XP_023516888.1 (protein TRAUCO-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 861 bits (2225), Expect = 1.05e-307
Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0


Query: 1   MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTRQDPPDASDEI 60
           MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTRQDPPDASDEI
Sbjct: 1   MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTRQDPPDASDEI 60

Query: 61  SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN 120
           SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN
Sbjct: 61  SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN 120

Query: 121 NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP 180
           NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP
Sbjct: 121 NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP 180

Query: 181 RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV 240
           RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV
Sbjct: 181 RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV 240

Query: 241 VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII 300
           VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII
Sbjct: 241 VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII 300

Query: 301 GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT 360
           GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT
Sbjct: 301 GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT 360

Query: 361 DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP 420
           DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP
Sbjct: 361 DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP 420

Query: 421 ENGVSSEKNT 430
           ENGVSSEKNT
Sbjct: 421 ENGVSSEKNT 430

[Close]

BLAST of Cp4.1LG18g01690 vs. NCBI nr
Match: KAG6590196.1 (Protein TRAUCO, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 858 bits (2218), Expect = 1.21e-306
Identity = 428/430 (99.53%), Postives = 429/430 (99.77%), Query Frame = 0


Query: 1   MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTRQDPPDASDEI 60
           MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTRQDPPDASDEI
Sbjct: 1   MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTRQDPPDASDEI 60

Query: 61  SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN 120
           SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN
Sbjct: 61  SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN 120

Query: 121 NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP 180
           NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP
Sbjct: 121 NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP 180

Query: 181 RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV 240
           RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV
Sbjct: 181 RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV 240

Query: 241 VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII 300
           VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII
Sbjct: 241 VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII 300

Query: 301 GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT 360
           GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT
Sbjct: 301 GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT 360

Query: 361 DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP 420
           DLNGGRYYPAASMYTLPNQPNC VKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP
Sbjct: 361 DLNGGRYYPAASMYTLPNQPNCAVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP 420

Query: 421 ENGVSSEKNT 430
           ENGVS+EKNT
Sbjct: 421 ENGVSNEKNT 430

[Close]

BLAST of Cp4.1LG18g01690 vs. NCBI nr
Match: XP_022960791.1 (protein TRAUCO-like [Cucurbita moschata])

HSP 1 Score: 854 bits (2207), Expect = 5.65e-305
Identity = 426/430 (99.07%), Postives = 429/430 (99.77%), Query Frame = 0


Query: 1   MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTRQDPPDASDEI 60
           MDSLRSTYRDEDDEEDESVPAAEI PPELPEPPM+ANVSGSSTEPQDGTRQDPPDAS+EI
Sbjct: 1   MDSLRSTYRDEDDEEDESVPAAEIHPPELPEPPMEANVSGSSTEPQDGTRQDPPDASEEI 60

Query: 61  SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN 120
           SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN
Sbjct: 61  SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN 120

Query: 121 NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP 180
           NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP
Sbjct: 121 NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP 180

Query: 181 RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV 240
           RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV
Sbjct: 181 RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV 240

Query: 241 VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII 300
           VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII
Sbjct: 241 VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII 300

Query: 301 GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT 360
           GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT
Sbjct: 301 GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT 360

Query: 361 DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP 420
           DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP
Sbjct: 361 DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP 420

Query: 421 ENGVSSEKNT 430
           ENGVS+EKNT
Sbjct: 421 ENGVSNEKNT 430

[Close]

BLAST of Cp4.1LG18g01690 vs. ExPASy TrEMBL
Match: A0A6J1H8K9 (protein TRAUCO-like OS=Cucurbita moschata OX=3662 GN=LOC111461487 PE=4 SV=1)

HSP 1 Score: 854 bits (2207), Expect = 2.74e-305
Identity = 426/430 (99.07%), Postives = 429/430 (99.77%), Query Frame = 0


Query: 1   MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTRQDPPDASDEI 60
           MDSLRSTYRDEDDEEDESVPAAEI PPELPEPPM+ANVSGSSTEPQDGTRQDPPDAS+EI
Sbjct: 1   MDSLRSTYRDEDDEEDESVPAAEIHPPELPEPPMEANVSGSSTEPQDGTRQDPPDASEEI 60

Query: 61  SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN 120
           SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN
Sbjct: 61  SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN 120

Query: 121 NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP 180
           NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP
Sbjct: 121 NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP 180

Query: 181 RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV 240
           RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV
Sbjct: 181 RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV 240

Query: 241 VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII 300
           VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII
Sbjct: 241 VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII 300

Query: 301 GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT 360
           GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT
Sbjct: 301 GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT 360

Query: 361 DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP 420
           DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP
Sbjct: 361 DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP 420

Query: 421 ENGVSSEKNT 430
           ENGVS+EKNT
Sbjct: 421 ENGVSNEKNT 430

[Close]

BLAST of Cp4.1LG18g01690 vs. ExPASy TrEMBL
Match: A0A6J1JKQ3 (protein TRAUCO-like OS=Cucurbita maxima OX=3661 GN=LOC111485459 PE=4 SV=1)

HSP 1 Score: 849 bits (2193), Expect = 3.65e-303
Identity = 425/430 (98.84%), Postives = 426/430 (99.07%), Query Frame = 0


Query: 1   MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTRQDPPDASDEI 60
           MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDG RQDPPDAS+EI
Sbjct: 1   MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGARQDPPDASEEI 60

Query: 61  SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN 120
           SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN
Sbjct: 61  SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN 120

Query: 121 NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP 180
           NGSASGNAAQAATALNPKKSKKKNNNVW TKSTRKGKKKNKANNNHNAPTEDPVLITPVP
Sbjct: 121 NGSASGNAAQAATALNPKKSKKKNNNVWGTKSTRKGKKKNKANNNHNAPTEDPVLITPVP 180

Query: 181 RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV 240
           RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV
Sbjct: 181 RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV 240

Query: 241 VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII 300
           VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII
Sbjct: 241 VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII 300

Query: 301 GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT 360
           GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT
Sbjct: 301 GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT 360

Query: 361 DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP 420
           DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRP PQPMVDVPYHGFDNQ 
Sbjct: 361 DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPLPQPMVDVPYHGFDNQL 420

Query: 421 ENGVSSEKNT 430
           ENGVSSEKNT
Sbjct: 421 ENGVSSEKNT 430

[Close]

BLAST of Cp4.1LG18g01690 vs. ExPASy TrEMBL
Match: A0A6J1HA43 (exosome complex component RRP45A-like OS=Cucurbita moschata OX=3662 GN=LOC111461486 PE=3 SV=1)

HSP 1 Score: 845 bits (2182), Expect = 4.09e-301
Identity = 442/456 (96.93%), Postives = 448/456 (98.25%), Query Frame = 0


Query: 436 RRLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMG 495
           +RLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMG
Sbjct: 3   QRLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMG 62

Query: 496 FVTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVD 555
           FVTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESA+ELGRVIDRGLRESRAVD
Sbjct: 63  FVTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAIELGRVIDRGLRESRAVD 122

Query: 556 MESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVII 615
           MESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVII
Sbjct: 123 MESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVII 182

Query: 616 HPPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAI 675
           HPPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAI
Sbjct: 183 HPPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAI 242

Query: 676 QKAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKRHPSVNLDVGRA 735
           QKAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKRHPSVNLDVGRA
Sbjct: 243 QKAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKRHPSVNLDVGRA 302

Query: 736 VANLKDSQKSINEFSDRLKLNSEESIASQS--IESDVGSTNQGQLNKRDLDAKNFIGGPS 795
           VAN+KDSQKSINEFSDRLKLNSE+SIA QS  IESDVGSTNQGQLNKRDLDAKNFIGGPS
Sbjct: 303 VANMKDSQKSINEFSDRLKLNSEDSIAGQSRSIESDVGSTNQGQLNKRDLDAKNFIGGPS 362

Query: 796 SWDPYSKGVDSDFLKATLAARGNQTTTKKQDVSDETMSSETKLDEQEAKVDQANLPPVAA 855
           SWDPYSKGVDSDFLKATLAARGNQTTTKKQD SDETMSSETKLDEQEAKVD+ NLPPVAA
Sbjct: 363 SWDPYSKGVDSDFLKATLAARGNQTTTKKQDASDETMSSETKLDEQEAKVDEGNLPPVAA 422

Query: 856 AKVLSEENEKKTLKDAVKPKNKRKKKKTNIP-NIAD 888
            K+LSEENEKKTLKDAVKPKNKRKKKKT IP NIAD
Sbjct: 423 -KILSEENEKKTLKDAVKPKNKRKKKKTTIPPNIAD 457

[Close]

BLAST of Cp4.1LG18g01690 vs. ExPASy TrEMBL
Match: A0A6J1JG94 (exosome complex component RRP45A-like OS=Cucurbita maxima OX=3661 GN=LOC111485448 PE=3 SV=1)

HSP 1 Score: 841 bits (2173), Expect = 1.15e-299
Identity = 443/461 (96.10%), Postives = 448/461 (97.18%), Query Frame = 0


Query: 436 RRLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMG 495
           +RLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGS+EVQLGQTHAMG
Sbjct: 3   QRLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSTEVQLGQTHAMG 62

Query: 496 FVTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVD 555
           FVTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVD
Sbjct: 63  FVTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVD 122

Query: 556 MESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVII 615
           MESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVII
Sbjct: 123 MESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVII 182

Query: 616 HPPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAI 675
           HPPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAI
Sbjct: 183 HPPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAI 242

Query: 676 QKAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKRHPSVNLDVGRA 735
           QKAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIK HPSVNLDVGRA
Sbjct: 243 QKAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKHHPSVNLDVGRA 302

Query: 736 VANLKDSQ------KSINEFSDRLKLNSEESIASQS--IESDVGSTNQGQLNKRDLDAKN 795
           VAN KDSQ      KSINEFSDRLKLNSEE+IA QS  IESDVGSTNQGQLNKRDLDAKN
Sbjct: 303 VANPKDSQGVSDDQKSINEFSDRLKLNSEENIAGQSRSIESDVGSTNQGQLNKRDLDAKN 362

Query: 796 FIGGPSSWDPYSKGVDSDFLKATLAARGNQTTTKKQDVSDETMSSETKLDEQEAKVDQAN 855
           FIGGPSSWDPYSKGVDSDFLKATLAARGNQTTTKKQDVSDETMSSETKLDEQEAKVD+AN
Sbjct: 363 FIGGPSSWDPYSKGVDSDFLKATLAARGNQTTTKKQDVSDETMSSETKLDEQEAKVDEAN 422

Query: 856 LPPVAAAKVLSEENEKKTLKDAVKPKNKRKKKKTNIPNIAD 888
           LPPVAA K+LSEENEKKTLKDAVKPKNKRKKKKT IPNIAD
Sbjct: 423 LPPVAA-KILSEENEKKTLKDAVKPKNKRKKKKTTIPNIAD 462

[Close]

BLAST of Cp4.1LG18g01690 vs. ExPASy TrEMBL
Match: A0A5D3D5T3 (Protein TRAUCO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001020 PE=4 SV=1)

HSP 1 Score: 801 bits (2070), Expect = 1.63e-284
Identity = 400/430 (93.02%), Postives = 416/430 (96.74%), Query Frame = 0


Query: 1   MDSLRSTYRDEDDEEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTRQDPPDASDEI 60
           MDSLRSTY+DEDDEEDESV  +EIDPPEL +PPMDANVSGSST+PQDGTRQDPPDAS+EI
Sbjct: 1   MDSLRSTYKDEDDEEDESVRPSEIDPPELADPPMDANVSGSSTDPQDGTRQDPPDASEEI 60

Query: 61  SEEEPASDDTEKSAKLAKSPGNDDDDDENPPTKKRKQLSSLNQPVEEEKSPLLESDTAKN 120
           SEEEPASDDTEKSAKLAKSPGNDDDD E+PP KK+KQLSSLNQPVEE+KSPL  SD+AKN
Sbjct: 61  SEEEPASDDTEKSAKLAKSPGNDDDD-EDPPLKKQKQLSSLNQPVEEDKSPLPGSDSAKN 120

Query: 121 NGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPVP 180
           +GSA GNAA  ATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNN+NAPTEDPVLITPVP
Sbjct: 121 DGSAGGNAAPVATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNNNAPTEDPVLITPVP 180

Query: 181 RFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV 240
           RFPDKGDDN+DMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV
Sbjct: 181 RFPDKGDDNNDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIKV 240

Query: 241 VSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDII 300
           VSLGETGHTRLGWST+KGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGD+I
Sbjct: 241 VSLGETGHTRLGWSTDKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVI 300

Query: 301 GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT 360
           GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT
Sbjct: 301 GFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAFT 360

Query: 361 DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQP 420
           DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFE FPED QGRP PQPM++VPYHGFDNQ 
Sbjct: 361 DLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFECFPEDLQGRPLPQPMIEVPYHGFDNQV 420

Query: 421 ENGVSSEKNT 430
           ENGVSSEKNT
Sbjct: 421 ENGVSSEKNT 429

[Close]

BLAST of Cp4.1LG18g01690 vs. TAIR 10
Match: AT1G51450.1 (TRAUCO )

HSP 1 Score: 498.8 bits (1283), Expect = 8.9e-141
Identity = 271/428 (63.32%), Postives = 315/428 (73.60%), Query Frame = 0


Query: 14  EEDESVPAAEIDPPELPEPPMDANVSGSSTEPQDGTR--QDPPDASDEISEEEP--ASDD 73
           EE++  P   ++   + E P+D ++        D  +   D    SD  SEE P  +S D
Sbjct: 84  EENDLAP---LESSGIIEEPIDTDLEKLDVVAMDVDQPGSDLKIESDSFSEEAPTTSSSD 143

Query: 74  TEKSAKL---------AKSPGNDDDDDENPPTKKRKQLSSLNQ-PVEEEKSPLLESDTAK 133
             KS KL         A      D++ ++PP KK KQL  L    V+EE+ P  E     
Sbjct: 144 NPKSPKLDSVANQNGSAMEEDEGDEEQDDPPHKKLKQLDCLTSVAVKEEEEP--EQVLPS 203

Query: 134 NNGSASGNAAQAATALNPKKSKKKNNNVWVTKSTRKGKKKNKANNNHNAPTEDPVLITPV 193
                   A   A+A    KSKKKNNNVWVTKSTRKGKKK+KAN  + A  ED VLITPV
Sbjct: 204 EAMVVEEAATLVASAAKKSKSKKKNNNVWVTKSTRKGKKKSKANTPNPAAVEDKVLITPV 263

Query: 194 PRFPDKGDDNSDMQICLSKVYKAEKVELSDDRMSAGSTKGYRMVRATRGVEEGAWYFEIK 253
           PRFPDKGDD  D++ICLSKVYKAEKVE+S+DR++AGS+KGYRMVRATRGV EGAWYFEIK
Sbjct: 264 PRFPDKGDDTPDLEICLSKVYKAEKVEISEDRLTAGSSKGYRMVRATRGVVEGAWYFEIK 323

Query: 254 VVSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDI 313
           V+SLGETGHTRLGWST+KGDLQAPVGYDGNSFG+RDIDG K+HKALRE Y EEGYKEGD+
Sbjct: 324 VLSLGETGHTRLGWSTDKGDLQAPVGYDGNSFGFRDIDGCKIHKALRETYAEEGYKEGDV 383

Query: 314 IGFYINLPDGALYAPKPPHFVWYKGQRYICAPEGKEEPPKVVPGSEISFFKNGVCQGVAF 373
           IGFYINLPDG  +APKPPH+V+YKGQRYICAP+ KEEPPKVVPGSEISFFKNGVCQG AF
Sbjct: 384 IGFYINLPDGESFAPKPPHYVFYKGQRYICAPDAKEEPPKVVPGSEISFFKNGVCQGAAF 443

Query: 374 TDLNGGRYYPAASMYTLPNQPNCVVKFNFGPDFESFPEDFQGRPSPQPMVDVPYHGFDNQ 428
           TD+ GGRYYPAASMYTLP+Q NC+VKFNFGP FE FPEDF GR +P+PM +VPYHGF+ +
Sbjct: 444 TDIVGGRYYPAASMYTLPDQSNCLVKFNFGPSFEFFPEDFGGRATPRPMWEVPYHGFNGR 503

[Close]

BLAST of Cp4.1LG18g01690 vs. TAIR 10
Match: AT3G60500.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 497.3 bits (1279), Expect = 2.6e-140
Identity = 270/454 (59.47%), Postives = 328/454 (72.25%), Query Frame = 0


Query: 437 RLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMGF 496
           RLAN WRL+ NE KF+ETAL S+LRVDGR  +DYR LTI FGK+ GSSEVQLGQTH MGF
Sbjct: 4   RLANMWRLTVNESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGQTHVMGF 63

Query: 497 VTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDM 556
           VTAQLVQPY+DRPNEG+LSIFTEFSPMADPSFEPGRPGESAVELGR+IDRGLRESRAVD 
Sbjct: 64  VTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDT 123

Query: 557 ESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVIIH 616
           ESLCV++GK VW+VR+DLHILDNGGNLVDAANIAALAAL TFRRP+C++GG++GQEVIIH
Sbjct: 124 ESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIH 183

Query: 617 PPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAIQ 676
           P E REPLPLIIHHLPIA TF FF   + +V+DPT+ EEAVM GRMTVT+NAN D+CAIQ
Sbjct: 184 PLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQ 243

Query: 677 KAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKRHPSVNLD--VGR 736
           K G EGV QSVI+ CLR+A  +A   T  I+  VE YN  R L+K+KRHP++      G 
Sbjct: 244 KPGEEGVNQSVILHCLRLASSRAAATTKIIREEVEAYNCERSLQKVKRHPTLAKSEVSGP 303

Query: 737 AVANLKDSQKSIN---------EFSDRLKLNSEESIASQSIESDVGSTNQGQLNKRDLDA 796
            VA  ++ +KS +         E  +RLKL++EE  +S                 ++ +A
Sbjct: 304 TVAVKEEHRKSSDQERAAEISREHVERLKLSTEEVRSS-----------------KEEEA 363

Query: 797 KNFIGGPSSWDPYSKGVDSDFLKATLAARGNQTTTKKQDVSDETMSSETKLDEQEAKVDQ 856
            NF GGPS+WDPYS+ +D D LK +LA+RG+  T   +  S + M+      +   ++  
Sbjct: 364 ANFKGGPSNWDPYSEAMDVDSLKVSLASRGDPVT---KSSSTKKMNGSGNAQKVGVEISV 423

Query: 857 ANLPPVAAAKVLSEENEKKTLKDAVKPKNKRKKK 880
             +      K    ++ + TLKDAVKPK KRK K
Sbjct: 424 EEVTGELGKKDTKHKDGEMTLKDAVKPKKKRKNK 437

[Close]

BLAST of Cp4.1LG18g01690 vs. TAIR 10
Match: AT3G60500.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 497.3 bits (1279), Expect = 2.6e-140
Identity = 270/454 (59.47%), Postives = 328/454 (72.25%), Query Frame = 0


Query: 437 RLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMGF 496
           RLAN WRL+ NE KF+ETAL S+LRVDGR  +DYR LTI FGK+ GSSEVQLGQTH MGF
Sbjct: 4   RLANMWRLTVNESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGQTHVMGF 63

Query: 497 VTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDM 556
           VTAQLVQPY+DRPNEG+LSIFTEFSPMADPSFEPGRPGESAVELGR+IDRGLRESRAVD 
Sbjct: 64  VTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDT 123

Query: 557 ESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVIIH 616
           ESLCV++GK VW+VR+DLHILDNGGNLVDAANIAALAAL TFRRP+C++GG++GQEVIIH
Sbjct: 124 ESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIH 183

Query: 617 PPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAIQ 676
           P E REPLPLIIHHLPIA TF FF   + +V+DPT+ EEAVM GRMTVT+NAN D+CAIQ
Sbjct: 184 PLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQ 243

Query: 677 KAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKRHPSVNLD--VGR 736
           K G EGV QSVI+ CLR+A  +A   T  I+  VE YN  R L+K+KRHP++      G 
Sbjct: 244 KPGEEGVNQSVILHCLRLASSRAAATTKIIREEVEAYNCERSLQKVKRHPTLAKSEVSGP 303

Query: 737 AVANLKDSQKSIN---------EFSDRLKLNSEESIASQSIESDVGSTNQGQLNKRDLDA 796
            VA  ++ +KS +         E  +RLKL++EE  +S                 ++ +A
Sbjct: 304 TVAVKEEHRKSSDQERAAEISREHVERLKLSTEEVRSS-----------------KEEEA 363

Query: 797 KNFIGGPSSWDPYSKGVDSDFLKATLAARGNQTTTKKQDVSDETMSSETKLDEQEAKVDQ 856
            NF GGPS+WDPYS+ +D D LK +LA+RG+  T   +  S + M+      +   ++  
Sbjct: 364 ANFKGGPSNWDPYSEAMDVDSLKVSLASRGDPVT---KSSSTKKMNGSGNAQKVGVEISV 423

Query: 857 ANLPPVAAAKVLSEENEKKTLKDAVKPKNKRKKK 880
             +      K    ++ + TLKDAVKPK KRK K
Sbjct: 424 EEVTGELGKKDTKHKDGEMTLKDAVKPKKKRKNK 437

[Close]

BLAST of Cp4.1LG18g01690 vs. TAIR 10
Match: AT3G60500.3 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 497.3 bits (1279), Expect = 2.6e-140
Identity = 270/454 (59.47%), Postives = 328/454 (72.25%), Query Frame = 0


Query: 437 RLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMGF 496
           RLAN WRL+ NE KF+ETAL S+LRVDGR  +DYR LTI FGK+ GSSEVQLGQTH MGF
Sbjct: 4   RLANMWRLTVNESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGQTHVMGF 63

Query: 497 VTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDM 556
           VTAQLVQPY+DRPNEG+LSIFTEFSPMADPSFEPGRPGESAVELGR+IDRGLRESRAVD 
Sbjct: 64  VTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDT 123

Query: 557 ESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVIIH 616
           ESLCV++GK VW+VR+DLHILDNGGNLVDAANIAALAAL TFRRP+C++GG++GQEVIIH
Sbjct: 124 ESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIH 183

Query: 617 PPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAIQ 676
           P E REPLPLIIHHLPIA TF FF   + +V+DPT+ EEAVM GRMTVT+NAN D+CAIQ
Sbjct: 184 PLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQ 243

Query: 677 KAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKRHPSVNLD--VGR 736
           K G EGV QSVI+ CLR+A  +A   T  I+  VE YN  R L+K+KRHP++      G 
Sbjct: 244 KPGEEGVNQSVILHCLRLASSRAAATTKIIREEVEAYNCERSLQKVKRHPTLAKSEVSGP 303

Query: 737 AVANLKDSQKSIN---------EFSDRLKLNSEESIASQSIESDVGSTNQGQLNKRDLDA 796
            VA  ++ +KS +         E  +RLKL++EE  +S                 ++ +A
Sbjct: 304 TVAVKEEHRKSSDQERAAEISREHVERLKLSTEEVRSS-----------------KEEEA 363

Query: 797 KNFIGGPSSWDPYSKGVDSDFLKATLAARGNQTTTKKQDVSDETMSSETKLDEQEAKVDQ 856
            NF GGPS+WDPYS+ +D D LK +LA+RG+  T   +  S + M+      +   ++  
Sbjct: 364 ANFKGGPSNWDPYSEAMDVDSLKVSLASRGDPVT---KSSSTKKMNGSGNAQKVGVEISV 423

Query: 857 ANLPPVAAAKVLSEENEKKTLKDAVKPKNKRKKK 880
             +      K    ++ + TLKDAVKPK KRK K
Sbjct: 424 EEVTGELGKKDTKHKDGEMTLKDAVKPKKKRKNK 437

[Close]

BLAST of Cp4.1LG18g01690 vs. TAIR 10
Match: AT3G12990.1 (ribonuclease PH45A )

HSP 1 Score: 437.2 bits (1123), Expect = 3.2e-122
Identity = 212/289 (73.36%), Postives = 244/289 (84.43%), Query Frame = 0


Query: 437 RLANAWRLSANEKKFIETALLSDLRVDGRRPFDYRNLTINFGKDDGSSEVQLGQTHAMGF 496
           RL N WRL+ NE KF+E+AL S+LRVDGR  +DYR LTI FGK+ GSS+VQLGQTH M F
Sbjct: 4   RLNNMWRLTVNESKFVESALQSELRVDGRGLYDYRKLTIKFGKEYGSSQVQLGQTHVMAF 63

Query: 497 VTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDM 556
           VTAQLVQPY+DRP+EG+ SIFTEFSPMADPSFEPG PGESAVELGR+IDR LRESRAVD 
Sbjct: 64  VTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDT 123

Query: 557 ESLCVVSGKSVWAVRVDLHILDNGGNLVDAANIAALAALSTFRRPECSLGGDDGQEVIIH 616
           ESLCV++GK VW+VR+DLHILDNGGNLVDAAN+AALAAL TFRRP+C++GGD+ Q+VIIH
Sbjct: 124 ESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIH 183

Query: 617 PPEVREPLPLIIHHLPIAVTFAFFRSESTLVIDPTHYEEAVMGGRMTVTLNANNDVCAIQ 676
           PPE REPLPLIIHHLPIA TF FF   S LV+DPT+ EEAVM GRMTVT+NAN D+CAIQ
Sbjct: 184 PPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDICAIQ 243

Query: 677 KAGGEGVLQSVIMQCLRIACVKAGDITTKIKNAVETYNSARQLRKIKRH 726
           K G EGV QSVI+ CLR+A  +A   T  I++AVE YN  R  +K+KRH
Sbjct: 244 KPGEEGVNQSVILHCLRLASSRASATTKIIRDAVEAYNRERSSQKVKRH 292

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g01690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C8J7	1.3e-139	63.32	Protein TRAUCO OS=Arabidopsis thaliana OX=3702 GN=TRO PE=1 SV=1	[more]
Q9M209	3.6e-139	59.47	Exosome complex component RRP45B OS=Arabidopsis thaliana OX=3702 GN=RRP45B PE=2 ...	[more]
Q9LDM2	4.5e-121	73.36	Exosome complex component RRP45A OS=Arabidopsis thaliana OX=3702 GN=RRP45A PE=2 ...	[more]
Q06265	1.4e-66	45.45	Exosome complex component RRP45 OS=Homo sapiens OX=9606 GN=EXOSC9 PE=1 SV=3	[more]
Q3SWZ4	1.2e-65	45.09	Exosome complex component RRP45 OS=Bos taurus OX=9913 GN=EXOSC9 PE=2 SV=1	[more]

BLAST of Cp4.1LG18g01690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023847.1	3.66e-312	99.77	Protein TRAUCO, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023516889.1	2.62e-311	99.78	exosome complex component RRP45A-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023516888.1	1.05e-307	100.00	protein TRAUCO-like [Cucurbita pepo subsp. pepo]	[more]
KAG6590196.1	1.21e-306	99.53	Protein TRAUCO, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022960791.1	5.65e-305	99.07	protein TRAUCO-like [Cucurbita moschata]	[more]

BLAST of Cp4.1LG18g01690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8K9	2.74e-305	99.07	protein TRAUCO-like OS=Cucurbita moschata OX=3662 GN=LOC111461487 PE=4 SV=1	[more]
A0A6J1JKQ3	3.65e-303	98.84	protein TRAUCO-like OS=Cucurbita maxima OX=3661 GN=LOC111485459 PE=4 SV=1	[more]
A0A6J1HA43	4.09e-301	96.93	exosome complex component RRP45A-like OS=Cucurbita moschata OX=3662 GN=LOC111461...	[more]
A0A6J1JG94	1.15e-299	96.10	exosome complex component RRP45A-like OS=Cucurbita maxima OX=3661 GN=LOC11148544...	[more]
A0A5D3D5T3	1.63e-284	93.02	Protein TRAUCO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00102...	[more]

BLAST of Cp4.1LG18g01690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51450.1	8.9e-141	63.32	TRAUCO	[more]
AT3G60500.1	2.6e-140	59.47	3'-5'-exoribonuclease family protein	[more]
AT3G60500.2	2.6e-140	59.47	3'-5'-exoribonuclease family protein	[more]
AT3G60500.3	2.6e-140	59.47	3'-5'-exoribonuclease family protein	[more]
AT3G12990.1	3.2e-122	73.36	ribonuclease PH45A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003877	SPRY domain	SMART	SM00449	SPRY_3	coord: 231..392 e-value: 8.6E-27 score: 105.0
IPR003877	SPRY domain	PFAM	PF00622	SPRY	coord: 234..311 e-value: 3.5E-9 score: 36.8
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 470..601 e-value: 1.7E-20 score: 73.9
IPR043136	B30.2/SPRY domain superfamily	GENE3D	2.60.120.920		coord: 192..408 e-value: 1.9E-58 score: 199.1
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 438..728 e-value: 3.4E-95 score: 320.7
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 630..695 e-value: 1.9E-11 score: 43.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 826..842
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 816..888
None	No IPR available	PANTHER	PTHR11097:SF26	EXOSOME COMPLEX COMPONENT RRP45A-LIKE	coord: 437..777
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 437..777
None	No IPR available	CDD	cd12872	SPRY_Ash2	coord: 205..392 e-value: 4.77266E-76 score: 242.423
IPR001870	B30.2/SPRY domain	PROSITE	PS50188	B302_SPRY	coord: 174..393 score: 12.979927
IPR033100	Exosome complex component RRP45	CDD	cd11368	RNase_PH_RRP45	coord: 444..703 e-value: 1.59508E-127 score: 382.261
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 443..656
IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	SUPERFAMILY	49899	Concanavalin A-like lectins/glucanases	coord: 193..395
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 626..724

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g01690.1	Cp4.1LG18g01690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0060776	simple leaf morphogenesis
biological_process	GO:0006396	RNA processing
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0034476	U5 snRNA 3'-end processing
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0034473	U1 snRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0080182	histone H3-K4 trimethylation
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0048188	Set1C/COMPASS complex
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0000976	transcription cis-regulatory region binding