Cp4.1LG18g00630 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g00630
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionmajor pollen allergen Ole e 6-like
LocationCp4.1LG18: 1643684 .. 1644185 (-)
RNA-Seq ExpressionCp4.1LG18g00630
SyntenyCp4.1LG18g00630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAATCATCCAAAAAAAATTTATAAAACGTACAAAAAGGTTGAAAATTGCTCGATAAGTCGAGAAAAAATTAAGAATATAATGGCTAAGAAGATGATCGTGGTGTTTTTAGTATGTGTTGTGGTGGTATCCGTACTACAATTCTCCACGGCTGACAATACAGCCGAAATGGAAGAAAATTTCAAGTCGTTTTTCGGTAACTTGGACGGTGTGAAAGAAAAATTCAAGTCGTGTGTTGAAACGTGCAGCAAGGGATGTAATAACCAAGCTTCGTGTCATACCGAGTGTGAGACAAATTGTGGCAAAAAAGAAGTTGCTGGTACATTTTTCGATCTCTTTCAATAGTTTAAAAAATTATTTCCAATAAGTTTGTATTAATTTTATTTTTGTACTTCTTTTGCAGATAAGCTTCACATCAATGTGCCGGCACGTTGATTATTGAGGATAGAATGAATAATTTATTTAAATAACGTTCGTGAGAGGAATTCTTAAACTCTTTTAT

mRNA sequence

AACAATCATCCAAAAAAAATTTATAAAACGTACAAAAAGGTTGAAAATTGCTCGATAAGTCGAGAAAAAATTAAGAATATAATGGCTAAGAAGATGATCGTGGTGTTTTTAGTATGTGTTGTGGTGGTATCCGTACTACAATTCTCCACGGCTGACAATACAGCCGAAATGGAAGAAAATTTCAAGTCGTTTTTCGGTAACTTGGACGGTGTGAAAGAAAAATTCAAGTCGTGTGTTGAAACGTGCAGCAAGGGATGTAATAACCAAGCTTCGTGTCATACCGAGTGTGAGACAAATTGTGGCAAAAAAGAAGTTGCTGATAAGCTTCACATCAATGTGCCGGCACGTTGATTATTGAGGATAGAATGAATAATTTATTTAAATAACGTTCGTGAGAGGAATTCTTAAACTCTTTTAT

Coding sequence (CDS)

ATGGCTAAGAAGATGATCGTGGTGTTTTTAGTATGTGTTGTGGTGGTATCCGTACTACAATTCTCCACGGCTGACAATACAGCCGAAATGGAAGAAAATTTCAAGTCGTTTTTCGGTAACTTGGACGGTGTGAAAGAAAAATTCAAGTCGTGTGTTGAAACGTGCAGCAAGGGATGTAATAACCAAGCTTCGTGTCATACCGAGTGTGAGACAAATTGTGGCAAAAAAGAAGTTGCTGATAAGCTTCACATCAATGTGCCGGCACGTTGA

Protein sequence

MAKKMIVVFLVCVVVVSVLQFSTADNTAEMEENFKSFFGNLDGVKEKFKSCVETCSKGCNNQASCHTECETNCGKKEVADKLHINVPAR
Homology
BLAST of Cp4.1LG18g00630 vs. NCBI nr
Match: KAG6590395.1 (hypothetical protein SDJN03_15818, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156 bits (395), Expect = 1.00e-47
Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 0

Query: 5  MIVVFLVCVVVVSVLQFSTADNTAEMEENFKSFFGNLDGVKEKFKSCVETCSKGCNNQAS 64
          M+VVFLVCVVVVS L+FSTADNTA+ME NFKSFFGNLDGVKEKFKSCVETC++GCNN+AS
Sbjct: 1  MMVVFLVCVVVVSALRFSTADNTADMEANFKSFFGNLDGVKEKFKSCVETCNEGCNNKAS 60

Query: 65 CHTECETNCGKKEVADKLHINVPA 88
          CHTECET+CGKKEVAD+LHINVPA
Sbjct: 61 CHTECETHCGKKEVADELHINVPA 84

BLAST of Cp4.1LG18g00630 vs. NCBI nr
Match: KAG6590401.1 (hypothetical protein SDJN03_15824, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145 bits (367), Expect = 1.57e-43
Identity = 67/77 (87.01%), Postives = 74/77 (96.10%), Query Frame = 0

Query: 12 CVVVVSVLQFSTADNTAEMEENFKSFFGNLDGVKEKFKSCVETCSKGCNNQASCHTECET 71
          CVVVV+VLQFSTADNTAEME  FKSFFGNLD VKEKFKSCVETC++GCNNQASCHTECET
Sbjct: 2  CVVVVNVLQFSTADNTAEMEAKFKSFFGNLDNVKEKFKSCVETCNEGCNNQASCHTECET 61

Query: 72 NCGKKEVADKLHINVPA 88
          +CG+KEV+D+LHINVPA
Sbjct: 62 SCGRKEVSDELHINVPA 78

BLAST of Cp4.1LG18g00630 vs. NCBI nr
Match: KAG6590396.1 (hypothetical protein SDJN03_15819, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115 bits (288), Expect = 2.34e-31
Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 0

Query: 1  MAKKMIVVFLVCVVVVSVLQFSTADNT-AEMEENFKSFFGNLDGVKEKFKSCVETCSKGC 60
          M KKM+ VFL+CV++V++LQFSTAD T AEME   KS F +   VKEK K+C+ETC+KGC
Sbjct: 1  MGKKMMTVFLICVLLVNILQFSTADKTTAEMEAKMKSLFSDFGTVKEKLKTCIETCNKGC 60

Query: 61 NNQASCHTECETNCGKKEVADKLHINVP 87
               CH++CETNCGKKEVADK +I  P
Sbjct: 61 KGNNKCHSDCETNCGKKEVADKFNIKFP 88

BLAST of Cp4.1LG18g00630 vs. NCBI nr
Match: KAG6590397.1 (hypothetical protein SDJN03_15820, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114 bits (286), Expect = 4.72e-31
Identity = 54/88 (61.36%), Postives = 69/88 (78.41%), Query Frame = 0

Query: 1  MAKKMIVVFLVCVVVVSVLQFSTADNT-AEMEENFKSFFGNLDGVKEKFKSCVETCSKGC 60
          MAK+M+ VFL+CV++V+VLQFSTAD T AEME   KSFF +   VKEK K+C+ETC+KGC
Sbjct: 1  MAKRMMAVFLMCVLLVNVLQFSTADKTTAEMEAKMKSFFSDFGTVKEKLKTCIETCNKGC 60

Query: 61 NNQASCHTECETNCGKKEVADKLHINVP 87
               CH++C TNCGKKEVADK ++ +P
Sbjct: 61 KGNNKCHSDCATNCGKKEVADKYNMKMP 88

BLAST of Cp4.1LG18g00630 vs. NCBI nr
Match: KAG6595593.1 (hypothetical protein SDJN03_12146, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103 bits (257), Expect = 1.17e-26
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 0

Query: 1  MAKKMIVVFLVCVVVVSVLQFSTADNTAEMEENFKSFFGNLDGVKEKFKSCVETCSKGCN 60
          MAKKM+ V L+CV+VVS LQFSTAD + EME  FKSFF +   V+ KFKSC  TC K C 
Sbjct: 1  MAKKMMAVVLMCVLVVSALQFSTADKSTEMEAKFKSFFSDFGTVEAKFKSCAATCQKKCT 60

Query: 61 NQASCHTECETNCGKKEVADKLHINVP 87
          N ASC ++C+ +CGKKEV +K  I +P
Sbjct: 61 N-ASCRSKCDADCGKKEVENKFKIKIP 86

BLAST of Cp4.1LG18g00630 vs. ExPASy TrEMBL
Match: A0A5D3BCS2 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00230 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.69e-15
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 1  MAKKMIVVFLVCVVVVSVLQFSTA---DNTAEMEENFKSFFGNLDGVKEKFKSCVETCSK 60
          MAKKMI +FL+C+VVV+ LQF++A   D  A+ E  F +          K+KSC +TC K
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDA----------KYKSCFKTCEK 60

Query: 61 GC----NNQASCHTECETNCGKKEVADKLHINV 86
           C    + Q+ C  +C+ +C +KEVADKLHI +
Sbjct: 61 ECLENGSGQSYCEVKCDEDCNEKEVADKLHIEL 83

BLAST of Cp4.1LG18g00630 vs. ExPASy TrEMBL
Match: A0A1S3C530 (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.69e-15
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 1  MAKKMIVVFLVCVVVVSVLQFSTA---DNTAEMEENFKSFFGNLDGVKEKFKSCVETCSK 60
          MAKKMI +FL+C+VVV+ LQF++A   D  A+ E  F +          K+KSC +TC K
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDA----------KYKSCFKTCEK 60

Query: 61 GC----NNQASCHTECETNCGKKEVADKLHINV 86
           C    + Q+ C  +C+ +C +KEVADKLHI +
Sbjct: 61 ECLENGSGQSYCEVKCDEDCNEKEVADKLHIEL 83

BLAST of Cp4.1LG18g00630 vs. ExPASy TrEMBL
Match: A0A6J1EQ21 (major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.59e-14
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 1  MAKKMIVVFLVCVVVVSVLQFSTADNTAEMEENFKSFFGNLDGVKEKFKSCVETCSKGC- 60
          MAKKMI V LVC+VVV+ LQ S+A  +A+ E  +++ F      + K++ C E C K C 
Sbjct: 1  MAKKMIAVLLVCIVVVAALQVSSATESAK-EAKYEAKF------EAKYRLCYEKCEKECL 60

Query: 61 ---NNQASCHTECETNCGKKEVADKLHINV 86
             N Q+ C  +C+ +CG+KE ADKLHI V
Sbjct: 61 EKGNGQSFCEVKCDEDCGEKEAADKLHIKV 83

BLAST of Cp4.1LG18g00630 vs. ExPASy TrEMBL
Match: A0A0A0KFH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.59e-14
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = 0

Query: 1  MAKKMIVVFLVCVVVVSVLQFSTADNTAEMEENFKSFFGNLDGVKEKFKSCVETCSKGC- 60
          MAKKM+ V L+C+V+++VL+FS   N  E E+ ++S F        ++KSC E+C K C 
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIV-NGEEKEDKYESKFD------ARYKSCYESCEKECL 60

Query: 61 ----NNQASCHTECETNCGKKEVADKLHINV 86
              N Q+ C  +C+ +C +KEVADKLH+ V
Sbjct: 61 TNGKNGQSYCEVKCDEDCDEKEVADKLHVEV 84

BLAST of Cp4.1LG18g00630 vs. ExPASy TrEMBL
Match: A0A0A0K9Z9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.53e-14
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 0

Query: 1  MAKKMIVVFLVCVVVVSVLQFSTADNTAEMEENFKSFFGNLDGVKEKFKSCVETCSKGC- 60
          MAKKM+ VFL+C+VVV+ LQF  A+     E+    +    D    K+KSC ETC K C 
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANE----EDGVTKYEAKFDA---KYKSCYETCEKECL 60

Query: 61 ----NNQASCHTECETNCGKKEVADKLHINV 86
              N ++ C  +C+ +C +KE ADKLHI +
Sbjct: 61 RNDTNGESFCEVKCDEDCSEKEAADKLHIEL 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6590395.11.00e-4788.10hypothetical protein SDJN03_15818, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590401.11.57e-4387.01hypothetical protein SDJN03_15824, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590396.12.34e-3161.36hypothetical protein SDJN03_15819, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590397.14.72e-3161.36hypothetical protein SDJN03_15820, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595593.11.17e-2658.62hypothetical protein SDJN03_12146, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A5D3BCS27.69e-1544.09Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3C5307.69e-1544.09major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 ... [more]
A0A6J1EQ211.59e-1445.56major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354... [more]
A0A0A0KFH61.59e-1442.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102480 PE=4 SV=1[more]
A0A0A0K9Z94.53e-1442.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106720 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036466Pollen allergen ole e 6 superfamilyGENE3D1.10.287.720Pollen allergen ole e 6coord: 45..87
e-value: 4.4E-7
score: 31.3
IPR036466Pollen allergen ole e 6 superfamilySUPERFAMILY111388Pollen allergen ole e 6coord: 46..82
NoneNo IPR availablePANTHERPTHR35632:SF5SUBFAMILY NOT NAMEDcoord: 1..86
IPR015333Pollen allergen ole e 6PANTHERPTHR35632MAJOR POLLEN ALLERGEN OLE E 6-LIKEcoord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g00630.1Cp4.1LG18g00630.1mRNA