Cp4.1LG18g00410 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g00410
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L18, putative
Location	Cp4.1LG18: 920799 .. 932441 (-)
RNA-Seq Expression	Cp4.1LG18g00410
Synteny	Cp4.1LG18g00410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGCCGGTAAATCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGTGTGCTCCGAGCAATTGTCTCCCATCGTTCTGGAGTCCTCTTCAAATTCAATCTAACAATCTGTATTTTCTGAAATTTTTATTAGGATTCTCTTCAAATAACTCTGCGGCATCATGTTCAAAAAGTGAGTTCTCTCTATATTGCTCGTTATTCGGCTATGATTTCATGTCTTTGCTTGATGATTGTGGAAAATGATATCTAGGTTTTGTTTTTCGGGGATTAAAATATGAGGAAATGCTTTGATTTCTTCACTTTTTGTTACTGTTCTCTGGATTTTGCACGATTAGTGTCTTTTCTCTCGTTCTGCTCTGTCGGTTTGTTTGTAGGGTTGATTCTTCTCATAGGAAAAGAGGATTGTTTTGCTTCTGTTTTTCGATTGATTGTTTTGCCCTAGATTTCTACTTGCCGAGAGTTGCTATCGTTGTCGTAATGTGTCATAATGTGCGGAAATAATCATTTGAAACTTCGATATAAGACATAAACTTCATCTTAAAATAATATCATGAGCTTACTTGTTCGAAAACATCGTTAAAACGACACAACGAAACACTAAATGAATTAAATAAACATTAGAATTAGAAAAATAAACATTAGAATTAGAAACATCATATCCTAATCTAAGTCTAAGAAAATAAATGCAACTGTGTCATGGTTTCAAGTTGCGATGTTGTCGTCAGCCGTTGAGGCCTTGCCTTTACCTGAAAAAAGGATTGTTTTGCTTCTATTTTTTCGTTTGATTCTTTTGGACAGCTGTGGATAAATCATTGTTGCTGAATTTGAACATTGAATTGAAATGATAGTTTTGGAGTTGGGATGTTTTCTTGTGGAGTTGAGTGAGTGTGTTGTTTGTACAAATCTTTCAATTGTGTTCTTTTTGCTGTCTTATTGTAGGTTTTCTACTGAGGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAAGTAAGTACTGGTTTAACCGTTCGAATCTCGGAATCATATTCATTAGATAAGAACTGATATCTATCTATTGATTTAACCATTCGAATCTCGGAATCATATTCATTAGATAGCAATTGATATCTATGTATTGGTTTAACAGTTCGAATCTCTGAATCATATTCATTAGATAGCAACTGATATCTATCTGTTTTTTGTCTTTTGATTGCAGTATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTGTAACTAAGTGGTTCGAACTTCTGTTTGCTTCTATTTTTGCAGAAAATGATGGATGTTCTTTGTTTTTCTTCGTTCATTTGATCATATGAGGCTTATGTTGGATTTTTGTTTTGAATTATAGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATGTAATGTTCTTCTGATAACCCTTTTAACTTCTGTTGCAATACATATCATTTTTGTAGATCTTTGTTCTTAAACATGTAAGCCCATTGCATTGTTTTATGAAGATGTTTGAAATGAATATTTCCGCACAAGATGTTATGTCGTGCATGTAGTAGTGACTTTAGGTTAGTAGAAAACTAGGGTCGTTACAATATTCTTCTGACAACCCTTGTAACTTTTGTTGCAATACATATCGTAGGTGTTGAGGATTGTTGGGAGGGAGTCCCACATTGACTAATTAAGAGGACAATCCTTGGTTTGTAAGTAAGGAATACATCTCCATTGGTAGGAGGCCGTTTGGGGAAACCAAAAGCAAAACCATGAGAGTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGTTTGTGGTTCTTAACATGGTATCAGAGTCATGCCTTTTACTTAGTCATGTCAATAGAATCCTAAAATGTCGAACAAAGAAGTTGTGAGCCTCGAATGTGTAGTCAAAAAGTGACTCGAGTGTCGAACAAAGGTGTACTTTGTTCGATGACTCCAGAGAAAGGAGTCGAGCCTCAATTAAGGGGAGGTTGTTCGAGGGCTCTATAGACCTCAAGGGAGGTTCTACGGTGTACTTTGTTTGAGGGGAGGATTGTTGAGGATGGTTGGGAGGGAGTCCCACATTGGCTAATTAAGAGGACGATATGCGTTTATAAGTAAGGAATACATCTCCATTGGTATGAAGCCTTTTGGGGAAACCATAAGCAAAACCATTTGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGTCCGTGGTTCTTAACATGGTATCATAGCCATGCCCTTTACTTGGTCATGTCTATAGAATTCTCAAATGTCTAACAGAGAAGTTGTGAGCCTTGAATGTGTAGTCAAAAAGTGACTCAAGTGTCGAACAAAGGGTGTGGTGTACTTTTCGAGGGCTCCAAAGAAAGGAGTCGAGCCTCAATTAAGGGGAGGCTGTTCGAGGGCTCTATAGGCCTCAAGCGAGGCTCTATAGTGTACTTTGTTCAAGGGGAGGATTGTTGGGAGGGAGTCCAACATCGGCTAATTAAGAGGACGATCGTGGGTTTATAAGTAAGGAATACATCTTCATTGGTATGAGGCCTTTTGGGGAAACCAAAAGACAAACCATGAGAGCTTATGTGAGATTATTTATGTCCAGATTAGAAGTAGCTTACGATTATATAGGCACAAAATATGTGAGATCCCGCATTAGTTGGAGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGTGTTTTAAAAACCTTGTGGGGAAGCTTGAAAGGGAAAGTCCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGGGCTGTTACAGAATACTTAGATCTCGGTTTGGAAAGGAAATTGGGAATGGGGAAATGGTTCATCTGGTTGTTTATAACTAATTTTTCCATTTCCTACTTGTGGCTTCCCAATGAGCTCATCAAAAGCTCTACTGTAGAATGCTGAGTAAAGCACTTTGTGGTATATTTGCGCTGAAAGGGATTGGAGACGCTTTGGAAACATACCAAGAGAGTTTAATCTTATTCCGTAACAGCCCAAGCCCACCGCTAACAAATATTTTCATCTTTGGGCTTTCCCATTCAGGCTTCCCCTCAAGGTTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGGAATGTTTTGTTCCCCTCTCCAATCGATGTGAGATCTCACAATTCACCCCCCCTTGAGGGTTCAACGTCCTCGCTAGCACATCGCCCGGTGTCTAGCTTTGATATCATTTGTAACAGCCCAACCTCATCACTAGCAAATATTGTTCTCTANAATACATCTTCATTGGTATGAGGCCTTTTGGGGAAACCAAAAGACAAACCATGAGAGCTTATGTGAGATTATTTATGTCCAGATTAGAAGTAGCTTACGATTATATAGGCACAAAATATGTGAGATCCCGCATTAGTTGGAGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGTGTTTTAAAAACCTTGTGGGGAAGCTTGAAAGGGAAAGTCCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGGGCTGTTACAGAATACTTAGATCTCGGTTTGGAAAGGAAATTGGGAATGGGGAAATGGTTCATCTGGTTGTTTATAACTAATTTTTCCATTTCCTACTTGTGGCTTCCCAATGAGCTCATCAAAAGCTCTACTGTAGAATGCTGAGTAAAGCACTTTGTGGTATATTTGCGCTGAAAGGGATTGGAGACGCTTTGGAAACATACCAAGAGAGTTTAATCTTATTCCGTAACAGCCCAAGCCCACCGCTAACAAATATTTTCATCTTTGGGCTTTCCCATTCAGGCTTCCCCTCAAGGTTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGGAATGTTTTGTTCCCCTCTCCAATCGATGTGAGATCTCACAATTCACCCCCCCTTGAGGGTTCAACGTCCTCGCTAGCACATCGCCCGGTGTCTAGCTTTGATATCATTTGTAACAGCCCAACCTCATCACTAGCAAATATTGTTCTCTATGGGTTTTCCCTTTCGGGCTTCTCCTCAAGGTTTTTAAAACGTGTTTGATAGGGAGAAGTTTCCACACCCTTATAAAGAATGTTTTGTTCTCTTCTCCAACCGATGTGATACTCTCGTTTTCATATGAGAGCTCCTTAGATAAGTTGTGTAATTTTTCATTTGGAAGGTATTTTGACCTCTCTTGGTCACAGTTTGGAGATACTTAATGATACTCTAGCCGTGTAAAGGATATTTAGCTAACTTTCTAATTTCTTTGAAATTTACTAATGATGGGTCGGCAAGAAAATGGGAACAACCTTCTTTATTAGTTTAAAGAACGGACTTTGGAGTTGGTCTCAGTGGACGAATTCCAATCGCATCTCCTATCACAACTAGCCAATCTGAGGAAAGAGGGTTTACAACCAACTTTCCATTTAAACATAGTTGTTACACACCCCGTGGGCACCCCACACAACGCCCTAGTACGCACCCATGCTCTAGTATTAGTGGGTTCCGCGGGATGCGTGTTTTATGAAGGACATCTTTGCTTTAACTCCTAATAGGAGAGTGCTTTATCGAGTGGGAGGGCGGGTGGGCTAGTACGAGGTAATTTTTTATTGATTAAGGAACTAAGTGTTGAGAAGGATAGACATAAAGATGTTCTTATTCATGCACGATTTTTCCGAAGTCTCACCTTGTCACCTCATCTCCCCTCGATGAGAGGTTTAGTGTTCACATATCCAACCATAGACTTTTAGAACTAAAGTTTCCATGATTACTCCATAGCCACCTTCCTTCAAACCATACTACTAAAGATAACAAGTACTATAGCATTAGGCCTCCAATCGTGAATACGTACATCAGTAGGGGTACTAAGGGAATTAATTGGAGGACGAAAGGATAATGGTACGTAAAGTTAGTTCGGAGTACGATAGTATGCTTTTGGATTATATTTGGAAGTGTTCATTTTTCTTTTATCTTTATCGTTGGGTAGAACAATAGTGTTCTTGGATAGGGAGAGTAACCAACACCCTCGAATCGATTGGAAGGTTTGCTTCTTTTCTGTATCGTAATCGTTGATTTGTTGTGGTTGTCGCTCTGTTCTTATTGATTTTAGTACAAAAGTTAAAATCTAAGAAGCTCTAAGGAACCCAAGGATGTTCAAAAACCAAAGGTAAAGAGTAATGATGGTCAAAAGACGCATACAATGACATTAGCTGAAAGGACACCGTTCAGTTGTAGGGATCAACTCTACAAGAGACTACCAGATACTGAACTACAAGCGAGGAAAGAAAAAGGGTTGTGTTATTGTTGTGATGAGAAACACTCGATTAGCTTCGGTTAAAAAAAAAAAAAAAGCTCCGACTTCTGGTAACAACAAACGAGATAGAAGATGAAATGGAAGATGTGCATGAGGAGACTTAGATGTTAGAAGTGAGTTCGGCGGTGGAGTTATCGCCAAACTCGGTGGTTGGTCTATCCACACCATGAAACTAAAAGGGTTTATCGAGGATCACGACGTTATAATATTGATAGATTGTGGAGCAACACACGAGTTGGAAAGTTGCCTTCGACGTAATCTACTAGCTACGGTGTTGTTATGGGAACTTGGGAAGCGGTGAAAGGGAAGGGACTCTGTTGAGGAGTTCTCGAGCCTTGTCACTGGAGTTGAGAATCATGGTGAATGTGGATTTGTTTCGTTATCCTCGTGCTCAAAAGCCCGAGATCGAATGCTTGATAGATGAAATGTTAGCTGGTGGAATTATTAGGCCCAATATTAGCCTGGTTTCGAGTCAAGTACAAGGATGATAGTTGAACACGAGTTATAACCAGATAGGAATGGACAAGGAGTCCATTGCTAAGACCGTTTTTCGAACTCATGAAGGCCATTACGAAGTTTTGGTCATGTCATTCGGCCTTACAAATGCCCTTATGAATCAACATTACGACCTCTCCTTCGACCGTTTGTTCTCGTCTTTTTTTATGACATTCTTGTTTATAGTACTGATTTGTTCTCGTCATTATCATTATCCATTCCTCAGTTCCAGATTATGACTTGTACCATTCTATTTGGTTTGCAGATCCTAACATTATGAAAAAATTACAAGTAGACAGAGGTGCCATAAAGTTTGTCCTTGCTGGTGCTAACATAATGTGTCCTGGTCTTACGTCCCCTGGCGGTGCCTTGGACGATGAAGTCGAAGCCGATACACCTGTGGTAAAATATCCGCTCTTATCTATCGACTCGAAATCTCCGTTGTTTATTCCGTTTGTGATTGTTAGTAGGTTTCTTATATAGAATCAAACATTTTTTTTCAGGCAATAATGGCAGAAGGGAAGCAACATGCTCTTGCTATTGGCTTCACAAAGATGTCAGCCAAGCAAATGTGAGTAAACTTGTCAAATAACTGTAACGGGCTTAGATATTGTCCTCTTTAGGCTTTCCCTTAAGATTTTTAAAACGCGTCAGTTAGGGAGAGGTTTCCACGTCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTAGAAACCTCTCCCTAACAGACGCGTTTTAAAAGCCTAAAGAGAACAACATTTGGTAGCGGTGGACTTGGATTGTTACCATAACGGTGACGTGGTGTGGATAAAACTTAAGAAAACTCCTCGTTTGTAATTTACAGAAGGGCGACGAACAAAGGGATTGGCGTGGACAATATGCATTACCTTAACGACGGTCTTTGGAAGGTATATATTAGTTCCCTTCCCTCCCATGTTTCTTCATGCTGCCTAGTGTTGATGTTGAATGTCGAAGCTATATCTTATTTCGGTTGCAGATGGAACGACTCGATTGAGGGTATCTTAAAGAAACAACGTTGGGGGACGGGTGGGGGCGACACGACTTAGAGAACGAACTTTGTTTAATTTCTTCATTCTCTGCACTTTTGAGTTACAAGTCTTAACAGCCTGTTTTGTCTCCATATTTTTAGTATCAGAATTGTACTTAAAATCCCTTTGCATTATTATGTGAATCTGCTCTCCTTGCACTTCTTCACAACATCATTTGGGTTTCTGCTTAATTCTTGAGCGCCTTTATTATTGGTTAAGCTATGCTCAAATTAACGATCTCCACGGGTTGGAGATGGGGAAGGGTTTTCCGTCCCTATTCCTGTCACCTATTTCATGTTTTTTTGGGATGATACCACTTGTCACGATCGCACTTTGATGGTAGCGGACTTGCGATTGTGTGGCACTCACTTTCCAACAACAAGTGAGTTAAGTTTATTCGTTCTTACTTTGTTTACGGCCAAGCGACGTATGCTCGAGCCTCTGGCTTCGGTTCAAGAAGAAAGTTTTAGAAAATGGGGGCAGGGAGATTTTGAAAGAGTTTAAAGCAAGATGTGAGAAAATTGAAATTGGTGTTATATGGGAATGTAAGCAAAAGGCAACAACAACGGCTTACTGCATATAACTATCGGGTAGGGAGATGGGATACATATAATTATTGGGTAGGGAGAAGATCCCATATAATTATCGGGTAGGGAGAAGGGATAATTTTTTCTCGTTTATTAGATAGGGGGATGGGATAATTTTTTCTCGTTTATTAGATAGGGAGATGGGATAATTTTTCCTCGTTTATCGGATAAGGAGATGGGATAATTTTTTTTCGTTTGAGATGGGGAGATTGGATAACTTTTTTTCGTTCGGATAGGGAGATGGGATAATTTTTTTCTCGTTTATCGGGTAGGGAGACGTGATAATTTTTTCTCGTTTATTATTTTTTAAAAGAATAATTATTTTAAAATTTTCATTTTTCAATATAATTTTTATTAAAAATTGTAAAAATAAATTAATATATATTATATATATATATAAAATGATCCGATAATTTCTAAAAAAATCAAAATTTAATATTACAACATAATTCTTTAAAATTTTAAAATATATATTATAGTCTTAAAATTAATAGATTTATTTTTTTAATATAGCAAAAAAAAAAAACATAAATATTAAAAAAAACATAAATAAATAAATAAATAAATATATATATATATATATATATATATATATATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATATATATATATTAAATGGAGTGGAGATGGAGAATTGAGCGGGGATGGGGAGTATAATCTCATCTCCGACTCCATTTATCTATCGAAAAAAAAAACGTTCTCCACTTCCTCTCCATTAACCCCATTTACCTAATGAAAAAGAATATTCTCCATTTCTTTCCTATTTTCTGTCTAAACGGGAAATTCATCGAACGGAGAATTCACCTGCACCCATTTATCAAGAGTCGTTAACTGCCATGCGGATAAAAAATGTCATAAAAAAGGTTGAGTATATCAAAATATTCAATAAGTAACTCCACTGTCGGAGTTGCAAAAAGCAACCACGTGCGATATGAGTCATAACATACATTCCTAATGAGACTTCAAGGACAGGCCTCGACTCCAATTCTTTTCTACACTTGTTATGCAAGCATCACCTCCGCACGTATAAAACCCACCAAGCTCATACTACTTTCACGCTCCCGAGGCCTCATCGAGTACACAATATGTTCATATGTAAGAGGTATCAATTTCATACACACCGACTCTACATTAGATACTTCAACAATAGGTAGAAACCCTAATATATATAAAAAAATTAAAAAATTAAAAAATTAATTATGAATTATTTATTTATTTATTTATTTTCTTTTTATGGCTAATTTTAAAACGGGCCGTCTTCCTGGCCCGGTCCAGCCCACCATGGACAAGGGGCGATCCAGCACTATAAAAGGAATTTAAAACCCTAGTTTTCACCTTCGTCTTCCTTCAGCACCGGCAGCAGAACGCAGCTCGCAAACTCAGAGAGCTACAATGGTAGCCTCTAAATCTCTTTACTTAATCACTGCCTTCTCTGTTTGAATTTCCACCTTTAATGGCTGATTTGTATTTCTTGTTTGGATTTTACTTGATGCTGTGATTAGGGGATCGATCTCGTCGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCGCCCAAATCTGATGATATCTATCTCAAGTTACTCGTCAAGGTACTTGTTAATTGATATTTCTCGTTCATATGCACTTTTATTTGATCTATTGATTCTTAAATATGCTTGATTGTTGAGTCGCTTAATTGTGTTTTGTTGGATTGTCTTTGAGATGCTTCCATTTAAAATTAACTGAAATGTCAGTCGGTTGGATTTTTGGTTTCTGTAAACGGAGTTTTCCCTCATTATTTGATTCATCTTCTAAGTTTAATTTCGGTCTGTCTGCGTTGCGGTTGTCAAATCCGTTTTAAATTGCTAGCAGTTTATAAATGCCTAATTTTTGTTTTTTTATTTCTATCGAACGAATTGGTTTCGATGACTGATCTATCTGCTTTGATGATATTTGTGAATCCCAGCTCATGATGAGATCTTTTGTAGGTCGGGGAATAGTCTTTTACCCATAATATCTGAGCCTTACGTCCAGTATTAGTGTCATTTTTTATTGAAGTGAATTATTGAAACTTTTTTGGGATTAGGAAATACCCAAACGTAAGTGCACTCTTTTACTGCATTTGCTTTTTTGTTAATACTTTTTTAATACCTAAAATGCTATGTTACCTCTATTACTTGCCCTTTTTGGGTACTGAATATCGACATACCTCGATTTGCATGAGCTATACTTCTTGGATTTTGTTTGATTTTGTTGGAAAAGAATAAAATGTTCCCAGTGATGATTAACTTGACCATGCTAATGCTGATCACTTTGTGATTAATCTTTACTTTAATTGTTCTGAGGGAACTGGCTCCAATATTTCTATATTTTGAGCTCGTTTGCATATCTTGCTCTTAAGTGAGATGGATGGGCATCGTTTTTTATGGTGATTCTGTCGTGGGAGAGGGGAGGGTACTTAATTTACCTTCCATGTATTTTATGCATACTTTTGTTGTTTGTTATTTTACAAAATAAGTACTTGCATGAAGTGTAGTACGTTTTTCTACTTGTGTGTTTTCCTGCAAATACACACATTTCACCTGGCCTGCATTCACTAAACAAATTATTTCTCCTATTTCTTATCAGCTTTACCGCTTCCTTGTTCGTCGGACTGGAAGCAAGTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAGGGTTAACAAACCTCCACTTTCACTCTCTAGGCTTATCCAGTTCACGAAAGGAAAGGTTGGTTAATCCTGTAGTTTTCTAATTTTATTTCGGTTGTTTTGTAGTGTTTTGCATATTTGAGATATCTGAAACTCTGCACATTTCCTTGTGATGTAATAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATATTCGTGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGCTTGACATTCGACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTATGGCACTTTTCATTGATACTTCTGTTAACACTGTTTTTGAATGTGCCGAATCGACTTTTTTTGCGTTCCAAGTAATTTAGTCCATTTGCATTTTAAACTTGGTGCTACACTTTGGGATTAATATATTGTACTGTTTATCCATATATCATGTCTTGTAGACTGTAGATCAAAAAGCTAAAGAGTTTCCAGCAATGGTTTAGTAGTTCTGTAGGGGTTTGAATCATCTCTTGGCTACATTTTTATTCTTTTGCTCTATCTGCAGGTTCTTCTTAGAGGTTCTAAGAACTCCCGGGAGGCTGTGAAGCATTTTGGTCCCGCGCCTGGTGTACCGCACAGCCATAGCAAACCGTATGTGAGGTCGAAGGGTAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGATACAGGGTTTGATTTGATCTTACGTTGTTTTCAAGCTAATTCAATGCCTATTGTGTGTTATTTTGAACTCAAAATGCAAATTTTGGTAGATTTTAGTTACCTATCAGTTGTTCCATCTCTGCTTACGATTCTGCCATAATACTGTTGATTACGAATCGATCGAATGCTATTCAGCGGGACTTTATAGTCCTTTTGTTAGATTGTGTGATGGCCATTTTGTGTCCGGTTCGTGTTAGATATCTATCTAGAATCCATTTGATTTGATGATGTTCATAAAAACTTGGATCATATTGCATGTCCTGGAAGTTTGTGGATTGATTAGCGATTATTGCAAGTGTAACACTCCTTGGATGTTGTTTGATATGAA

mRNA sequence

TCCGCCGGTAAATCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGATTCTCTTCAAATAACTCTGCGGCATCATGTTCAAAAAGTTTTCTACTGAGGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTGTAACTAAGTGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATATCCTAACATTATGAAAAAATTACAAGTAGACAGAGGTGCCATAAAGTTTGTCCTTGCTGGTGCTAACATAATGTGTCCTGGTCTTACGTCCCCTGGCGGTGCCTTGGACGATGAAGTCGAAGCCGATACACCTGTGGGGATCGATCTCGTCGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCGCCCAAATCTGATGATATCTATCTCAAGTTACTCGTCAAGCTTTACCGCTTCCTTGTTCGTCGGACTGGAAGCAAGTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAGGGTTAACAAACCTCCACTTTCACTCTCTAGGCTTATCCAGTTCACGAAAGGAAAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATATTCGTGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGCTTGACATTCGACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTTCTTCTTAGAGGTTCTAAGAACTCCCGGGAGGCTGTGAAGCATTTTGGTCCCGCGCCTGGTGTACCGCACAGCCATAGCAAACCGTATGTGAGGTCGAAGGGTAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGATACAGGGTTTGATTTGATCTTACGTTGTTTTCAAGCTAATTCAATGCCTATTGTGTGTTATTTTGAACTCAAAATGCAAATTTTGGTAGATTTTAGTTACCTATCAGTTGTTCCATCTCTGCTTACGATTCTGCCATAATACTGTTGATTACGAATCGATCGAATGCTATTCAGCGGGACTTTATAGTCCTTTTGTTAGATTGTGTGATGGCCATTTTGTGTCCGGTTCGTGTTAGATATCTATCTAGAATCCATTTGATTTGATGATGTTCATAAAAACTTGGATCATATTGCATGTCCTGGAAGTTTGTGGATTGATTAGCGATTATTGCAAGTGTAACACTCCTTGGATGTTGTTTGATATGAA

Coding sequence (CDS)

ATGTTCAAAAAGTTTTCTACTGAGGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTGTAACTAAGTGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATATCCTAACATTATGAAAAAATTACAAGTAGACAGAGGTGCCATAAAGTTTGTCCTTGCTGGTGCTAACATAATGTGTCCTGGTCTTACGTCCCCTGGCGGTGCCTTGGACGATGAAGTCGAAGCCGATACACCTGTGGGGATCGATCTCGTCGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCGCCCAAATCTGATGATATCTATCTCAAGTTACTCGTCAAGCTTTACCGCTTCCTTGTTCGTCGGACTGGAAGCAAGTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAGGGTTAACAAACCTCCACTTTCACTCTCTAGGCTTATCCAGTTCACGAAAGGAAAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATATTCGTGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGCTTGACATTCGACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTTCTTCTTAGAGGTTCTAAGAACTCCCGGGAGGCTGTGAAGCATTTTGGTCCCGCGCCTGGTGTACCGCACAGCCATAGCAAACCGTATGTGAGGTCGAAGGGTAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGATACAGGGTTTGA

Protein sequence

MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPVGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

Homology

[Close]

BLAST of Cp4.1LG18g00410 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 321.2 bits (822), Expect = 1.3e-86
Identity = 161/187 (86.10%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT SKFN VILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL++F  GKE KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 312 NSRGYRV 319
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG18g00410 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 7.0e-85
Identity = 158/187 (84.49%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ S FNAVILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL++F  GK+ KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHS++KPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 312 NSRGYRV 319
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG18g00410 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 2.0e-79
Identity = 151/184 (82.07%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 135 DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLS 194
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT S FNAVILKRLFMS+VN+PPLS
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 195 LSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFD 254
           LSRLI++ +GKE KI VVVG +TDDIRVY+VP +KV AL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 255 QLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSR 314
           QLALR PL  +TVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 315 GYRV 319
           G+RV
Sbjct: 181 GFRV 183

[Close]

BLAST of Cp4.1LG18g00410 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 282.3 bits (721), Expect = 6.6e-75
Identity = 143/188 (76.06%), Postives = 165/188 (87.77%), Query Frame = 0


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT SKFNAVILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL+++  GK+ KIAV+VGT+TDD+R+ +VPAL V ALRFTE+ARARI KAGGECL
Sbjct: 61  PLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECL 120

Query: 252 TFDQLALRAPL-GQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGK 311
           TFDQLAL  P   +NTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVR  G+K E ARG+
Sbjct: 121 TFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGR 180

Query: 312 RNSRGYRV 319
           R SRG++V
Sbjct: 181 RRSRGFKV 188

[Close]

BLAST of Cp4.1LG18g00410 vs. ExPASy Swiss-Prot
Match: Q4GXG7 (60S ribosomal protein L18 OS=Timarcha balearica OX=79517 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.0e-63
Identity = 119/177 (67.23%), Postives = 150/177 (84.75%), Query Frame = 0


Query: 143 KKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFT 202
           +K +RT PKS D+YL+LLVKLYR+L RRTG+KFN +ILKRLFMS++ +PP+SLS++++F 
Sbjct: 11  RKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFM 70

Query: 203 K--GKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRA 262
           K  G+E   AV+VGT+TDD R++E+P L + ALR T+TARA I KAGGE +TFDQLALR+
Sbjct: 71  KKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRS 130

Query: 263 PLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYR 318
           P G  TVLL+G +N+REAVKHFGPAPGVPHSH+KP VRSKGRKFERARG+R S GY+
Sbjct: 131 PTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARGRRRSCGYK 187

[Close]

BLAST of Cp4.1LG18g00410 vs. NCBI nr
Match: OWM72463.1 (hypothetical protein CDL15_Pgr018348 [Punica granatum])

HSP 1 Score: 554 bits (1428), Expect = 5.51e-193
Identity = 290/360 (80.56%), Postives = 308/360 (85.56%), Query Frame = 0


Query: 3   KKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVV 62
           K+FS EDVSAQNQVKASVQR+IRQSIAEEYPGLEPVL+DLLPKK+PLIV KCQNHLNLV+
Sbjct: 264 KRFSYEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLEDLLPKKSPLIVAKCQNHLNLVL 323

Query: 63  VNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGAL 122
           VNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGAL
Sbjct: 324 VNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGAL 383

Query: 123 DDEVEADTPV--------------------------------------------GIDLVA 182
           DD+VE++TPV                                            GIDL A
Sbjct: 384 DDKVESETPVAIMAEGKQHALAIGFTKMSAKDIRAVNKGIGVDNMHYLNDGLWKGIDLKA 443

Query: 183 GGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRL 242
           GGKSKKT+RTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMS+VNKPPLSLSRL
Sbjct: 444 GGKSKKTRRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKPPLSLSRL 503

Query: 243 IQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLAL 302
           I++  GK+ KIAVVVGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECLTFDQLAL
Sbjct: 504 IRYMSGKDDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLAL 563

Query: 303 RAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV 318
           RAPLGQNTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFERARG+RNSRG+RV
Sbjct: 564 RAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSRGFRV 623

[Close]

BLAST of Cp4.1LG18g00410 vs. NCBI nr
Match: RAL52647.1 (hypothetical protein DM860_007415 [Cuscuta australis])

HSP 1 Score: 541 bits (1394), Expect = 8.99e-192
Identity = 280/362 (77.35%), Postives = 302/362 (83.43%), Query Frame = 0


Query: 1   MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60
           MFKKF  E+VS QNQVKASVQR+IRQSIAEEYPGLE VLDDLLPKK+PLIV KC NHLNL
Sbjct: 1   MFKKFCNEEVSGQNQVKASVQRKIRQSIAEEYPGLEHVLDDLLPKKSPLIVAKCPNHLNL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVL+GANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGG 120

Query: 121 ALDDEVEADTPV--------------------------------------------GIDL 180
            LD+EVEA+TPV                                            GIDL
Sbjct: 121 VLDEEVEAETPVAIMAEGKQHALAIGFTKMSAKDIKSINKGIGVDNMHYLNDGLWKGIDL 180

Query: 181 VAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLS 240
            AGGKSK+TKRTAPKS+D+YLKLLVKLYRFLVRRTGSKFNAV+LKRLFMS+ N+PPLSLS
Sbjct: 181 KAGGKSKQTKRTAPKSEDVYLKLLVKLYRFLVRRTGSKFNAVVLKRLFMSKTNRPPLSLS 240

Query: 241 RLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQL 300
           RLI F  GKE KIAV+VGTITDD+RVYEVPA+KV ALRFT+TARARIEKAGGECLTFDQL
Sbjct: 241 RLIAFMSGKEDKIAVLVGTITDDVRVYEVPAMKVCALRFTQTARARIEKAGGECLTFDQL 300

Query: 301 ALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGY 318
           ALRAPLGQNT+LLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFE+ARG+RNSRGY
Sbjct: 301 ALRAPLGQNTILLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGY 360

[Close]

BLAST of Cp4.1LG18g00410 vs. NCBI nr
Match: KAF9681543.1 (hypothetical protein SADUNF_Sadunf05G0012500 [Salix dunnii])

HSP 1 Score: 541 bits (1394), Expect = 1.25e-191
Identity = 287/371 (77.36%), Postives = 306/371 (82.48%), Query Frame = 0


Query: 1   MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60
           MFKKFS+++VS+QNQVKASVQR+IRQSIA+EYPGLEPVLDD LPKK+PLIV KCQNHLNL
Sbjct: 1   MFKKFSSDEVSSQNQVKASVQRKIRQSIADEYPGLEPVLDDFLPKKSPLIVVKCQNHLNL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTS GG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSAGG 120

Query: 121 ALDDEVEADTPV--------------------------------------------GIDL 180
            LDDEV+A+TPV                                            GIDL
Sbjct: 121 VLDDEVDAETPVAIMAEGKQHALAIGFTKMSAKDIKSINKGIGVDNMHYLNDGLWKGIDL 180

Query: 181 VAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLS 240
             GGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMS++NK PLSLS
Sbjct: 181 KRGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKINKAPLSLS 240

Query: 241 RLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQL 300
           RLI F KGKE+KIAV+VGT+TDDIRVYEVPALKV ALRFTE ARARIEKAGGECLTFDQL
Sbjct: 241 RLITFMKGKENKIAVLVGTVTDDIRVYEVPALKVTALRFTERARARIEKAGGECLTFDQL 300

Query: 301 ALRAPLGQNT---------VLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERA 318
           ALRAPLGQNT         VLLRG KN+REAVKHFGPAPGVPHSH+KPYVR+KGRKFE+A
Sbjct: 301 ALRAPLGQNTSLAVFCSILVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFEKA 360

[Close]

BLAST of Cp4.1LG18g00410 vs. NCBI nr
Match: EEF49907.1 (60S ribosomal protein L18, putative [Ricinus communis])

HSP 1 Score: 536 bits (1381), Expect = 3.76e-189
Identity = 287/394 (72.84%), Postives = 307/394 (77.92%), Query Frame = 0


Query: 4   KFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVV 63
           KFS+++VS+QNQVKASVQR+IRQSIA+EYPGLEPVLDDLLPKK+PLIV KCQNHLNLV+V
Sbjct: 10  KFSSDEVSSQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVMV 69

Query: 64  NNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGALD 123
           N+VPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGALD
Sbjct: 70  NSVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGALD 129

Query: 124 DEVEADTPV--------------------------------------------------- 183
           +EVEA+TPV                                                   
Sbjct: 130 EEVEAETPVAIMAEGKQHALAIGFTKMSAKDIKTINKGIGVDNMHYLNDGLWKKNPAINS 189

Query: 184 ----------------------------GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLY 243
                                       GIDL AGGKSKKTKRTAPKSDDIYLKLLVKLY
Sbjct: 190 LQNPSYTFVPFPPLQQQQQQPTSRRASMGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLY 249

Query: 244 RFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYE 303
           RFLVRRTGSKFNAVILKRLFMS++NK PLSLSRLI F KGKESK AVVVGT+TDDIRVYE
Sbjct: 250 RFLVRRTGSKFNAVILKRLFMSKINKAPLSLSRLITFMKGKESKTAVVVGTVTDDIRVYE 309

Query: 304 VPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGP 318
           VPALKV AL+FTETARARIEKAGGECLTFDQLA+RAPLGQNTVLLRG KN+REAVKHFGP
Sbjct: 310 VPALKVTALKFTETARARIEKAGGECLTFDQLAMRAPLGQNTVLLRGPKNAREAVKHFGP 369

[Close]

BLAST of Cp4.1LG18g00410 vs. NCBI nr
Match: KAB5529198.1 (hypothetical protein DKX38_019279 [Salix brachista])

HSP 1 Score: 535 bits (1377), Expect = 9.58e-189
Identity = 287/390 (73.59%), Postives = 308/390 (78.97%), Query Frame = 0


Query: 1   MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60
           MFKKFS+++VS+QNQVKASVQR+IRQSIA+EYPGLE  LDDLLPKK+PLIV KCQNHLN+
Sbjct: 1   MFKKFSSDEVSSQNQVKASVQRKIRQSIADEYPGLEAALDDLLPKKSPLIVVKCQNHLNM 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYP+IMKKLQVDRGAIKFVLAGANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPSIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120

Query: 121 ALDDEVEADTPV--------------------------------------------GIDL 180
           ALDDEV+A+TPV                                            GIDL
Sbjct: 121 ALDDEVDAETPVAIMAEGKQHALAIGFTKMSAKEIKTINKGIGVDNMHYLNDGLWKGIDL 180

Query: 181 VAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLS 240
            AGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRT SKFNAVILKRLFMS++NK PLSLS
Sbjct: 181 KAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTQSKFNAVILKRLFMSKINKAPLSLS 240

Query: 241 RLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQL 300
           RLI +TKGKE KIAVVVGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECLTFDQL
Sbjct: 241 RLITYTKGKEGKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQL 300

Query: 301 ALRAPLGQNT----------------------------VLLRGSKNSREAVKHFGPAPGV 318
           ALRAPLGQNT                            VLLRG KN+REAVKHFGPAPGV
Sbjct: 301 ALRAPLGQNTFSRFFGLEFYLSFTMICVLPHVIFSNFLVLLRGPKNAREAVKHFGPAPGV 360

[Close]

BLAST of Cp4.1LG18g00410 vs. ExPASy TrEMBL
Match: A0A218WIU0 (PUA domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr018348 PE=3 SV=1)

HSP 1 Score: 554 bits (1428), Expect = 2.67e-193
Identity = 290/360 (80.56%), Postives = 308/360 (85.56%), Query Frame = 0


Query: 3   KKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVV 62
           K+FS EDVSAQNQVKASVQR+IRQSIAEEYPGLEPVL+DLLPKK+PLIV KCQNHLNLV+
Sbjct: 264 KRFSYEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLEDLLPKKSPLIVAKCQNHLNLVL 323

Query: 63  VNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGAL 122
           VNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGAL
Sbjct: 324 VNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGAL 383

Query: 123 DDEVEADTPV--------------------------------------------GIDLVA 182
           DD+VE++TPV                                            GIDL A
Sbjct: 384 DDKVESETPVAIMAEGKQHALAIGFTKMSAKDIRAVNKGIGVDNMHYLNDGLWKGIDLKA 443

Query: 183 GGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRL 242
           GGKSKKT+RTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMS+VNKPPLSLSRL
Sbjct: 444 GGKSKKTRRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKPPLSLSRL 503

Query: 243 IQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLAL 302
           I++  GK+ KIAVVVGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECLTFDQLAL
Sbjct: 504 IRYMSGKDDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLAL 563

Query: 303 RAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV 318
           RAPLGQNTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFERARG+RNSRG+RV
Sbjct: 564 RAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSRGFRV 623

[Close]

BLAST of Cp4.1LG18g00410 vs. ExPASy TrEMBL
Match: A0A328E3X4 (PUA domain-containing protein OS=Cuscuta australis OX=267555 GN=DM860_007415 PE=3 SV=1)

HSP 1 Score: 541 bits (1394), Expect = 4.35e-192
Identity = 280/362 (77.35%), Postives = 302/362 (83.43%), Query Frame = 0


Query: 1   MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60
           MFKKF  E+VS QNQVKASVQR+IRQSIAEEYPGLE VLDDLLPKK+PLIV KC NHLNL
Sbjct: 1   MFKKFCNEEVSGQNQVKASVQRKIRQSIAEEYPGLEHVLDDLLPKKSPLIVAKCPNHLNL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVL+GANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGG 120

Query: 121 ALDDEVEADTPV--------------------------------------------GIDL 180
            LD+EVEA+TPV                                            GIDL
Sbjct: 121 VLDEEVEAETPVAIMAEGKQHALAIGFTKMSAKDIKSINKGIGVDNMHYLNDGLWKGIDL 180

Query: 181 VAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLS 240
            AGGKSK+TKRTAPKS+D+YLKLLVKLYRFLVRRTGSKFNAV+LKRLFMS+ N+PPLSLS
Sbjct: 181 KAGGKSKQTKRTAPKSEDVYLKLLVKLYRFLVRRTGSKFNAVVLKRLFMSKTNRPPLSLS 240

Query: 241 RLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQL 300
           RLI F  GKE KIAV+VGTITDD+RVYEVPA+KV ALRFT+TARARIEKAGGECLTFDQL
Sbjct: 241 RLIAFMSGKEDKIAVLVGTITDDVRVYEVPAMKVCALRFTQTARARIEKAGGECLTFDQL 300

Query: 301 ALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGY 318
           ALRAPLGQNT+LLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFE+ARG+RNSRGY
Sbjct: 301 ALRAPLGQNTILLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGY 360

[Close]

BLAST of Cp4.1LG18g00410 vs. ExPASy TrEMBL
Match: A0A6N2KBM1 (PUA domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS63739 PE=3 SV=1)

HSP 1 Score: 537 bits (1383), Expect = 6.78e-190
Identity = 287/395 (72.66%), Postives = 308/395 (77.97%), Query Frame = 0


Query: 1   MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60
           MFKKFS+++VS+QNQVKASVQR+IRQSIA+EYPGLE  LDDLLPKK+PLIV KCQNHLN+
Sbjct: 1   MFKKFSSDEVSSQNQVKASVQRKIRQSIADEYPGLEAALDDLLPKKSPLIVVKCQNHLNM 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYP+IMKKLQVDRGAIKFVLAGANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPSIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120

Query: 121 ALDDEVEADTPV------------------------------------------------ 180
           ALDDEV+A+TPV                                                
Sbjct: 121 ALDDEVDAETPVAIMAEGKQHALAIGFTKMSAKDIKTINKGIGVDNMHYLNDGLWKLIKN 180

Query: 181 -----------------------------GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKL 240
                                        GIDL AGGKSKKTKRTAPKSDDIYLKLLVKL
Sbjct: 181 PNFIFCSPLQLPAAAPLAVAAGIVKASTMGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKL 240

Query: 241 YRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVY 300
           YRFLVRRT SKFNAVILKRLFMS++NK PLSLSRLI +TKGKE KIAVVVGT+TDDIRVY
Sbjct: 241 YRFLVRRTQSKFNAVILKRLFMSKINKAPLSLSRLITYTKGKEGKIAVVVGTVTDDIRVY 300

Query: 301 EVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFG 318
           EVPALKV ALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRG KN+REAVKHFG
Sbjct: 301 EVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFG 360

[Close]

BLAST of Cp4.1LG18g00410 vs. ExPASy TrEMBL
Match: B9RFD6 (60S ribosomal protein L18, putative OS=Ricinus communis OX=3988 GN=RCOM_1433890 PE=3 SV=1)

HSP 1 Score: 536 bits (1381), Expect = 1.82e-189
Identity = 287/394 (72.84%), Postives = 307/394 (77.92%), Query Frame = 0


Query: 4   KFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVV 63
           KFS+++VS+QNQVKASVQR+IRQSIA+EYPGLEPVLDDLLPKK+PLIV KCQNHLNLV+V
Sbjct: 10  KFSSDEVSSQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVMV 69

Query: 64  NNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGALD 123
           N+VPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGALD
Sbjct: 70  NSVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGALD 129

Query: 124 DEVEADTPV--------------------------------------------------- 183
           +EVEA+TPV                                                   
Sbjct: 130 EEVEAETPVAIMAEGKQHALAIGFTKMSAKDIKTINKGIGVDNMHYLNDGLWKKNPAINS 189

Query: 184 ----------------------------GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLY 243
                                       GIDL AGGKSKKTKRTAPKSDDIYLKLLVKLY
Sbjct: 190 LQNPSYTFVPFPPLQQQQQQPTSRRASMGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLY 249

Query: 244 RFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYE 303
           RFLVRRTGSKFNAVILKRLFMS++NK PLSLSRLI F KGKESK AVVVGT+TDDIRVYE
Sbjct: 250 RFLVRRTGSKFNAVILKRLFMSKINKAPLSLSRLITFMKGKESKTAVVVGTVTDDIRVYE 309

Query: 304 VPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGP 318
           VPALKV AL+FTETARARIEKAGGECLTFDQLA+RAPLGQNTVLLRG KN+REAVKHFGP
Sbjct: 310 VPALKVTALKFTETARARIEKAGGECLTFDQLAMRAPLGQNTVLLRGPKNAREAVKHFGP 369

[Close]

BLAST of Cp4.1LG18g00410 vs. ExPASy TrEMBL
Match: A0A5N5KFW0 (PUA domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_019279 PE=3 SV=1)

HSP 1 Score: 535 bits (1377), Expect = 4.64e-189
Identity = 287/390 (73.59%), Postives = 308/390 (78.97%), Query Frame = 0


Query: 1   MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60
           MFKKFS+++VS+QNQVKASVQR+IRQSIA+EYPGLE  LDDLLPKK+PLIV KCQNHLN+
Sbjct: 1   MFKKFSSDEVSSQNQVKASVQRKIRQSIADEYPGLEAALDDLLPKKSPLIVVKCQNHLNM 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYP+IMKKLQVDRGAIKFVLAGANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPSIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120

Query: 121 ALDDEVEADTPV--------------------------------------------GIDL 180
           ALDDEV+A+TPV                                            GIDL
Sbjct: 121 ALDDEVDAETPVAIMAEGKQHALAIGFTKMSAKEIKTINKGIGVDNMHYLNDGLWKGIDL 180

Query: 181 VAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLS 240
            AGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRT SKFNAVILKRLFMS++NK PLSLS
Sbjct: 181 KAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTQSKFNAVILKRLFMSKINKAPLSLS 240

Query: 241 RLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQL 300
           RLI +TKGKE KIAVVVGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECLTFDQL
Sbjct: 241 RLITYTKGKEGKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQL 300

Query: 301 ALRAPLGQNT----------------------------VLLRGSKNSREAVKHFGPAPGV 318
           ALRAPLGQNT                            VLLRG KN+REAVKHFGPAPGV
Sbjct: 301 ALRAPLGQNTFSRFFGLEFYLSFTMICVLPHVIFSNFLVLLRGPKNAREAVKHFGPAPGV 360

[Close]

BLAST of Cp4.1LG18g00410 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 321.2 bits (822), Expect = 9.1e-88
Identity = 161/187 (86.10%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT SKFN VILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL++F  GKE KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 312 NSRGYRV 319
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG18g00410 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 315.5 bits (807), Expect = 5.0e-86
Identity = 158/187 (84.49%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ S FNAVILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL++F  GK+ KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHS++KPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 312 NSRGYRV 319
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG18g00410 vs. TAIR 10
Match: AT1G09150.1 (pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein )

HSP 1 Score: 228.8 bits (582), Expect = 6.2e-60
Identity = 111/134 (82.84%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60
           MFKKF  E++S+QNQVKASVQRRIRQSI +EYPGLE V++DLLPKK PLIV KC NHL L
Sbjct: 1   MFKKFCLEEISSQNQVKASVQRRIRQSIQDEYPGLESVMEDLLPKKIPLIVVKCPNHLTL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFF IRDGPYMPTLRLLHQYPNIMK+ QVDRGAIKFVL+GANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFCIRDGPYMPTLRLLHQYPNIMKRFQVDRGAIKFVLSGANIMCPGLTSPGG 120

Query: 121 ALDDEVEADTPVGI 135
            LD EVEA+ PV I
Sbjct: 121 VLDQEVEAERPVAI 134

[Close]

BLAST of Cp4.1LG18g00410 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 197.6 bits (501), Expect = 1.5e-50
Identity = 98/135 (72.59%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 185 MSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 244
           MS+VNK PLSLSRL+++  GK+ KIAV+VGT+TDD+R+ +VPAL V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 245 KAGGECLTFDQLALRAPL-GQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRK 304
           KAGGECLTFDQLAL  P   +NTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 305 FERARGKRNSRGYRV 319
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of Cp4.1LG18g00410 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 197.6 bits (501), Expect = 1.5e-50
Identity = 98/135 (72.59%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 185 MSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 244
           MS+VNK PLSLSRL+++  GK+ KIAV+VGT+TDD+R+ +VPAL V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 245 KAGGECLTFDQLALRAPL-GQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRK 304
           KAGGECLTFDQLAL  P   +NTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 305 FERARGKRNSRGYRV 319
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g00410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42791	1.3e-86	86.10	60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2	[more]
Q940B0	7.0e-85	84.49	60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1	[more]
O65729	2.0e-79	82.07	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV...	[more]
O22254	6.6e-75	76.06	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P...	[more]
Q4GXG7	2.0e-63	67.23	60S ribosomal protein L18 OS=Timarcha balearica OX=79517 GN=RpL18 PE=2 SV=1	[more]

BLAST of Cp4.1LG18g00410 vs. NCBI nr


Match Name	E-value	Identity	Description
OWM72463.1	5.51e-193	80.56	hypothetical protein CDL15_Pgr018348 [Punica granatum]	[more]
RAL52647.1	8.99e-192	77.35	hypothetical protein DM860_007415 [Cuscuta australis]	[more]
KAF9681543.1	1.25e-191	77.36	hypothetical protein SADUNF_Sadunf05G0012500 [Salix dunnii]	[more]
EEF49907.1	3.76e-189	72.84	60S ribosomal protein L18, putative [Ricinus communis]	[more]
KAB5529198.1	9.58e-189	73.59	hypothetical protein DKX38_019279 [Salix brachista]	[more]

BLAST of Cp4.1LG18g00410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218WIU0	2.67e-193	80.56	PUA domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr018348 PE=...	[more]
A0A328E3X4	4.35e-192	77.35	PUA domain-containing protein OS=Cuscuta australis OX=267555 GN=DM860_007415 PE=...	[more]
A0A6N2KBM1	6.78e-190	72.66	PUA domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS63739 PE=...	[more]
B9RFD6	1.82e-189	72.84	60S ribosomal protein L18, putative OS=Ricinus communis OX=3988 GN=RCOM_1433890 ...	[more]
A0A5N5KFW0	4.64e-189	73.59	PUA domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_019279 PE=3...	[more]

BLAST of Cp4.1LG18g00410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05590.1	9.1e-88	86.10	ribosomal protein L18	[more]
AT5G27850.1	5.0e-86	84.49	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G09150.1	6.2e-60	82.84	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing ...	[more]
AT2G47570.1	1.5e-50	72.59	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.2	1.5e-50	72.59	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 133..318 e-value: 9.9E-94 score: 312.0
IPR004521	Uncharacterised domain CHP00451	TIGRFAM	TIGR00451	TIGR00451	coord: 62..123 e-value: 4.4E-12 score: 44.1
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 93..130 e-value: 5.1E-7 score: 29.6
IPR041366	Pre-PUA domain	PFAM	PF17832	Pre-PUA	coord: 7..88 e-value: 3.5E-26 score: 91.7
None	No IPR available	GENE3D	3.100.10.10		coord: 132..318 e-value: 5.4E-98 score: 328.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 295..318
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 281..318
None	No IPR available	PANTHER	PTHR10934:SF16	BNAC02G39900D PROTEIN	coord: 128..318
None	No IPR available	PROSITE	PS50890	PUA	coord: 91..120 score: 10.284044
None	No IPR available	CDD	cd11609	MCT1_N	coord: 3..79 e-value: 9.79893E-43 score: 139.977
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 128..318
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 151..270
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 92..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g00410.1	Cp4.1LG18g00410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001731	formation of translation preinitiation complex
biological_process	GO:0043086	negative regulation of catalytic activity
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004857	enzyme inhibitor activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding