Cp4.1LG17g11090 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g11090
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-type domain-containing protein
Location	Cp4.1LG17: 8401074 .. 8402294 (-)
RNA-Seq Expression	Cp4.1LG17g11090
Synteny	Cp4.1LG17g11090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAAATTTTCCGGCAAATTCACTGTTCATATCTCTCGTCCGACCAACAAGGTATCCAATGCCTCTTTTTTCTTTTTTCCTTTTTTTTTTTATTTAAATTTTTAAATATATATATATATATATATATATATATATATATATATATATATTTAATTTCCTTTTCACTTTTCCAGTTGCGTATAGACATAAGCTTGCGATCTCAATTATTATTCATATATAAATATATATATGTGTGAAGATAATGTTACTCTTTTTAAGTAGAGGTCTTGAAGCTCTCAATTTCTTCTTCTTCCTCCACAGTTTTTCTCCAGATTATCAGAAATTTTCCGGGAAAATTCTGGGGAGGGTTTTCATTGTTCTTGTGTTTTGGATCTGTTTCAAGGAATTCGATGGAATTGGATTGATTTCTTTGTTTTTCCCAGAAAATTTGGGTTGTTCTTGTTGTTGAAGACTTGGGGGTGTTTTATATTTNCGCCGGAATCCACTACTCCTGTCGTCGCTGCTGCTGTTCCGGTTCTCCGGCAAATTTCACGGCGGAGTTCGACGCGGTTAAGTCAGAACATTCCGACGTCTCCCGAGGCTACAAATTCCGGCGAATCACCCGAGAACAATGACTCCGCCTCGACCATCGCCGGCACTGGCAGTCGGAGTAGCCGGAGTCTCCTCAGGCCGCAAATGTCGCGGCGCAACTCTACGAGACGCTCACTTGAACGGAGCGAGAGTTTCACTGACTTGACGGAGCCGGTGCATGAAGGCACGCGCCGCCTCTCGGCTGCACTGGCAATGGAGAGATCAATGTCCGCTAGAGAAACGGTGGCGACCCAGGAGGCAGCCGACGCAGAAACCACCGCCGACGAAGACGATGAAGAAGCAGACTCCACGGCGGTGGAGACGGCGGCGCCGGTGAGAATGTCACTAATGGATCTCTTAGAAGAGACGGACAGGCAAATGGGGTTCGAAGGGTCAAGATACAAAATAGAAGACGAAGTAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAAAGGAAGAAGAAGTCGCCGTCGTGGGCGGCGGGTCGGAACGGAAGTGCTGCGTGTGCATGGTGCGTCATAAAGGGGCGGCATTTATCCCCTGCGGTCACACCTTTTGTAGGCTCTGTTCAAGAGAACTTCTGGTCAGTAGAGGCAACTGTCCACTTTGCAATGGCTTCATTTTGGAGATTCTCGACATTTTCTAA

mRNA sequence

ATGCAGAAATTTTCCGGCAAATTCACTGTTCATATCTCTCGTCCGACCAACAAGTTTTTCTCCAGATTATCAGAAATTTTCCGGGAAAATTCTGGGGAGGGTTTTCATTGTTCTTGTGTTTTGGATCTGTTTCAAGGAATTCGATGGAATTGGATTGATTTCTTTGTTTTTCCCAGAAAATTTGGGTTGTTCTTGTTGTTGAAGACTTGGGGGTGTTTTATATTTNCGCCGGAATCCACTACTCCTGTCGTCGCTGCTGCTGTTCCGGTTCTCCGGCAAATTTCACGGCGGAGTTCGACGCGGTTAAGTCAGAACATTCCGACGTCTCCCGAGGCTACAAATTCCGGCGAATCACCCGAGAACAATGACTCCGCCTCGACCATCGCCGGCACTGGCAGTCGGAGTAGCCGGAGTCTCCTCAGGCCGCAAATGTCGCGGCGCAACTCTACGAGACGCTCACTTGAACGGAGCGAGAGTTTCACTGACTTGACGGAGCCGGTGCATGAAGGCACGCGCCGCCTCTCGGCTGCACTGGCAATGGAGAGATCAATGTCCGCTAGAGAAACGGTGGCGACCCAGGAGGCAGCCGACGCAGAAACCACCGCCGACGAAGACGATGAAGAAGCAGACTCCACGGCGGTGGAGACGGCGGCGCCGGTGAGAATGTCACTAATGGATCTCTTAGAAGAGACGGACAGGCAAATGGGGTTCGAAGGGTCAAGATACAAAATAGAAGACGAAGTAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAAAGGAAGAAGAAGTCGCCGTCGTGGGCGGCGGGTCGGAACGGAAGTGCTGCGTGTGCATGGTGCGTCATAAAGGGGCGGCATTTATCCCCTGCGGTCACACCTTTTGTAGGCTCTGTTCAAGAGAACTTCTGGTCAGTAGAGGCAACTGTCCACTTTGCAATGGCTTCATTTTGGAGATTCTCGACATTTTCTAA

Coding sequence (CDS)

ATGCAGAAATTTTCCGGCAAATTCACTGTTCATATCTCTCGTCCGACCAACAAGTTTTTCTCCAGATTATCAGAAATTTTCCGGGAAAATTCTGGGGAGGGTTTTCATTGTTCTTGTGTTTTGGATCTGTTTCAAGGAATTCGATGGAATTGGATTGATTTCTTTGTTTTTCCCAGAAAATTTGGGTTGTTCTTGTTGTTGAAGACTTGGGGGTGTTTTATATTTNCGCCGGAATCCACTACTCCTGTCGTCGCTGCTGCTGTTCCGGTTCTCCGGCAAATTTCACGGCGGAGTTCGACGCGGTTAAGTCAGAACATTCCGACGTCTCCCGAGGCTACAAATTCCGGCGAATCACCCGAGAACAATGACTCCGCCTCGACCATCGCCGGCACTGGCAGTCGGAGTAGCCGGAGTCTCCTCAGGCCGCAAATGTCGCGGCGCAACTCTACGAGACGCTCACTTGAACGGAGCGAGAGTTTCACTGACTTGACGGAGCCGGTGCATGAAGGCACGCGCCGCCTCTCGGCTGCACTGGCAATGGAGAGATCAATGTCCGCTAGAGAAACGGTGGCGACCCAGGAGGCAGCCGACGCAGAAACCACCGCCGACGAAGACGATGAAGAAGCAGACTCCACGGCGGTGGAGACGGCGGCGCCGGTGAGAATGTCACTAATGGATCTCTTAGAAGAGACGGACAGGCAAATGGGGTTCGAAGGGTCAAGATACAAAATAGAAGACGAAGTAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAAAGGAAGAAGAAGTCGCCGTCGTGGGCGGCGGGTCGGAACGGAAGTGCTGCGTGTGCATGGTGCGTCATAAAGGGGCGGCATTTATCCCCTGCGGTCACACCTTTTGTAGGCTCTGTTCAAGAGAACTTCTGGTCAGTAGAGGCAACTGTCCACTTTGCAATGGCTTCATTTTGGAGATTCTCGACATTTTCTAA

Protein sequence

MQKFSGKFTVHISRPTNKFFSRLSEIFRENSGEGFHCSCVLDLFQGIRWNWIDFFVFPRKFGLFLLLKTWGCFIFXPESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSSRSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAADAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEEEEEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGFILEILDIF

Homology

[Close]

BLAST of Cp4.1LG17g11090 vs. NCBI nr
Match: XP_023514587.1 (chromo domain-containing protein cec-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 605 bits (1561), Expect = 9.48e-218
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0


Query: 1   MQKFSGKFTVHISRPTNKFFSRLSEIFRENSGEGFHCSCVLDLFQGIRWNWIDFFVFPRK 60
           MQKFSGKFTVHISRPTNKFFSRLSEIFRENSGEGFHCSCVLDLFQGIRWNWIDFFVFPRK
Sbjct: 1   MQKFSGKFTVHISRPTNKFFSRLSEIFRENSGEGFHCSCVLDLFQGIRWNWIDFFVFPRK 60

Query: 61  FGLFLLLKTWGCFIFXPESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPE 120
           FGLFLLLKTWGCFIFXPESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPE
Sbjct: 61  FGLFLLLKTWGCFIFXPESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPE 120

Query: 121 NNDSASTIAGTGSRSSRSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAM 180
           NNDSASTIAGTGSRSSRSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAM
Sbjct: 121 NNDSASTIAGTGSRSSRSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAM 180

Query: 181 ERSMSARETVATQEAADAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGS 240
           ERSMSARETVATQEAADAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGS
Sbjct: 181 ERSMSARETVATQEAADAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGS 240

Query: 241 RYKIEDEVEEEEEEEEEEEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSR 300
           RYKIEDEVEEEEEEEEEEEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSR
Sbjct: 241 RYKIEDEVEEEEEEEEEEEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSR 300

Query: 301 ELLVSRGNCPLCNGFILEILDIF 323
           ELLVSRGNCPLCNGFILEILDIF
Sbjct: 301 ELLVSRGNCPLCNGFILEILDIF 323

[Close]

BLAST of Cp4.1LG17g11090 vs. NCBI nr
Match: XP_023522866.1 (chromo domain-containing protein cec-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446 bits (1148), Expect = 2.84e-154
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 77  PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSS 136
           PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSS
Sbjct: 115 PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSS 174

Query: 137 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA 196
           RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA
Sbjct: 175 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA 234

Query: 197 DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 256
           DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE
Sbjct: 235 DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 294

Query: 257 EEEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGFI 316
           EEEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGFI
Sbjct: 295 EEEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGFI 354

Query: 317 LEILDIF 323
           LEILDIF
Sbjct: 355 LEILDIF 361

[Close]

BLAST of Cp4.1LG17g11090 vs. NCBI nr
Match: XP_022960262.1 (chromo domain-containing protein cec-1-like [Cucurbita moschata] >KAG7025412.1 hypothetical protein SDJN02_11907, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 432 bits (1111), Expect = 1.24e-148
Identity = 243/248 (97.98%), Postives = 244/248 (98.39%), Query Frame = 0


Query: 77  PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSS 136
           PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENN+S STIA TGSRSS
Sbjct: 115 PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNNSDSTIADTGSRSS 174

Query: 137 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA 196
           RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTR LSAALAMERSMSARETVATQEAA
Sbjct: 175 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRLLSAALAMERSMSARETVATQEAA 234

Query: 197 DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 256
           DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE
Sbjct: 235 DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 294

Query: 257 EEE-KEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF 316
           EEE KEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF
Sbjct: 295 EEEEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF 354

Query: 317 ILEILDIF 323
           ILEILDIF
Sbjct: 355 ILEILDIF 362

[Close]

BLAST of Cp4.1LG17g11090 vs. NCBI nr
Match: XP_023004831.1 (nucleolin-like [Cucurbita maxima])

HSP 1 Score: 432 bits (1110), Expect = 1.76e-148
Identity = 241/248 (97.18%), Postives = 246/248 (99.19%), Query Frame = 0


Query: 77  PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSS 136
           PESTTPVVAAAVPVLRQISRR+STRLSQNIPTSPEATNSGESPENN+S STIAGTGSRSS
Sbjct: 115 PESTTPVVAAAVPVLRQISRRNSTRLSQNIPTSPEATNSGESPENNNSDSTIAGTGSRSS 174

Query: 137 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA 196
           RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA
Sbjct: 175 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA 234

Query: 197 DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 256
           DAETTA+EDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE
Sbjct: 235 DAETTANEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 294

Query: 257 E-EEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF 316
           E EEKE+EVAVVGGGSE+KCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF
Sbjct: 295 EDEEKEDEVAVVGGGSEQKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF 354

Query: 317 ILEILDIF 323
           ILEILDIF
Sbjct: 355 ILEILDIF 362

[Close]

BLAST of Cp4.1LG17g11090 vs. NCBI nr
Match: KAG6593002.1 (hypothetical protein SDJN03_12478, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 429 bits (1103), Expect = 1.29e-147
Identity = 242/248 (97.58%), Postives = 243/248 (97.98%), Query Frame = 0


Query: 77  PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSS 136
           PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENN+S STIA TGSRSS
Sbjct: 102 PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNNSDSTIADTGSRSS 161

Query: 137 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA 196
           RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTR LSAALAMERSMSARETVATQEAA
Sbjct: 162 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRLLSAALAMERSMSARETVATQEAA 221

Query: 197 DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 256
           DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE
Sbjct: 222 DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 281

Query: 257 EEE-KEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF 316
           EEE KEEEVAVVGG SERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF
Sbjct: 282 EEEEKEEEVAVVGGWSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF 341

Query: 317 ILEILDIF 323
           ILEILDIF
Sbjct: 342 ILEILDIF 349

[Close]

BLAST of Cp4.1LG17g11090 vs. ExPASy TrEMBL
Match: A0A6J1H6Y3 (chromo domain-containing protein cec-1-like OS=Cucurbita moschata OX=3662 GN=LOC111461059 PE=4 SV=1)

HSP 1 Score: 432 bits (1111), Expect = 5.99e-149
Identity = 243/248 (97.98%), Postives = 244/248 (98.39%), Query Frame = 0


Query: 77  PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSS 136
           PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENN+S STIA TGSRSS
Sbjct: 115 PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNNSDSTIADTGSRSS 174

Query: 137 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA 196
           RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTR LSAALAMERSMSARETVATQEAA
Sbjct: 175 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRLLSAALAMERSMSARETVATQEAA 234

Query: 197 DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 256
           DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE
Sbjct: 235 DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 294

Query: 257 EEE-KEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF 316
           EEE KEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF
Sbjct: 295 EEEEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF 354

Query: 317 ILEILDIF 323
           ILEILDIF
Sbjct: 355 ILEILDIF 362

[Close]

BLAST of Cp4.1LG17g11090 vs. ExPASy TrEMBL
Match: A0A6J1KT79 (nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111498015 PE=4 SV=1)

HSP 1 Score: 432 bits (1110), Expect = 8.50e-149
Identity = 241/248 (97.18%), Postives = 246/248 (99.19%), Query Frame = 0


Query: 77  PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSS 136
           PESTTPVVAAAVPVLRQISRR+STRLSQNIPTSPEATNSGESPENN+S STIAGTGSRSS
Sbjct: 115 PESTTPVVAAAVPVLRQISRRNSTRLSQNIPTSPEATNSGESPENNNSDSTIAGTGSRSS 174

Query: 137 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA 196
           RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA
Sbjct: 175 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA 234

Query: 197 DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 256
           DAETTA+EDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE
Sbjct: 235 DAETTANEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 294

Query: 257 E-EEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF 316
           E EEKE+EVAVVGGGSE+KCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF
Sbjct: 295 EDEEKEDEVAVVGGGSEQKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGF 354

Query: 317 ILEILDIF 323
           ILEILDIF
Sbjct: 355 ILEILDIF 362

[Close]

BLAST of Cp4.1LG17g11090 vs. ExPASy TrEMBL
Match: A0A5D3E4J3 (Nucleolin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00730 PE=4 SV=1)

HSP 1 Score: 312 bits (800), Expect = 7.72e-102
Identity = 183/252 (72.62%), Postives = 199/252 (78.97%), Query Frame = 0


Query: 77  PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSS 136
           PE TT    +A P LRQISRR+STR + ++P S EATNS  SP+NN +A+   G G    
Sbjct: 114 PEPTTTAAVSAAPSLRQISRRNSTRFNPSVPPSSEATNSDASPDNNSAAAASGGGG---- 173

Query: 137 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA 196
           RSLLRPQMSR NSTR S+ERSESFTDLTEP  EGTRRLSAALA ERSMSARE VA QEAA
Sbjct: 174 RSLLRPQMSRHNSTRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAA 233

Query: 197 DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 256
           DAE  AD +++E +  A  T AP+RMSLMDLLEETDRQMGFEGS Y+IEDE   EEEEEE
Sbjct: 234 DAEAIADVEEQEEEQEAESTPAPMRMSLMDLLEETDRQMGFEGSTYRIEDE---EEEEEE 293

Query: 257 EEEKEEEVAVV-----GGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPL 316
           EEE E EV  V     GGG+ER CCVCMVRHKGAAFIPCGHTFCRLCSREL VSRGNCPL
Sbjct: 294 EEEIENEVTTVCGGGGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPL 353

Query: 317 CNGFILEILDIF 323
           CNGFILEILDIF
Sbjct: 354 CNGFILEILDIF 358

[Close]

BLAST of Cp4.1LG17g11090 vs. ExPASy TrEMBL
Match: A0A1S3C6E1 (nucleolin-like OS=Cucumis melo OX=3656 GN=LOC103497559 PE=4 SV=1)

HSP 1 Score: 310 bits (795), Expect = 4.40e-101
Identity = 184/252 (73.02%), Postives = 200/252 (79.37%), Query Frame = 0


Query: 77  PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSS 136
           PE TT    +A P LRQISRR+STR + ++P S EATNS  SP+NN SA+  +G G RS 
Sbjct: 114 PEPTTTAAVSAAPSLRQISRRNSTRFNPSVPPSSEATNSDASPDNN-SAAAASGAGGRS- 173

Query: 137 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA 196
             LLRPQMSR NSTR S+ERSESFTDLTEP  EGTRRLSAALA ERSMSARE VA QEAA
Sbjct: 174 --LLRPQMSRHNSTRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAA 233

Query: 197 DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 256
           DAE  AD +++E +  A  T AP+RMSLMDLLEETDRQMGFEGS Y+IEDE   EEEEEE
Sbjct: 234 DAEAIADVEEQEEEQEAESTPAPMRMSLMDLLEETDRQMGFEGSTYRIEDE---EEEEEE 293

Query: 257 EEEKEEEVAVV-----GGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPL 316
           EEE E EV  V     GGG+ER CCVCMVRHKGAAFIPCGHTFCRLCSREL VSRGNCPL
Sbjct: 294 EEEIENEVTTVCGGGGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPL 353

Query: 317 CNGFILEILDIF 323
           CNGFILEILDIF
Sbjct: 354 CNGFILEILDIF 358

[Close]

BLAST of Cp4.1LG17g11090 vs. ExPASy TrEMBL
Match: A0A0A0K6R9 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G342770 PE=4 SV=1)

HSP 1 Score: 298 bits (764), Expect = 1.94e-96
Identity = 177/251 (70.52%), Postives = 195/251 (77.69%), Query Frame = 0


Query: 77  PESTTPVVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSS 136
           PE TT    +A P LRQISRR+STRL+ ++  S EATNS  SP+NN SA+  +G+G RS 
Sbjct: 114 PEPTTTAAVSAAPSLRQISRRNSTRLNPSVQPSSEATNSNASPDNN-SAAAASGSGGRS- 173

Query: 137 RSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAA 196
             LLRPQMSR NSTR S+ERSESFTDLTEP  EGTRRLSAALA ERSMSARE V  QEAA
Sbjct: 174 --LLRPQMSRHNSTRFSVERSESFTDLTEPTREGTRRLSAALAEERSMSAREAVTAQEAA 233

Query: 197 DAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEE 256
           DAE T DE++++ +  A  T APVRMSLMDLLEETDRQMGFEGS Y+IEDE     +EEE
Sbjct: 234 DAEATVDEEEQQQEQVAESTPAPVRMSLMDLLEETDRQMGFEGSTYRIEDE-----DEEE 293

Query: 257 EEEKEEEVAVVGGG----SERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLC 316
           E E E    V GGG    +E  CCVCMVRHKGAAFIPCGHTFCRLCSREL VSRGNCPLC
Sbjct: 294 EIENEVSTTVCGGGGSGGTEPHCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLC 353

Query: 317 NGFILEILDIF 323
           NGFILEILDIF
Sbjct: 354 NGFILEILDIF 355

[Close]

BLAST of Cp4.1LG17g11090 vs. TAIR 10
Match: AT3G07120.1 (RING/U-box superfamily protein )

HSP 1 Score: 146.7 bits (369), Expect = 3.1e-35
Identity = 102/224 (45.54%), Postives = 134/224 (59.82%), Query Frame = 0


Query: 115 SGESPENNDSASTIA-GTGSRSSRSLLRPQMSRRNSTRRSLERSESFTDLTEPVHEGTRR 174
           S ++P+++   S +  G  SRS     +PQ+SR +S R   E  E         +   R 
Sbjct: 150 SSKNPDDSPDISVLEDGPPSRS----FKPQLSRHDSVRDHSEGEE---------NNRRRH 209

Query: 175 LSAALAMERSMSARETVATQEAADAETTA-------DEDDEEADSTAVE-------TAAP 234
                  ER MSARE VA QEAA+AE  A       D+DDEE DS   E       +   
Sbjct: 210 PIVTFVEERQMSAREAVAAQEAAEAEAAAAGGSEDEDDDDEEDDSGETEEMKSSSASEPK 269

Query: 235 VRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEEEEEKEEEVAVVGGGSERKCCVCM 294
             MSLMDLLEETDRQMG  GSRY ++++ E EE+EE+E  +EE  +  GG  E  CCVCM
Sbjct: 270 QTMSLMDLLEETDRQMGLTGSRYAMDEDEEYEEDEEDENNEEEGDSHGGGEGELSCCVCM 329

Query: 295 VRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGFILEILDIF 324
           V+ KGA+F PCGHTFC+LCS+EL+  +G+CP+C+ F+LE L+IF
Sbjct: 330 VKIKGASFTPCGHTFCKLCSKELMAQKGHCPVCSSFVLEFLEIF 360

[Close]

BLAST of Cp4.1LG17g11090 vs. TAIR 10
Match: AT3G25030.1 (RING/U-box superfamily protein )

HSP 1 Score: 115.5 bits (288), Expect = 7.7e-26
Identity = 91/194 (46.91%), Postives = 106/194 (54.64%), Query Frame = 0


Query: 133 SRSSRSLLRPQMSRRNSTRR---SLERSESFTDLTEPVHEGTRRLSAALAMERSMSARET 192
           S S  SL  P  +R N + +    L  S + T+    V EG  RL A LA ER++SARE 
Sbjct: 95  SNSIPSLDTPIPNRDNVSHQLGFLLSNSGNVTEEASSV-EGRIRLGAVLAEERALSARE- 154

Query: 193 VATQEAADAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVE 252
                    ET A+ + E           P RMSLM+LLEE + QM F            
Sbjct: 155 --------EETPAEREVE-----------PARMSLMELLEENEGQMSF------------ 214

Query: 253 EEEEEEEEEEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNC 312
                  + E EEEVA V   +E  CCVCMVR KGAAFIPCGHTFCRLCSREL V RGNC
Sbjct: 215 ----VSVDGEAEEEVAAV-TAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNC 250

Query: 313 PLCNGFILEILDIF 324
           PLCN  ILE+LD+F
Sbjct: 275 PLCNTTILEVLDLF 250

[Close]

BLAST of Cp4.1LG17g11090 vs. TAIR 10
Match: AT3G25030.2 (RING/U-box superfamily protein )

HSP 1 Score: 115.5 bits (288), Expect = 7.7e-26
Identity = 91/194 (46.91%), Postives = 106/194 (54.64%), Query Frame = 0


Query: 133 SRSSRSLLRPQMSRRNSTRR---SLERSESFTDLTEPVHEGTRRLSAALAMERSMSARET 192
           S S  SL  P  +R N + +    L  S + T+    V EG  RL A LA ER++SARE 
Sbjct: 95  SNSIPSLDTPIPNRDNVSHQLGFLLSNSGNVTEEASSV-EGRIRLGAVLAEERALSARE- 154

Query: 193 VATQEAADAETTADEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVE 252
                    ET A+ + E           P RMSLM+LLEE + QM F            
Sbjct: 155 --------EETPAEREVE-----------PARMSLMELLEENEGQMSF------------ 214

Query: 253 EEEEEEEEEEKEEEVAVVGGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNC 312
                  + E EEEVA V   +E  CCVCMVR KGAAFIPCGHTFCRLCSREL V RGNC
Sbjct: 215 ----VSVDGEAEEEVAAV-TAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNC 250

Query: 313 PLCNGFILEILDIF 324
           PLCN  ILE+LD+F
Sbjct: 275 PLCNTTILEVLDLF 250

[Close]

BLAST of Cp4.1LG17g11090 vs. TAIR 10
Match: AT4G13100.1 (RING/U-box superfamily protein )

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-23
Identity = 62/109 (56.88%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 215 ETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEEEEEKEEEVAVVGGGSERK 274
           E   P RMSLM+LLE+ D      G  Y++    E E E  +  +   E   V G +E  
Sbjct: 157 EEMQPPRMSLMELLEDND------GHMYELSARDEVEVEGRDGCDGGGEAVAVTGAAELG 216

Query: 275 CCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGFILEILDIF 324
           CCVCMVR KGAAFIPCGHTFCRLCSREL V RGNCPLCN  IL++LDIF
Sbjct: 217 CCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF 259

[Close]

BLAST of Cp4.1LG17g11090 vs. TAIR 10
Match: AT4G13100.4 (RING/U-box superfamily protein )

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-23
Identity = 62/109 (56.88%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 215 ETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEEEEEKEEEVAVVGGGSERK 274
           E   P RMSLM+LLE+ D      G  Y++    E E E  +  +   E   V G +E  
Sbjct: 154 EEMQPPRMSLMELLEDND------GHMYELSARDEVEVEGRDGCDGGGEAVAVTGAAELG 213

Query: 275 CCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGFILEILDIF 324
           CCVCMVR KGAAFIPCGHTFCRLCSREL V RGNCPLCN  IL++LDIF
Sbjct: 214 CCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF 256

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g11090 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g11090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514587.1	9.48e-218	100.00	chromo domain-containing protein cec-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023522866.1	2.84e-154	100.00	chromo domain-containing protein cec-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960262.1	1.24e-148	97.98	chromo domain-containing protein cec-1-like [Cucurbita moschata] >KAG7025412.1 h...	[more]
XP_023004831.1	1.76e-148	97.18	nucleolin-like [Cucurbita maxima]	[more]
KAG6593002.1	1.29e-147	97.58	hypothetical protein SDJN03_12478, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG17g11090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6Y3	5.99e-149	97.98	chromo domain-containing protein cec-1-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KT79	8.50e-149	97.18	nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111498015 PE=4 SV=1	[more]
A0A5D3E4J3	7.72e-102	72.62	Nucleolin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00730...	[more]
A0A1S3C6E1	4.40e-101	73.02	nucleolin-like OS=Cucumis melo OX=3656 GN=LOC103497559 PE=4 SV=1	[more]
A0A0A0K6R9	1.94e-96	70.52	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G342770 P...	[more]

BLAST of Cp4.1LG17g11090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07120.1	3.1e-35	45.54	RING/U-box superfamily protein	[more]
AT3G25030.1	7.7e-26	46.91	RING/U-box superfamily protein	[more]
AT3G25030.2	7.7e-26	46.91	RING/U-box superfamily protein	[more]
AT4G13100.1	2.1e-23	56.88	RING/U-box superfamily protein	[more]
AT4G13100.4	2.1e-23	56.88	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 240..264
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 271..315 e-value: 2.3E-10 score: 40.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..264
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..262
None	No IPR available	PANTHER	PTHR46629:SF13	OS01G0917900 PROTEIN	coord: 88..322
None	No IPR available	PANTHER	PTHR46629	OS01G0917900 PROTEIN	coord: 88..322
None	No IPR available	CDD	cd16449	RING-HC	coord: 274..311 e-value: 3.42659E-9 score: 49.7733
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 273..318
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 274..311 e-value: 1.7E-4 score: 30.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 274..312 score: 11.102496
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 241..322 e-value: 3.6E-13 score: 50.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g11090.1	Cp4.1LG17g11090.1	mRNA