Cp4.1LG18g00560 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g00560
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Histone H2A
Location	Cp4.1LG18: 1253179 .. 1254264 (+)
RNA-Seq Expression	Cp4.1LG18g00560
Synteny	Cp4.1LG18g00560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATCGTTCTTGAACTCATTGCGATATAGATTCAAGTCTCTCGAAAACCCCAAATTAGGGTTCTTGATTTTCATCTCTCTTCTCTCCAAATCCATCAATTTTTTACTCCGATTCAACTATGAGTTCCACCAAGGGCGGTAGAGGAAAGCCGCAAGCCACCAAATCCGTTACACGATCGCATAAAGCCGGCCTCCAGTTCCCCGTCGGTAGAATCGCAAGGTTTCTCAAGGCCGGAAAGTACGCCGAGCGTGTCGGCGCTGGCGCTCCAGTATATTTGTCGGCCGTTCTCGAGTATCTTGCCGCCGAGGTAACAAGATCCGTTGTCTTTGTTCCTTTTTTCAGCGATTTTGATGCGGTTCTGTTCTTATCTCTGTTTCTGATAATTTTAAATCGGAATTAGGTTTTGGAGCTTGCTGGAAATGCTGCTAGAGACAACAAGAAGAATCGTATTGTGCCGAGGCACATCCAACTTGCTGTGAGGAACGATGAGGAGTTGAGTAAGCTTTTAGGATCTGTAACCATTGCTAATGGAGGTGTTTTGCCCAATATTCACCAAACTCTTTTGCCTAAAAAGGTCGGCAAAGATAAGGGTGATATCGGTTCTGCATCACAGGAATTTTAGGGCTTATAGGATTTTCAGTGCTTGCTTGTATTGCATTTGTTGTGTTCTCTGCGTTGTATCATCTTGATTTTGTTTAGATGCATACGTTTTTACATCTATGCAAGGCTGTTTGTTGTTTGAACATCTTTGCAACAAAATTAACAAAATTTTGGTCTACATTTACACAAATTTGCACTTAGAAAGCTGGTTCATCTCTTTGATCTCTGCATTTTGAGTTTGGCTTCATAATCATATGAATTATTTTTCCAGTTTATGTTGGAATCGTGAATTTTGATGAGTTTGGCTTCACAACCATATGAATTATTTGTCCAGTTTATGTTGGAATCGTGAATTTTGATTTTGTTTCTTTGATTAATTTAGTTTGTTATCTAGTTTGAATTGTGGAGATTTGAAGTTCAAGGTTACATATATTTTTTTTCTTATATTGAGTTGGAATCATTTGGGCTAGAATTTTGTGACGATGA

mRNA sequence

CAATCGTTCTTGAACTCATTGCGATATAGATTCAAGTCTCTCGAAAACCCCAAATTAGGGTTCTTGATTTTCATCTCTCTTCTCTCCAAATCCATCAATTTTTTACTCCGATTCAACTATGAGTTCCACCAAGGGCGGTAGAGGAAAGCCGCAAGCCACCAAATCCGTTACACGATCGCATAAAGCCGGCCTCCAGTTCCCCGTCGGTAGAATCGCAAGGTTTCTCAAGGCCGGAAAGTACGCCGAGCGTGTCGGCGCTGGCGCTCCAGTATATTTGTCGGCCGTTCTCGAGTATCTTGCCGCCGAGGTTTTGGAGCTTGCTGGAAATGCTGCTAGAGACAACAAGAAGAATCGTATTGTGCCGAGGCACATCCAACTTGCTGTGAGGAACGATGAGGAGTTGAGTAAGCTTTTAGGATCTGTAACCATTGCTAATGGAGGTGTTTTGCCCAATATTCACCAAACTCTTTTGCCTAAAAAGGTCGGCAAAGATAAGGGTGATATCGGTTCTGCATCACAGGAATTTTAGGGCTTATAGGATTTTCAGTGCTTGCTTGTATTGCATTTGTTGTGTTCTCTGCGTTGTATCATCTTGATTTTGTTTAGATGCATACGTTTTTACATCTATGCAAGGCTGTTTGTTGTTTGAACATCTTTGCAACAAAATTAACAAAATTTTGGTCTACATTTACACAAATTTGCACTTAGAAAGCTGGTTCATCTCTTTGATCTCTGCATTTTGAGTTTGGCTTCATAATCATATGAATTATTTTTCCAGTTTATGTTGGAATCGTGAATTTTGATGAGTTTGGCTTCACAACCATATGAATTATTTGTCCAGTTTATGTTGGAATCGTGAATTTTGATTTTGTTTCTTTGATTAATTTAGTTTGTTATCTAGTTTGAATTGTGGAGATTTGAAGTTCAAGGTTACATATATTTTTTTTCTTATATTGAGTTGGAATCATTTGGGCTAGAATTTTGTGACGATGA

Coding sequence (CDS)

ATGAGTTCCACCAAGGGCGGTAGAGGAAAGCCGCAAGCCACCAAATCCGTTACACGATCGCATAAAGCCGGCCTCCAGTTCCCCGTCGGTAGAATCGCAAGGTTTCTCAAGGCCGGAAAGTACGCCGAGCGTGTCGGCGCTGGCGCTCCAGTATATTTGTCGGCCGTTCTCGAGTATCTTGCCGCCGAGGTTTTGGAGCTTGCTGGAAATGCTGCTAGAGACAACAAGAAGAATCGTATTGTGCCGAGGCACATCCAACTTGCTGTGAGGAACGATGAGGAGTTGAGTAAGCTTTTAGGATCTGTAACCATTGCTAATGGAGGTGTTTTGCCCAATATTCACCAAACTCTTTTGCCTAAAAAGGTCGGCAAAGATAAGGGTGATATCGGTTCTGCATCACAGGAATTTTAG

Protein sequence

MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

Homology

[Close]

BLAST of Cp4.1LG18g00560 vs. ExPASy Swiss-Prot
Match: Q9S9K7 (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.2e-64
Identity = 127/134 (94.78%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKP+ATKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of Cp4.1LG18g00560 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.0e-64
Identity = 126/134 (94.03%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKP+ATKSV+RS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of Cp4.1LG18g00560 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.0e-64
Identity = 126/135 (93.33%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 2   SSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           ++TKGGRGKP+A+KSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 5   ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 64

Query: 62  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 121
           AEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK
Sbjct: 65  AEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 124

Query: 122 VGKDKGDIGSASQEF 137
           VGK KG+IGSASQEF
Sbjct: 125 VGKGKGEIGSASQEF 139

[Close]

BLAST of Cp4.1LG18g00560 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-62
Identity = 123/135 (91.11%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 2   SSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           S  KGGRGK ++TKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLA
Sbjct: 4   SGAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLA 63

Query: 62  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 121
           AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLPKK
Sbjct: 64  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKK 123

Query: 122 VGKDKGDIGSASQEF 137
            GKDKG+IGSASQEF
Sbjct: 124 SGKDKGEIGSASQEF 138

[Close]

BLAST of Cp4.1LG18g00560 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 7.5e-60
Identity = 119/131 (90.84%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 6   GGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 65
           GGRGK + +KSV+RS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 66  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKD 125
           ELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNIHQTLLPKK GKD
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKD 127

Query: 126 KGDIGSASQEF 137
           K DIGSASQEF
Sbjct: 128 KADIGSASQEF 138

[Close]

BLAST of Cp4.1LG18g00560 vs. NCBI nr
Match: XP_022961601.1 (probable histone H2AXb [Cucurbita moschata] >XP_023515960.1 probable histone H2AXb [Cucurbita pepo subsp. pepo] >KAG6590420.1 putative histone H2AXb, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590422.1 putative histone H2AXb, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023969.1 putative histone H2AXb, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262 bits (670), Expect = 4.00e-88
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 136
           KVGKDKGDIGSASQEF
Sbjct: 121 KVGKDKGDIGSASQEF 136

[Close]

BLAST of Cp4.1LG18g00560 vs. NCBI nr
Match: XP_022968814.1 (probable histone H2AXb [Cucurbita maxima])

HSP 1 Score: 259 bits (661), Expect = 9.42e-87
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 136
           KVGKDK DIGSASQEF
Sbjct: 121 KVGKDKVDIGSASQEF 136

[Close]

BLAST of Cp4.1LG18g00560 vs. NCBI nr
Match: XP_022933937.1 (probable histone H2AXb [Cucurbita moschata] >XP_022971521.1 probable histone H2AXb [Cucurbita maxima] >XP_023530290.1 probable histone H2AXb [Cucurbita pepo subsp. pepo] >KAG7037529.1 putative histone H2AXb [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259 bits (661), Expect = 9.42e-87
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKP+ATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 136
           KVGKDKGDIGSASQEF
Sbjct: 121 KVGKDKGDIGSASQEF 136

[Close]

BLAST of Cp4.1LG18g00560 vs. NCBI nr
Match: XP_038878621.1 (histone H2AX [Benincasa hispida])

HSP 1 Score: 257 bits (656), Expect = 6.24e-86
Identity = 133/135 (98.52%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 2   SSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           SSTKGGRGKP+ATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 6   SSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 65

Query: 62  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 121
           AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK
Sbjct: 66  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 125

Query: 122 VGKDKGDIGSASQEF 136
           VGKDKGDIGSASQEF
Sbjct: 126 VGKDKGDIGSASQEF 140

[Close]

BLAST of Cp4.1LG18g00560 vs. NCBI nr
Match: XP_022154594.1 (probable histone H2AXb [Momordica charantia])

HSP 1 Score: 256 bits (653), Expect = 1.79e-85
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKP+ATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV
Sbjct: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126

Query: 123 GKDKGDIGSASQEF 136
           GKDKGDIGSASQEF
Sbjct: 127 GKDKGDIGSASQEF 140

[Close]

BLAST of Cp4.1LG18g00560 vs. ExPASy TrEMBL
Match: A0A6J1HAT5 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111462131 PE=3 SV=1)

HSP 1 Score: 262 bits (670), Expect = 1.93e-88
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 136
           KVGKDKGDIGSASQEF
Sbjct: 121 KVGKDKGDIGSASQEF 136

[Close]

BLAST of Cp4.1LG18g00560 vs. ExPASy TrEMBL
Match: A0A6J1I3J2 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111470214 PE=3 SV=1)

HSP 1 Score: 259 bits (661), Expect = 4.56e-87
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKP+ATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 136
           KVGKDKGDIGSASQEF
Sbjct: 121 KVGKDKGDIGSASQEF 136

[Close]

BLAST of Cp4.1LG18g00560 vs. ExPASy TrEMBL
Match: A0A6J1I0R4 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111467937 PE=3 SV=1)

HSP 1 Score: 259 bits (661), Expect = 4.56e-87
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 136
           KVGKDK DIGSASQEF
Sbjct: 121 KVGKDKVDIGSASQEF 136

[Close]

BLAST of Cp4.1LG18g00560 vs. ExPASy TrEMBL
Match: A0A6J1F184 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111441201 PE=3 SV=1)

HSP 1 Score: 259 bits (661), Expect = 4.56e-87
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKP+ATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 136
           KVGKDKGDIGSASQEF
Sbjct: 121 KVGKDKGDIGSASQEF 136

[Close]

BLAST of Cp4.1LG18g00560 vs. ExPASy TrEMBL
Match: A0A0A0LW51 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 256 bits (653), Expect = 8.66e-86
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKP+ATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV
Sbjct: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126

Query: 123 GKDKGDIGSASQEF 136
           GKDKGDIGSASQEF
Sbjct: 127 GKDKGDIGSASQEF 140

[Close]

BLAST of Cp4.1LG18g00560 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-65
Identity = 127/134 (94.78%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKP+ATKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of Cp4.1LG18g00560 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 245.0 bits (624), Expect = 3.6e-65
Identity = 126/134 (94.03%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKP+ATKSV+RS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of Cp4.1LG18g00560 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 198.0 bits (502), Expect = 5.0e-51
Identity = 105/124 (84.68%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 7   GRGKP----QATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A KS +RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Cp4.1LG18g00560 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 198.0 bits (502), Expect = 5.0e-51
Identity = 105/124 (84.68%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 7   GRGKP----QATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A KS +RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Cp4.1LG18g00560 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 196.4 bits (498), Expect = 1.4e-50
Identity = 104/124 (83.87%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 7   GRGKP----QATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A K+ TRS KAGLQFPVGRIARFLK GKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g00560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9K7	2.2e-64	94.78	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
O04848	5.0e-64	94.03	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
O65759	5.0e-64	93.33	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
P35063	2.1e-62	91.11	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
A2ZL69	7.5e-60	90.84	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]

BLAST of Cp4.1LG18g00560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961601.1	4.00e-88	100.00	probable histone H2AXb [Cucurbita moschata] >XP_023515960.1 probable histone H2A...	[more]
XP_022968814.1	9.42e-87	99.26	probable histone H2AXb [Cucurbita maxima]	[more]
XP_022933937.1	9.42e-87	98.53	probable histone H2AXb [Cucurbita moschata] >XP_022971521.1 probable histone H2A...	[more]
XP_038878621.1	6.24e-86	98.52	histone H2AX [Benincasa hispida]	[more]
XP_022154594.1	1.79e-85	98.51	probable histone H2AXb [Momordica charantia]	[more]

BLAST of Cp4.1LG18g00560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAT5	1.93e-88	100.00	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111462131 PE=3 SV=1	[more]
A0A6J1I3J2	4.56e-87	98.53	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111470214 PE=3 SV=1	[more]
A0A6J1I0R4	4.56e-87	99.26	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111467937 PE=3 SV=1	[more]
A0A6J1F184	4.56e-87	98.53	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111441201 PE=3 SV=1	[more]
A0A0A0LW51	8.66e-86	98.51	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1	[more]

BLAST of Cp4.1LG18g00560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54690.1	1.6e-65	94.78	gamma histone variant H2AX	[more]
AT1G08880.1	3.6e-65	94.03	Histone superfamily protein	[more]
AT4G27230.1	5.0e-51	84.68	histone H2A 2	[more]
AT4G27230.2	5.0e-51	84.68	histone H2A 2	[more]
AT1G51060.1	1.4e-50	83.87	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 44..59 score: 84.58 coord: 15..37 score: 68.12 coord: 73..87 score: 75.49 coord: 101..119 score: 70.23 coord: 59..72 score: 89.46
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 4..124 e-value: 8.8E-76 score: 267.7
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 5..121 e-value: 2.38276E-67 score: 197.558
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..129 e-value: 1.5E-62 score: 211.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 18..121
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 13..90 e-value: 5.3E-14 score: 52.7
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 93..126 e-value: 2.5E-18 score: 65.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR23430:SF322	HISTONE H2A	coord: 2..134
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..134
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 23..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g00560.1	Cp4.1LG18g00560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity