Cp4.1LG17g10970 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g10970
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG17: 8262372 .. 8268061 (+)
RNA-Seq ExpressionCp4.1LG17g10970
SyntenyCp4.1LG17g10970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGTACTATAAATAGCATAGCATATTACAAGAACAGGTATTGCAAAACTCAACTTAATATCTGAGAGATAGTAACGTAAAGAGAAAGAGGCAACAATGGTGCAACTTCCGAAGTCTGCCGTGCTCAAATCAAAGTACAACCACAACTATTTGCGCTTCGTGAATGAAGCGTGTTCACCGGTGCGTACATTCATGCAGTACTCGGGGAAGGAGATTCTTAGTCCATTTACTCAGTTTGAGTTCGAGCAAGCTAAATGTGACCCATCTTTATACCATATAAAATGTTGTTACAACAACAAGTATTGGGTTAGTTTGGCTCGTGACCATCATTTTATTGTAGCGGGGGCTGACCAGAAAGATGAAGACAAATCCAAATGGACATGCACTCTATTTCGTCCGGTTTATGACAGTTGTCATCAATCGTTTCGGTTTTGTCATGTCCATCTTGGTTTAAATGTAGTCTTGTGGAGGGTTGGTCCCCCTTATGGAGAATGCTTACGTGCACAGTGGTCGGTTCCTGATAAAGATCTCTGCGATCTCAGTGTAGTTATTGACTCGGAATCACTGTGGTCATTACCTAAATTTATTGCCTTTAGAGGTGATAATGGTTCTTATCTCAGTGCTCGGTCAATTGACAATCATTCATATCTACAATTTTCATCCAACAATATTGACGATCCTACCGTTCAGATGGAGACCTTCATCACAAATGATGGAAAAATTCGTGTGAAGTCAGCTCACTTCCAAAAATTTTGGAGACGTGACACTTCTAATTGGATTTTCGCTGACTCTTGTGAGACCACTGCTCAAAATCTCGATACTTTGTTTTCGCCAACTAAACTTGCGTCCCACATTGTTGCTCTACGTAACTTGGGTAATAACAACTTTGTTAAAAGGTACACTTCAGCGAGCAAAGTAAGTTGTCTCATGGCAGCCGTGAAAAATATCGATGAATTTTCACACTTACAAATGGTTGAGCTTGTTCTTTCACGACAAATCAACAATGTCGTGTTTTATCTTTCTGATGCTAGAATCCGTGATCAAGTTGCTATCGTATTAGCAACTGCAGAAGCTGCAAATAGTTCGAACGTACCCAACACTGTCTGCTTGATTTTCTCGCATACAAACACCAGATCTAGCACATGGGATTCTTCTGTTTCTACGAAATTGGACGTCAAGACAATAATCGAAACAGGAGTTCCCCTCATTGTCGATGGAAAGACAATCGAAACATCGTCGACTAAGTTCGTTGGAGAATACAAATGGGGAGAAACTATAACAACATCCAAGATACAAGAGATCAAATATGAGGTAACTATACCACCGATGAGCAGTATTGTCGTTACCTTAAATGCAACTAAGGGCTCATGTGACGTTCCATTCTCATACAAACAAGTCGACATCCTCAAAGGTGGTAAAAAAGTTGAATATTGTTTGGACGATGGCGTTTACCATGGCACCAACTACTATAACCTTAAATACGAAACTAAAACGAAACCAATTTGTGGATGCCCAAACTAATAACAACGGTTCGACCTGAATAAAAATAACTATCTTTCAAATGTGTGCGCGTTTTCGGTTGTATTATGTAAAAGAATAAAATTATTGTAGTTTTGTCTACAATATCTATAAAGTTACGTGTATCATTATTTTCAATATTATCCGACCTTGTTTTTAGTTATTATATTGCAACAACAATAATAATTATAATAAAAAAAAAGGGTGTCACGAGGTGTGTCGGTTGTGGCCGCATGTCGGATGTTTCGATCATGTTTGTCTAGGGCATGTTGTCCATAGCTGCATGCCCGACCCAAACCCCTTTTACTGCTTTCATGTGTAGTTAGGTCTTTATTATCCATGTCATGTCAATACGGGAGGTGTATAACCATTTACCTTTTCTACTCGAGTTATATGCTATCAAAGTTGTAATCGTTGCTGATTCGCTTTTAGCCTGTAATATTGATTTATTTCAAATCATTTTCAACGCGTTCCTCGTTCACGTTTTATAAAACATTTTCTGTCAAACGTGACTCGAGATTCGATCATACTGACTTGTTCACAAACTCAAAACTCACGACTTTTCGAAAAGGGTTCGATGAGGTATCCTTAGCAAAACGACATGTGGAATCAAACTAATTTTTTATTCTTCCTAAGAATATTCATGAATAAAAGAAAATGAGAATATTTTCACTTTTTCGTAGAAAGGGATAATGATACGCTTCAGGTAAGAAAATAAGTTGTCTCATGACGGCCGTGTAAAATATTGATGAGCTTTCTCGTTGGACAAATGATTGAGCTTGTTCTTTCACCATAATTCAACAATGTCGTGTTTCGTCTCTCTGATACGGGAATTCGTGATCAAGTTATTATCATACCAGCGAATACACAAACGGAAAATAATTGAACGGGAAATACTTGTTCGACTTTCTTATATATAAACACCAAATCGAGCACATGAGCTTCTTCATTCTCAACGAATCCAATAAGAAACCGGTTCAATTGAACTTGTCAACTTCATCATCTTTATTGGTTCTAAGCAACTGCACCTTTTTTTTTGTTGCCTTTATTCCGTGATTTTAATGCAACAAGAATCATAAAGAACGATCAGGTCGAGAAAAATATCATGACAATTTAATATTATAAATAAAATATAACTTACGAGACTTTAAGATATAAAGTCTAAATACTTCAAATTTGGACCTTATAACAAAAATAGATGCCCGTCTTTGCCCGTCTTTTTCACTTTTAATATAATAAAGATAAGGACAAGATAAAAATATGCGTAAAGTGAGATGCGGAATCTGATCAATACATAGCAAAACGACATTTTTTTACCTTTTCTTTTTGTAGAAAAGATAACGAGAATATTTACGTGCAATTAGTAAAATGTATGCTTCTCGAGCTATAAATAGCATAGCACGTAACAAGGAAAAGTATAGCAACTCAACTTAGTGTCGACAAAGAGACAAGGATGGTGCAATTTCCGAGGTATGTAGTCCTCAAATCGAAGTATAATCACAACTACTTACGCTATTTGGATGGAACTTGTTCACGGGTGCATAAATTTCTACGGTACTCGGGAAAGGAGATTCTTACCCCATACACAAAGTTTGAGTTCGAACAAGCTAAATGTGACCCGTCGTTATTCCACATAAGGTGTTGTTACAATAACAAGTACTGGACTAGTTGGGCTTGTGACAAGCATTTTATTGTAGCGGGAGCTGACAAGAAAGAAGAAGACAAATCGAAATGGTCATGCACACTATTTCGTCCCGTTTATGACAGTTCTCATCAATCATTTCGATTTTGTCACGTTGGTCTTGGTTTCAACGTAGTCATATGGAGAGTTGGTCCTCCTTATGGAGGATGCTTACGTGCACAATGGTCCGTTCCTGATAGAGATCTCTGCGATCTCAGTATAGTTATTGATTGGGATTCACTGTGGTTATTGCCTAAATTTATTGCTTTTAAAGGTGATAATGGTTCTTATCTTAGTGCTCGGTCAATCGATTATCAACCATATCTACAATTTTCGTCCAAAAGTATCGACGATCCTAGCATTCAGATGGAGACATTCATTACAAACGATGGAAAAATTCGCATAAAATCAATTTTCTTCCAAAATTTTTGGAAACGCGGTACTTCTAATTGGATTTTTGCTGATTCTACTGATGATAGCTCGGAAAATCTCGATACTTTATTTTCGCCGACTCAGGTGTCTTCCACCGTTGTTGCTTTACGTAACTTAGGTAATGGCAACTTTGTCAAACGATACAGTCTTGCTAGCAAAGCAAACTTTCTCAACGCTGGAGCCAAAGAAATTGATAGCTTTTCACACTTACAAATGGTCGAGCCTATTCTTTCAAGAGAAATCAGCAACGTAATGTTTTATCTCTCCGAGGCTAGAATCTATGATGAAGCTGTTATCGTGTTAGCAACTAAAGAAGTCACAAATAATCTCCACATACCAAGCACTCTATGCATCCCGTTCTCATATACAAACACCAGATATAGCAAATGGGCTTCTTCAATCTCAATGAAATTAGATGTCAAGACAACAATTGACTCGGGAGTTCCCGTCATTGTTAACAGAAAGAAGATCGAGACATTATCAACTAAGTTTTCAGGAGAATACAAATGGGGAGAAACCATAACAATATCAAAGACAAAAGAGATAAAATACGAGGTAACTGTACCACCAACGAGCACGAGTATCGTTACCTTATATGCAACTAAGGGCTCGTGTGACGTTCCGTTCTCATACAAACAAGTTGACATCCTCATCGGCGGGAAAGAAGTTGAATCTTATTTAGCTGACGGTATTTACCATGGCACCAACTACTACAATCTTAAATATGAAGTTAAACCTAAACAAAACTGTGGATGTCCTAACGAAGACTGATACTATCATGATAATATAGACTCGAGGTAAAAGTGATGTCTTTAGATGTCCGTGTATGACTTACGTTGTAATATCTAAAAGAATAAAATTATTACCGTTTTCATCTACACGATCCTAATTACATTATTTAAGGACTATATGGCCAAAGATGAATTTTTGAAGAAAAGGATTAGACACATAATTAAACGCTTAATTATTTTAACAAGTACTGACTAGTTGGGCTAGTGACAAACATTTTATTGTAGCGGGAGCTAACGAGAAAGAAGAAGACAAATTCAAATGGTTGTGCACACTATTTCGTCCCGTTTATGACAGTTCTCATCAATCATTTTGATTTTGTCACGTTGGTCTTGGTTTTAACGTAGTCGTATGGCGAGTTGATCCTCTTTATGGAGGATGTTTATGTGCACAATGGTCGATTCCTAATAGAGATCTCTACGATCTCAGTATAGTTATTAGTTGGGAATTACTGTGGTCATTACCTAAATTTATTGCTTTTAAAGGTGATAATGGTTCTTATCTTAGTGTTCGCTCAATTGATAATCGTCCATATCTACAATTTTCATCCAACAATATTGACGATCCTACCATTCAGATGAAGACTTTCATCATAAATGATGGAAAAATTTGCATCAAGTCAGTTTACTTCCAGAAATTTTGGAGACGTGACGCTTCTAATTGGATTTTTGCTGAATATTGTGAGACGACGACTCAAAATCTCGATACTTTATTTTTGCCCACTAAAGTTTCACCCGACGTTGTTGCTCTTTGTAACTTGGGTAATGACAACTTTGTTAAAAGATATACTATAGGTAGCAAAATAAGTTATCTCATGGAAGCCATGAAAAATATCGATGAATTTTCACGCTTACATATGGTTGAACTTGTTCTTTCACGACAAATCAACAATGTCGTATTTTGTCTTTTTGATGCTAGGATCCATGATCAAGTTGTTATCGTATTAGCAACTACAAAAGTTGCAAATAATTCGAACGTAAACAATACTGAATGTGTGACTTTCTCATACACAAACAATGGATCGAGCACATGGGCTTCTTCAATCTCAACACAATTGGACGTCAAGACAACGATCGAAGCAAATATTCCGCTCATTGTTGACAATGGATCGAGCATATAGGCTTCTTCAATCTTAACAAAATTGGACGTCAAGACAACGATCGAAGCAAATATTCCGCTCATTGTTGATGGAAAGATGATTGAAACATTGTCAGCTAAGTTTGTAAGACTCAAGAGATGGTATATGAGGTTACTATACCACCATTGA

mRNA sequence

ATGCTGAAAGAGGCAACAATGGTGCAACTTCCGAAGTCTGCCGTGCTCAAATCAAAGTACAACCACAACTATTTGCGCTTCGTGAATGAAGCGTGTTCACCGGCTTCTTCAATCTTAACAAAATTGGACGTCAAGACAACGATCGAAGCAAATATTCCGCTCATTGTTGATGGAAAGATGATTGAAACATTGTCAGCTAAGTTTGTAAGACTCAAGAGATGGTATATGAGGTTACTATACCACCATTGA

Coding sequence (CDS)

ATGCTGAAAGAGGCAACAATGGTGCAACTTCCGAAGTCTGCCGTGCTCAAATCAAAGTACAACCACAACTATTTGCGCTTCGTGAATGAAGCGTGTTCACCGGCTTCTTCAATCTTAACAAAATTGGACGTCAAGACAACGATCGAAGCAAATATTCCGCTCATTGTTGATGGAAAGATGATTGAAACATTGTCAGCTAAGTTTGTAAGACTCAAGAGATGGTATATGAGGTTACTATACCACCATTGA

Protein sequence

MLKEATMVQLPKSAVLKSKYNHNYLRFVNEACSPASSILTKLDVKTTIEANIPLIVDGKMIETLSAKFVRLKRWYMRLLYHH
Homology
[Close]
BLAST of Cp4.1LG17g10970 vs. NCBI nr
Match: KAG6592983.1 (hypothetical protein SDJN03_12459, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 5.13e-09
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 7  MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
          MVQLPKSAVLKSKYNHNYLRFVNEACSP  + +
Sbjct: 1  MVQLPKSAVLKSKYNHNYLRFVNEACSPVRTFM 33

[Close]
BLAST of Cp4.1LG17g10970 vs. NCBI nr
Match: XP_023514586.1 (uncharacterized protein LOC111778837 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.4 bits (150), Expect = 5.13e-09
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 7  MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
          MVQLPKSAVLKSKYNHNYLRFVNEACSP  + +
Sbjct: 1  MVQLPKSAVLKSKYNHNYLRFVNEACSPVRTFM 33

[Close]
BLAST of Cp4.1LG17g10970 vs. NCBI nr
Match: XP_022960506.1 (uncharacterized protein LOC111461222 [Cucurbita moschata])

HSP 1 Score: 60.8 bits (146), Expect = 7.75e-09
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 7  MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
          MVQLPKS VLKSKYNHNYLRFVNEACSP  + +
Sbjct: 1  MVQLPKSVVLKSKYNHNYLRFVNEACSPVRTFM 33

[Close]
BLAST of Cp4.1LG17g10970 vs. NCBI nr
Match: KAG6592984.1 (hypothetical protein SDJN03_12460, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 2.23e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 35  ASSILTKLDVKTTIEANIPLIVDGKMIETLSAKF 68
           ASS+ TKLDVKT IEANIPLIVDGKMIET SAKF
Sbjct: 679 ASSVSTKLDVKTMIEANIPLIVDGKMIETSSAKF 712

[Close]
BLAST of Cp4.1LG17g10970 vs. NCBI nr
Match: XP_022960406.1 (uncharacterized protein LOC111461141 [Cucurbita moschata])

HSP 1 Score: 52.8 bits (125), Expect = 1.27e-05
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 7  MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
          MVQLP+ A LKSKYN NYLR++NE CSP  S L
Sbjct: 1  MVQLPRFAALKSKYNDNYLRYINETCSPVRSFL 33

[Close]
BLAST of Cp4.1LG17g10970 vs. ExPASy TrEMBL
Match: A0A6J1H7S9 (uncharacterized protein LOC111461222 OS=Cucurbita moschata OX=3662 GN=LOC111461222 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.75e-09
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 7  MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
          MVQLPKS VLKSKYNHNYLRFVNEACSP  + +
Sbjct: 1  MVQLPKSVVLKSKYNHNYLRFVNEACSPVRTFM 33

[Close]
BLAST of Cp4.1LG17g10970 vs. ExPASy TrEMBL
Match: A0A6J1H7H4 (uncharacterized protein LOC111461141 OS=Cucurbita moschata OX=3662 GN=LOC111461141 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.13e-06
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 7  MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
          MVQLP+ A LKSKYN NYLR++NE CSP  S L
Sbjct: 1  MVQLPRFAALKSKYNDNYLRYINETCSPVRSFL 33

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g10970 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g10970 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6592983.15.13e-0984.85hypothetical protein SDJN03_12459, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023514586.15.13e-0984.85uncharacterized protein LOC111778837 [Cucurbita pepo subsp. pepo][more]
XP_022960506.17.75e-0981.82uncharacterized protein LOC111461222 [Cucurbita moschata][more]
KAG6592984.12.23e-0788.24hypothetical protein SDJN03_12460, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022960406.11.27e-0569.70uncharacterized protein LOC111461141 [Cucurbita moschata][more]
BLAST of Cp4.1LG17g10970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H7S93.75e-0981.82uncharacterized protein LOC111461222 OS=Cucurbita moschata OX=3662 GN=LOC1114612... [more]
A0A6J1H7H46.13e-0669.70uncharacterized protein LOC111461141 OS=Cucurbita moschata OX=3662 GN=LOC1114611... [more]
BLAST of Cp4.1LG17g10970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g10970.1Cp4.1LG17g10970.1mRNA