Cp4.1LG18g00110 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g00110
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	PsbP domain-containing protein
Location	Cp4.1LG18: 267033 .. 270523 (-)
RNA-Seq Expression	Cp4.1LG18g00110
Synteny	Cp4.1LG18g00110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTAATGTTCGAAAATCTAAGTTAGTCTCTTTTATCCGCTTATCTTATCTTATGAATCTGAAAAACCTCTGTTTTCTCTCGTTTCCTCCTCCGTTCTTAGAGCGAGAGAGACAGATTCCCGAAAATGGCTGTAATCCTCGATTCCTTCTTACCTCCAATTCACACACTCACTTCTTCATCTCGGAAATGGATTCCAACCGCTTCCTCGTCTCCGCGATGGCCGCCGATCGATTCATCCCCCAAATCTCGCTTCTCACTCAGTTCTGAATCTCAACCGGTAATTCTTCCAAAATCACTACACAAACTGTAATCTGGAACTTGTTGCTTGCATTTATCGGCATCGCTTTCTAATATGTAACCAGATTAAAGCCCTTGCAGTTCCGAGGAGGAGTGCAATGGCGTTAATCTTGTAATCTGGAACTTGTTTCTTGCATTTATCGCTATCGCTTTCGCTTTATAATGTGTAATCAGATTAAAGCCGTTGCAGTTCCGAGAAGGAGCGCAATGGCGTTGATCTTGTAGTCTGGAACTTGTTTCTTGCATTTATCGCTATCGCTTTCTAATATGTAATCAGATTAAAGCCGTTGCAGTTCCGAGGAGGAGTGCAATGGCGTTGATCTTGTAATCTGGAACTTGTTTCTTGCATTTATCGCTATCGCTTTCTAATGTGTAATCAGATTAAAGCCGTTGCAGTTCCGAGGAGGAGTGCAATGGCGTTGATCTTGTAATCTGGAACTTGTTTCTTGCATTTATCGCTATCGCTTTCTAATGTGTAATCAGATTAAAGCCGTTGCAGTTCCGAGGAGGAGTGCAATGGCGTTGATCTTGTAATCTGGAACTTGTTTCTTGCATTTATCGCTATCGCTTTCTAATGTGTAATCAGATTAAAGCCGTTGCAGTTCCGAAGAGGAGTGCAATGGCGTTGATCTTGTAATCTGGAACTTGTTTCTTGCATTTATCGCTATCGCTTTCTAATGTGTAATCAGATTAAAGGCCTTGCAGTTCCGAGGAGGAGTGCGATGGCGTTGATCTTGTCCTCTTGTATTTTCTCGAATTCGGCATTGGCTGAGCAATCTGTTGGATTATTGGAATACATTGACACATTTGATGGCTATTCGTTCAATTACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGACATATTCTTTAGGGATCCGTTTGTTCTTGATGAGAATATTTCCGTGGAGTTCTCGTCGCCGTCTTCTTCTAGGTATAAGAGCGTTGAGGATTTGGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAACAGTATTTGACAGAGTTCATGTCTACAAGGCTTGGGGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCAAGAATGGCGGATGATGGCAGGACTTACTACCAAGTTGAGGTAATGTGAATATTGAGAAGTTTCATATGATTATTGTCCATCTTTTCCTGCTTCAATTCTATCCATTTTGGAAAGTGGTTTACACAAAATTTTGAAAGTTCATGAAGATATTTAAGATTTAGAAACTCGGTGGAAACAAGGATCTATCGAGATTCATTCAATACAAATTCAAATTTGTTTGATAAGACTTGTAGATCCCACATAAGTTGGAGAGGGGAATCAAATATTTTTTTATAAGAGTGTGGAAACCTTTCCCTATTTGACGCGTTTTAAAAATCTTGTGGGTAAGCTCGAGGACAGCCCAAAGAGGACAATATTTGCTAGTGGTGGACTTGGGTTGTTATATATAGCATCAGGACACAGCGAGGACGTTTAGCCCTGAAGGGGGTGGACATCGGGAGGTGTGCCAACAAGGACCCTGGCCCTAAAGGGGGTGGCTTGTGAGATCCCACATCGATTGGAGAGAGGAACGAGTGTCGGCGAGGAGGCTAGGCCTCGAAGGGGGGGGTGGATTGTGAGATCCCATATCTGTTAGAAACGAAGCATTGTTTTATGAAAACCTCTCCCTAGCAGACGAGTTTTAAAAACGCGTGAAAGAGGACAATATTTGCTAGTGGTGGACTTGGACTGTTACAAATAGTATTAGGATACAACGAGGACGCTTAGCCTCGAAGGGGGTGGACACCGGGAGGTGTGCCAACAAGGACGTTGGGTCCTTAAGGGGGGTGGATTGTGAGATCCCACACTAATTAGAGAGAGGAACAAGTGTCAGCGAGGAGGCTAGGCCCCAAAGGGAGGTGAATTGTGAGATCCCACCTCGGTTAGAAACAAAGCATTCTTTCTAAGGTTATGAAAACCTCTCCCTAGAAGCATTTTAAAAACGCGTGAAAGAGAAAGCCGTAAGAAGTGGGTGGATTGTGAGATCCCACATTGGTTAGAAACAAAGCATTCTTTATTATAAAGTTATGAAAACCTCTACCTAGTAGACGTGTTTTAAAAACGTGTGAAAGAGAAAGCCCTAAAATAACAATATTTGCTAGCAGTGGACTTGAACCGTTACAACACTCGGAGGTTTTCTACCTTTTGAGATTTCATAGTTCATTCTTTGACATTAAATAATGTAACATCTCTAAAGTACTTAGTTTACTATTATTATTTTTTTTTTTTTCATGATTATCAATATTAAACAATACCACCCTCAATTGCATATCAGGTAAACATAAAGTCATATGCAAACAACAATGAACTGGCAGTAATGCCACAGGATCGGGTGGTTCGTCTGGAATGGGACCGAAGATATCTCTCCGTTCTCGGAGTCGAAAACAATCGGCTGTACGAACTGAGATTACAAACCCCAGAAAATGTGTTTGTAGAAGAAGAAAATGAGCTGCGTCAAGTTATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGAAATGAAGCACAAGAGGAGGGCTTGTTTTCAGATACAATAGCTGAAATATTGTACTTTCTATCATCAAATCACTACTGGATTTTACAGTAATTTAACATTGAACCAAAGATTGTGCTCACAACTTCACAATTGGGTAGAGTACCGTTATAGCTTACGACCTTACTTCGAACTTCCCAGCTCGTGTTAGAGCTCGAAAGCCTTTGTAAGGATGATTTGGCAAGTTCTTCACGTCGAGTTTATCTACTTGCAGGGCAGAGAGAACTAAACCCATGATCTTAAAACGTACTTGAAATGTTGGAAATATATGAAGCTGTTGTAATCCTGTCTCGAGTGTTAATGTTCCAGACATTGAAGGGGTTTTATCTTTTGGCATCTTTCCAATTGTCCAAGAACACATCTGTAGAAATAAAACGGTATTCAATTTTTAGTATATCATGAGAGAATAAGAATAAGAAGAATAGAAAATAGTTTCCTTAAACAAATGAACGTACAATACTAATTACTCTTACAGAAAATTGTTACGAATCACGAACCTCCACAATAATATTGTCCACTTTGAGTATAAGCTCTCATGGCTTGCTTATAAATCCATGATCATCTCCGTAATTAGTCAATGTGAGATTCCCTCTCAAGAATCCTCCCCTCGTAC

mRNA sequence

CATTAATGTTCGAAAATCTAAGTTAGTCTCTTTTATCCGCTTATCTTATCTTATGAATCTGAAAAACCTCTGTTTTCTCTCGTTTCCTCCTCCGTTCTTAGAGCGAGAGAGACAGATTCCCGAAAATGGCTGTAATCCTCGATTCCTTCTTACCTCCAATTCACACACTCACTTCTTCATCTCGGAAATGGATTCCAACCGCTTCCTCGTCTCCGCGATGGCCGCCGATCGATTCATCCCCCAAATCTCGCTTCTCACTCAGTTCTGAATCTCAACCGATTAAAGGCCTTGCAGTTCCGAGGAGGAGTGCGATGGCGTTGATCTTGTCCTCTTGTATTTTCTCGAATTCGGCATTGGCTGAGCAATCTGTTGGATTATTGGAATACATTGACACATTTGATGGCTATTCGTTCAATTACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGACATATTCTTTAGGGATCCGTTTGTTCTTGATGAGAATATTTCCGTGGAGTTCTCGTCGCCGTCTTCTTCTAGGTATAAGAGCGTTGAGGATTTGGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAACAGTATTTGACAGAGTTCATGTCTACAAGGCTTGGGGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCAAGAATGGCGGATGATGGCAGGACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAACTGGCAGTAATGCCACAGGATCGGGTGGTTCGTCTGGAATGGGACCGAAGATATCTCTCCGTTCTCGGAGTCGAAAACAATCGGCTGTACGAACTGAGATTACAAACCCCAGAAAATGTGTTTGTAGAAGAAGAAAATGAGCTGCGTCAAGTTATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGAAATGAAGCACAAGAGGAGGGCTTGTTTTCAGATACAATAGCTGAAATATTGTACTTTCTATCATCAAATCACTACTGGATTTTACAGTAATTTAACATTGAACCAAAGATTGTGCTCACAACTTCACAATTGGGTAGAGTACCGTTATAGCTTACGACCTTACTTCGAACTTCCCAGCTCGTGTTAGAGCTCGAAAGCCTTTGTAAGGATGATTTGGCAAGTTCTTCACGTCGAGTTTATCTACTTGCAGGGCAGAGAGAACTAAACCCATGATCTTAAAACGTACTTGAAATGTTGGAAATATATGAAGCTGTTGTAATCCTGTCTCGAGTGTTAATGTTCCAGACATTGAAGGGGTTTTATCTTTTGGCATCTTTCCAATTGTCCAAGAACACATCTGTAGAAATAAAACGGTATTCAATTTTTAGTATATCATGAGAGAATAAGAATAAGAAGAATAGAAAATAGTTTCCTTAAACAAATGAACGTACAATACTAATTACTCTTACAGAAAATTGTTACGAATCACGAACCTCCACAATAATATTGTCCACTTTGAGTATAAGCTCTCATGGCTTGCTTATAAATCCATGATCATCTCCGTAATTAGTCAATGTGAGATTCCCTCTCAAGAATCCTCCCCTCGTAC

Coding sequence (CDS)

ATGGCTGTAATCCTCGATTCCTTCTTACCTCCAATTCACACACTCACTTCTTCATCTCGGAAATGGATTCCAACCGCTTCCTCGTCTCCGCGATGGCCGCCGATCGATTCATCCCCCAAATCTCGCTTCTCACTCAGTTCTGAATCTCAACCGATTAAAGGCCTTGCAGTTCCGAGGAGGAGTGCGATGGCGTTGATCTTGTCCTCTTGTATTTTCTCGAATTCGGCATTGGCTGAGCAATCTGTTGGATTATTGGAATACATTGACACATTTGATGGCTATTCGTTCAATTACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGACATATTCTTTAGGGATCCGTTTGTTCTTGATGAGAATATTTCCGTGGAGTTCTCGTCGCCGTCTTCTTCTAGGTATAAGAGCGTTGAGGATTTGGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAACAGTATTTGACAGAGTTCATGTCTACAAGGCTTGGGGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCAAGAATGGCGGATGATGGCAGGACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAACTGGCAGTAATGCCACAGGATCGGGTGGTTCGTCTGGAATGGGACCGAAGATATCTCTCCGTTCTCGGAGTCGAAAACAATCGGCTGTACGAACTGAGATTACAAACCCCAGAAAATGTGTTTGTAGAAGAAGAAAATGAGCTGCGTCAAGTTATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGA

Protein sequence

MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIKGLAVPRRSAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENELRQVMDSFRVNKVNA

Homology

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BLAST of Cp4.1LG18g00110 vs. ExPASy Swiss-Prot
Match: O23403 (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD1 PE=1 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.2e-82
Identity = 165/243 (67.90%), Postives = 196/243 (80.66%), Query Frame = 0


Query: 27  SSSPRWPPIDSS-PKSRFSLSSESQPIKGLAVPRRSA--MALILSSCIFSN----SALAE 86
           SS P++    S+ P+S  +++  +   +  AV RR +  M L++S  I S     +A A 
Sbjct: 46  SSGPKYQSAKSAKPESPVAINCLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANLPTAFAS 105

Query: 87  QSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSV 146
             V   EYIDTFDGYSF YP+NWIQVRGAGADIFFRDP VLDEN+SVEFSSPSSS Y S+
Sbjct: 106 TPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSL 165

Query: 147 EDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYAN 206
           EDLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSSR+ADDG+ YYQVEVNIKSYAN
Sbjct: 166 EDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYAN 225

Query: 207 NNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENELRQVMDSFRV 263
           NNELAVMPQDRV RLEW+RRYL+VLGVEN+RLY +RLQTPE VF+EEE +LR+VMDSFRV
Sbjct: 226 NNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRV 285

[Close]

BLAST of Cp4.1LG18g00110 vs. ExPASy Swiss-Prot
Match: O80634 (Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL1 PE=1 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 3.0e-04
Identity = 49/225 (21.78%), Postives = 93/225 (41.33%), Query Frame = 0


Query: 46  SSESQPIKGLAVPRRSAMALI-----LSSCIFSNSALAEQ-SVGLLEYIDTFDGYSFNYP 105
           SSES   KG     +   AL+     +++ I +   LAE+       ++D  DGYS+ YP
Sbjct: 44  SSESTYQKGSGNNWKRRQALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYP 103

Query: 106 KNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTE 165
            +W +      D  F+D ++  +N+ V F     +    + ++GP EE    ++K     
Sbjct: 104 SDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKN---DIHEVGPMEEVVYDLVKH---- 163

Query: 166 FMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKS--YANNNELAVMPQDRVVRLEWD 225
               +     +   +       +DG+ YY  E  +++  YA  +                
Sbjct: 164 ----KFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTS---------------- 223

Query: 226 RRYLSVLGVENNRLYELRLQTPENVFVEEENELRQVMDSFRVNKV 263
               + + V NNR Y L +   E  + + + +L+ V DS ++ ++
Sbjct: 224 ---FATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

[Close]

BLAST of Cp4.1LG18g00110 vs. NCBI nr
Match: XP_023515691.1 (psbP domain-containing protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 517 bits (1332), Expect = 7.95e-185
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIKGLAVPRR 60
           MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIKGLAVPRR
Sbjct: 1   MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIKGLAVPRR 60

Query: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120
           SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 264
           NVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of Cp4.1LG18g00110 vs. NCBI nr
Match: XP_022961486.1 (psbP domain-containing protein 1, chloroplastic [Cucurbita moschata] >KAG6590498.1 PsbP domain-containing protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024032.1 PsbP domain-containing protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 511 bits (1317), Expect = 1.54e-182
Identity = 261/264 (98.86%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1   MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIKGLAVPRR 60
           MAVILDSFLPPIHTL+SSSRKWIPTASSSPRWPPIDSSPK RFSLSSESQPIK LAVPRR
Sbjct: 1   MAVILDSFLPPIHTLSSSSRKWIPTASSSPRWPPIDSSPKCRFSLSSESQPIKALAVPRR 60

Query: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120
           SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 264
           NVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of Cp4.1LG18g00110 vs. NCBI nr
Match: XP_022968780.1 (psbP domain-containing protein 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 508 bits (1308), Expect = 3.63e-181
Identity = 258/264 (97.73%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1   MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIKGLAVPRR 60
           MAVILDSFLPPIHTL+SSSRKWIPTAS SPRWPPIDSSPKSRFSL+SES+PIK LAVPRR
Sbjct: 1   MAVILDSFLPPIHTLSSSSRKWIPTASPSPRWPPIDSSPKSRFSLTSESKPIKALAVPRR 60

Query: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120
           SAMALILSSCIFSNSA+AEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 264
           NVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of Cp4.1LG18g00110 vs. NCBI nr
Match: XP_038894971.1 (psbP domain-containing protein 1, chloroplastic [Benincasa hispida] >XP_038894972.1 psbP domain-containing protein 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 441 bits (1134), Expect = 1.11e-154
Identity = 235/267 (88.01%), Postives = 246/267 (92.13%), Query Frame = 0


Query: 1   MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIK-GLAVPR 60
           MAVIL+SFLPPIHTL SS R+ IP  S SPRWP +DSSPK R    SESQ IK G+AVPR
Sbjct: 1   MAVILNSFLPPIHTLISSIRQRIPCTSPSPRWP-MDSSPKCR----SESQSIKKGVAVPR 60

Query: 61  RSAMALILSSCIFSNSALAEQS--VGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDP 120
           RSAMAL+LS+ IFSNSALAE S  VGLLEYIDTFDGYSF YPKNWIQVRGAG+DIFFRDP
Sbjct: 61  RSAMALMLSTYIFSNSALAEPSPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGSDIFFRDP 120

Query: 121 FVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 180
           FVLDEN+ VEFSSPSSSRY SV+DLGPPEEAGK+VLKQYLTEFMSTRLGVRRESNILSTS
Sbjct: 121 FVLDENLLVEFSSPSSSRYNSVQDLGPPEEAGKRVLKQYLTEFMSTRLGVRRESNILSTS 180

Query: 181 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQ 240
           SRMADDG+TYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQ
Sbjct: 181 SRMADDGKTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQ 240

Query: 241 TPENVFVEEENELRQVMDSFRVNKVNA 264
           TPENVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 TPENVFVEEENELRQVMDSFRVNKVNA 262

[Close]

BLAST of Cp4.1LG18g00110 vs. NCBI nr
Match: XP_004139523.1 (psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus] >KAE8652838.1 hypothetical protein Csa_022829 [Cucumis sativus])

HSP 1 Score: 440 bits (1131), Expect = 2.75e-154
Identity = 232/264 (87.88%), Postives = 245/264 (92.80%), Query Frame = 0


Query: 1   MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIKGLAVPRR 60
           MAVILDSFLP I TL+SS R+ IP+ SS+ RWP ++S PK      SESQ IKG+AVPRR
Sbjct: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSST-RWP-MNSFPK----CCSESQSIKGVAVPRR 60

Query: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120
           SAMAL+LS+CIFSNSALA  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 264
           NVFVEEEN+LRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENDLRQVMDSFRVNKVNA 258

[Close]

BLAST of Cp4.1LG18g00110 vs. ExPASy TrEMBL
Match: A0A6J1HAH2 (psbP domain-containing protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111462051 PE=4 SV=1)

HSP 1 Score: 511 bits (1317), Expect = 7.45e-183
Identity = 261/264 (98.86%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1   MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIKGLAVPRR 60
           MAVILDSFLPPIHTL+SSSRKWIPTASSSPRWPPIDSSPK RFSLSSESQPIK LAVPRR
Sbjct: 1   MAVILDSFLPPIHTLSSSSRKWIPTASSSPRWPPIDSSPKCRFSLSSESQPIKALAVPRR 60

Query: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120
           SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 264
           NVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of Cp4.1LG18g00110 vs. ExPASy TrEMBL
Match: A0A6J1HY63 (psbP domain-containing protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467914 PE=4 SV=1)

HSP 1 Score: 508 bits (1308), Expect = 1.76e-181
Identity = 258/264 (97.73%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1   MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIKGLAVPRR 60
           MAVILDSFLPPIHTL+SSSRKWIPTAS SPRWPPIDSSPKSRFSL+SES+PIK LAVPRR
Sbjct: 1   MAVILDSFLPPIHTLSSSSRKWIPTASPSPRWPPIDSSPKSRFSLTSESKPIKALAVPRR 60

Query: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120
           SAMALILSSCIFSNSA+AEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 264
           NVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of Cp4.1LG18g00110 vs. ExPASy TrEMBL
Match: A0A6J1DTH5 (psbP domain-containing protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111023855 PE=4 SV=1)

HSP 1 Score: 433 bits (1114), Expect = 8.56e-152
Identity = 233/273 (85.35%), Postives = 247/273 (90.48%), Query Frame = 0


Query: 1   MAVILDSFLPPIHTLTSSSRKWIPTA--SSSPRWPPIDSSPKSRFSL--SSESQPIKGLA 60
           MAVILDS  PPIH+L+SS R+ IPT   S SPRWP  DS PKSR SL   S+SQ IK LA
Sbjct: 1   MAVILDSLSPPIHSLSSSIRRRIPTTLPSPSPRWP-TDSFPKSRASLISQSQSQTIKALA 60

Query: 61  VPRRSAMALILSSCIFSNS----ALAEQ-SVGLLEYIDTFDGYSFNYPKNWIQVRGAGAD 120
           VPRRSAMALILS+CIFSN+    ALA+  S GLLEYIDTFDGYSF YPKNWIQVRGAGAD
Sbjct: 61  VPRRSAMALILSTCIFSNTNTNTALADPPSPGLLEYIDTFDGYSFKYPKNWIQVRGAGAD 120

Query: 121 IFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRES 180
           IFFRDP+VLDEN+SVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRES
Sbjct: 121 IFFRDPYVLDENLSVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRES 180

Query: 181 NILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRL 240
           N+LSTSSR ADDG+TYYQVEVNIKSYAN+NELAVMPQDRVVRLEWDRRYLSVLGVEN+RL
Sbjct: 181 NVLSTSSRTADDGKTYYQVEVNIKSYANSNELAVMPQDRVVRLEWDRRYLSVLGVENSRL 240

Query: 241 YELRLQTPENVFVEEENELRQVMDSFRVNKVNA 264
           YELRLQTPENVFVEEENELRQVMDSFRVN+VNA
Sbjct: 241 YELRLQTPENVFVEEENELRQVMDSFRVNRVNA 272

[Close]

BLAST of Cp4.1LG18g00110 vs. ExPASy TrEMBL
Match: A0A5D3E4R5 (PsbP domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00220 PE=4 SV=1)

HSP 1 Score: 428 bits (1101), Expect = 4.95e-150
Identity = 228/264 (86.36%), Postives = 238/264 (90.15%), Query Frame = 0


Query: 1   MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIKGLAVPRR 60
           MAVIL SFLP I TLTS  R+ IP+ SS+    PI S PK      S+SQ IK +AVPRR
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTSSTRS--PIISFPK----CCSQSQSIKDVAVPRR 60

Query: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120
           +AMALILS+CIFSNSA A  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  NAMALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 264
           NVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 258

[Close]

BLAST of Cp4.1LG18g00110 vs. ExPASy TrEMBL
Match: A0A1S3CLM8 (psbP domain-containing protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502232 PE=4 SV=1)

HSP 1 Score: 428 bits (1101), Expect = 4.95e-150
Identity = 228/264 (86.36%), Postives = 238/264 (90.15%), Query Frame = 0


Query: 1   MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIKGLAVPRR 60
           MAVIL SFLP I TLTS  R+ IP+ SS+    PI S PK      S+SQ IK +AVPRR
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTSSTRS--PIISFPK----CCSQSQSIKDVAVPRR 60

Query: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120
           +AMALILS+CIFSNSA A  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  NAMALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 264
           NVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 258

[Close]

BLAST of Cp4.1LG18g00110 vs. TAIR 10
Match: AT4G15510.1 (Photosystem II reaction center PsbP family protein )

HSP 1 Score: 307.8 bits (787), Expect = 8.7e-84
Identity = 165/243 (67.90%), Postives = 196/243 (80.66%), Query Frame = 0


Query: 27  SSSPRWPPIDSS-PKSRFSLSSESQPIKGLAVPRRSA--MALILSSCIFSN----SALAE 86
           SS P++    S+ P+S  +++  +   +  AV RR +  M L++S  I S     +A A 
Sbjct: 46  SSGPKYQSAKSAKPESPVAINCLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANLPTAFAS 105

Query: 87  QSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSV 146
             V   EYIDTFDGYSF YP+NWIQVRGAGADIFFRDP VLDEN+SVEFSSPSSS Y S+
Sbjct: 106 TPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSL 165

Query: 147 EDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYAN 206
           EDLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSSR+ADDG+ YYQVEVNIKSYAN
Sbjct: 166 EDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYAN 225

Query: 207 NNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENELRQVMDSFRV 263
           NNELAVMPQDRV RLEW+RRYL+VLGVEN+RLY +RLQTPE VF+EEE +LR+VMDSFRV
Sbjct: 226 NNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRV 285

[Close]

BLAST of Cp4.1LG18g00110 vs. TAIR 10
Match: AT4G15510.3 (Photosystem II reaction center PsbP family protein )

HSP 1 Score: 305.8 bits (782), Expect = 3.3e-83
Identity = 155/204 (75.98%), Postives = 176/204 (86.27%), Query Frame = 0


Query: 63  MALILSSCIFSN----SALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPF 122
           M L++S  I S     +A A   V   EYIDTFDGYSF YP+NWIQVRGAGADIFFRDP 
Sbjct: 3   MGLLMSGLIVSQANLPTAFASTPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPV 62

Query: 123 VLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSS 182
           VLDEN+SVEFSSPSSS Y S+EDLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSS
Sbjct: 63  VLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSS 122

Query: 183 RMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQT 242
           R+ADDG+ YYQVEVNIKSYANNNELAVMPQDRV RLEW+RRYL+VLGVEN+RLY +RLQT
Sbjct: 123 RVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQT 182

Query: 243 PENVFVEEENELRQVMDSFRVNKV 263
           PE VF+EEE +LR+VMDSFRV K+
Sbjct: 183 PEKVFLEEEKDLRRVMDSFRVEKI 205

[Close]

BLAST of Cp4.1LG18g00110 vs. TAIR 10
Match: AT4G15510.2 (Photosystem II reaction center PsbP family protein )

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-49
Identity = 109/180 (60.56%), Postives = 133/180 (73.89%), Query Frame = 0


Query: 27  SSSPRWPPIDSS-PKSRFSLSSESQPIKGLAVPRRSA--MALILSSCIFSN----SALAE 86
           SS P++    S+ P+S  +++  +   +  AV RR +  M L++S  I S     +A A 
Sbjct: 46  SSGPKYQSAKSAKPESPVAINCLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANLPTAFAS 105

Query: 87  QSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSV 146
             V   EYIDTFDGYSF YP+NWIQVRGAGADIFFRDP VLDEN+SVEFSSPSSS Y S+
Sbjct: 106 TPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSL 165

Query: 147 EDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYAN 200
           EDLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSSR+ADDG+ YYQVEV+     N
Sbjct: 166 EDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVSQSQVPN 224

[Close]

BLAST of Cp4.1LG18g00110 vs. TAIR 10
Match: AT2G39470.2 (PsbP-like protein 2 )

HSP 1 Score: 48.5 bits (114), Expect = 9.5e-06
Identity = 37/178 (20.79%), Postives = 74/178 (41.57%), Query Frame = 0


Query: 87  YIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPE 146
           ++D  DGYS+ YP +W +      D  F+D ++  +N+ V F     +    + ++GP E
Sbjct: 83  FVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKN---DIHEVGPME 142

Query: 147 EAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKS--YANNNELA 206
           E    ++K         +     +   +       +DG+ YY  E  +++  YA  +   
Sbjct: 143 EVVYDLVKH--------KFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTS--- 202

Query: 207 VMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENELRQVMDSFRVNKV 263
                            + + V NNR Y L +   E  + + + +L+ V DS ++ ++
Sbjct: 203 ----------------FATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 230

[Close]

BLAST of Cp4.1LG18g00110 vs. TAIR 10
Match: AT2G39470.1 (PsbP-like protein 2 )

HSP 1 Score: 47.4 bits (111), Expect = 2.1e-05
Identity = 49/225 (21.78%), Postives = 93/225 (41.33%), Query Frame = 0


Query: 46  SSESQPIKGLAVPRRSAMALI-----LSSCIFSNSALAEQ-SVGLLEYIDTFDGYSFNYP 105
           SSES   KG     +   AL+     +++ I +   LAE+       ++D  DGYS+ YP
Sbjct: 44  SSESTYQKGSGNNWKRRQALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYP 103

Query: 106 KNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTE 165
            +W +      D  F+D ++  +N+ V F     +    + ++GP EE    ++K     
Sbjct: 104 SDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKN---DIHEVGPMEEVVYDLVKH---- 163

Query: 166 FMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKS--YANNNELAVMPQDRVVRLEWD 225
               +     +   +       +DG+ YY  E  +++  YA  +                
Sbjct: 164 ----KFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTS---------------- 223

Query: 226 RRYLSVLGVENNRLYELRLQTPENVFVEEENELRQVMDSFRVNKV 263
               + + V NNR Y L +   E  + + + +L+ V DS ++ ++
Sbjct: 224 ---FATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g00110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23403	1.2e-82	67.90	PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
O80634	3.0e-04	21.78	Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis t...	[more]

BLAST of Cp4.1LG18g00110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515691.1	7.95e-185	100.00	psbP domain-containing protein 1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022961486.1	1.54e-182	98.86	psbP domain-containing protein 1, chloroplastic [Cucurbita moschata] >KAG6590498...	[more]
XP_022968780.1	3.63e-181	97.73	psbP domain-containing protein 1, chloroplastic [Cucurbita maxima]	[more]
XP_038894971.1	1.11e-154	88.01	psbP domain-containing protein 1, chloroplastic [Benincasa hispida] >XP_03889497...	[more]
XP_004139523.1	2.75e-154	87.88	psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus] >KA...	[more]

BLAST of Cp4.1LG18g00110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAH2	7.45e-183	98.86	psbP domain-containing protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HY63	1.76e-181	97.73	psbP domain-containing protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DTH5	8.56e-152	85.35	psbP domain-containing protein 1, chloroplastic OS=Momordica charantia OX=3673 G...	[more]
A0A5D3E4R5	4.95e-150	86.36	PsbP domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CLM8	4.95e-150	86.36	psbP domain-containing protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]

BLAST of Cp4.1LG18g00110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15510.1	8.7e-84	67.90	Photosystem II reaction center PsbP family protein	[more]
AT4G15510.3	3.3e-83	75.98	Photosystem II reaction center PsbP family protein	[more]
AT4G15510.2	1.8e-49	60.56	Photosystem II reaction center PsbP family protein	[more]
AT2G39470.2	9.5e-06	20.79	PsbP-like protein 2	[more]
AT2G39470.1	2.1e-05	21.78	PsbP-like protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 78..259 e-value: 9.7E-53 score: 180.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..46
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 48..263
None	No IPR available	PANTHER	PTHR31407:SF15	PSBP DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC	coord: 48..263
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 84..259 e-value: 3.3E-49 score: 167.0
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 87..259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g00110.1	Cp4.1LG18g00110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048564	photosystem I assembly
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding