Cp4.1LG17g09870 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g09870
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	acanthoscurrin-1-like
Location	Cp4.1LG17: 7458839 .. 7459225 (-)
RNA-Seq Expression	Cp4.1LG17g09870
Synteny	Cp4.1LG17g09870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAATTGTTTATGGCTATGCTCCTGGCTCTTCTAGCCACTCACGCCCTAGCTAGACCCACGCCCAAGGACGCCACCTTCACTGACCAAAAGAACTTCCTAACATACGGAGGACTTGGTGGCTACTCCGGCATCGGTAGCAACGGCCTCCCATTTGGCGGCCTTGGCGGTGCCGTTGGTGGAACTGGCCCTGGTGGTATTGGTGGAGGAATTGGTGGACTCGGTGGATTTGGAGGCGGTGGAGGCGCTGGAGGCGCTGGTCTCGGTGGCGGTGGCCTTGGAGGAACCATTGGAGGTGGTAACCTCGGTGGCGGTCTCGGTGGTACAGTTGGCGGCGGTCTCGGCGGTGGTGTTGGTGGTGGTGGTGGCTCTGGGCTTCCATGA

mRNA sequence

ATGGCCAAATTGTTTATGGCTATGCTCCTGGCTCTTCTAGCCACTCACGCCCTAGCTAGACCCACGCCCAAGGACGCCACCTTCACTGACCAAAAGAACTTCCTAACATACGGAGGACTTGGTGGCTACTCCGGCATCGGTAGCAACGGCCTCCCATTTGGCGGCCTTGGCGGTGCCGTTGGTGGAACTGGCCCTGGTGGTATTGGTGGAGGAATTGGTGGACTCGGTGGATTTGGAGGCGGTGGAGGCGCTGGAGGCGCTGGTCTCGGTGGCGGTGGCCTTGGAGGAACCATTGGAGGTGGTAACCTCGGTGGCGGTCTCGGTGGTACAGTTGGCGGCGGTCTCGGCGGTGGTGTTGGTGGTGGTGGTGGCTCTGGGCTTCCATGA

Coding sequence (CDS)

ATGGCCAAATTGTTTATGGCTATGCTCCTGGCTCTTCTAGCCACTCACGCCCTAGCTAGACCCACGCCCAAGGACGCCACCTTCACTGACCAAAAGAACTTCCTAACATACGGAGGACTTGGTGGCTACTCCGGCATCGGTAGCAACGGCCTCCCATTTGGCGGCCTTGGCGGTGCCGTTGGTGGAACTGGCCCTGGTGGTATTGGTGGAGGAATTGGTGGACTCGGTGGATTTGGAGGCGGTGGAGGCGCTGGAGGCGCTGGTCTCGGTGGCGGTGGCCTTGGAGGAACCATTGGAGGTGGTAACCTCGGTGGCGGTCTCGGTGGTACAGTTGGCGGCGGTCTCGGCGGTGGTGTTGGTGGTGGTGGTGGCTCTGGGCTTCCATGA

Protein sequence

MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAVGGTGPGGIGGGIGGLGGFGGGGGAGGAGLGGGGLGGTIGGGNLGGGLGGTVGGGLGGGVGGGGGSGLP

Homology

[Close]

BLAST of Cp4.1LG17g09870 vs. NCBI nr
Match: XP_023514578.1 (acanthoscurrin-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187 bits (474), Expect = 1.69e-58
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GGTGPGGIGGGIGGLGGFGGGGGAGGAGLGGGGLGGTIGGGNLGGGLGGTVGGGLGGGVG 120
           GGTGPGGIGGGIGGLGGFGGGGGAGGAGLGGGGLGGTIGGGNLGGGLGGTVGGGLGGGVG
Sbjct: 61  GGTGPGGIGGGIGGLGGFGGGGGAGGAGLGGGGLGGTIGGGNLGGGLGGTVGGGLGGGVG 120

Query: 121 GGGGSGLP 128
           GGGGSGLP
Sbjct: 121 GGGGSGLP 128

[Close]

BLAST of Cp4.1LG17g09870 vs. NCBI nr
Match: XP_022960398.1 (acanthoscurrin-1-like [Cucurbita moschata] >KAG6592858.1 hypothetical protein SDJN03_12334, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025267.1 hypothetical protein SDJN02_11762, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174 bits (440), Expect = 2.99e-53
Identity = 126/133 (94.74%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GGTGPGGIGGGIGGLGGFGGGGGAG-GAGLGGGGLGGTIGGGNLGGGLGGTVGGGLGGG- 120
           GGTGPGGIGGGIGGLGGFGGGGGAG G GLGGGGLGGT+GGGNLGGGLGGTVGGGLGGG 
Sbjct: 61  GGTGPGGIGGGIGGLGGFGGGGGAGLGGGLGGGGLGGTMGGGNLGGGLGGTVGGGLGGGL 120

Query: 121 ---VGGGGGSGLP 128
              VGGGGGSGLP
Sbjct: 121 GGGVGGGGGSGLP 133

[Close]

BLAST of Cp4.1LG17g09870 vs. NCBI nr
Match: XP_023004890.1 (acanthoscurrin-1-like [Cucurbita maxima])

HSP 1 Score: 171 bits (434), Expect = 2.69e-52
Identity = 125/137 (91.24%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GGTGPGGIGGGIGGLGGFGGGGGAG---------GAGLGGGGLGGTIGGGNLGGGLGGTV 120
           GGTGPGGIGGGIGGLGGFGGG GAG         G GLGGGGLGGT+GGGNLGGGLGGTV
Sbjct: 61  GGTGPGGIGGGIGGLGGFGGG-GAGLGGGLGGGLGGGLGGGGLGGTMGGGNLGGGLGGTV 120

Query: 121 GGGLGGGVGGGGGSGLP 128
           GGGLGGGVGGGGGSGLP
Sbjct: 121 GGGLGGGVGGGGGSGLP 136

[Close]

BLAST of Cp4.1LG17g09870 vs. NCBI nr
Match: KAA0050560.1 (acanthoscurrin-1-like [Cucumis melo var. makuwa] >TYK18800.1 acanthoscurrin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (301), Expect = 3.94e-32
Identity = 98/125 (78.40%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLFMA+LLAL+ATHALARPTPKD TF+DQKNFLTYGG+GGYSGIGSNGLPFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61  GGTG-PGGIGGGIGGLGGFGGG-GGAGGAGLGGGGLGGTIGG--GNLGGGLGGTVGGGLG 120
           GG G  GG+GGG+GG  G GGG GG GG G G GG+GGT GG  G LGGGLGG +GGGLG
Sbjct: 61  GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLGGGLGGGLG 120

[Close]

BLAST of Cp4.1LG17g09870 vs. NCBI nr
Match: XP_011659762.1 (glycine-rich protein 5 [Cucumis sativus])

HSP 1 Score: 117 bits (293), Expect = 6.44e-31
Identity = 97/127 (76.38%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLFMA+LLAL+ATHALARPTPKD TF+DQKNFLTYGG+GGYSGIG+NGLPFGGLGGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GGTG-----PGGIGGGIGGLGGFGGG-GGAGGAGLGGGGLGGTIGGGNLGGGLGGTVGGG 120
           GG G      GG+GGG+GG  G GGG GG GG G G GG+GGT GG  LGGGLGG +GGG
Sbjct: 61  GGGGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGFGGIGGTTGG--LGGGLGGGLGGG 120

[Close]

BLAST of Cp4.1LG17g09870 vs. ExPASy TrEMBL
Match: A0A6J1H8T3 (acanthoscurrin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111461135 PE=4 SV=1)

HSP 1 Score: 174 bits (440), Expect = 1.45e-53
Identity = 126/133 (94.74%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GGTGPGGIGGGIGGLGGFGGGGGAG-GAGLGGGGLGGTIGGGNLGGGLGGTVGGGLGGG- 120
           GGTGPGGIGGGIGGLGGFGGGGGAG G GLGGGGLGGT+GGGNLGGGLGGTVGGGLGGG 
Sbjct: 61  GGTGPGGIGGGIGGLGGFGGGGGAGLGGGLGGGGLGGTMGGGNLGGGLGGTVGGGLGGGL 120

Query: 121 ---VGGGGGSGLP 128
              VGGGGGSGLP
Sbjct: 121 GGGVGGGGGSGLP 133

[Close]

BLAST of Cp4.1LG17g09870 vs. ExPASy TrEMBL
Match: A0A6J1KVV3 (acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1)

HSP 1 Score: 171 bits (434), Expect = 1.30e-52
Identity = 125/137 (91.24%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GGTGPGGIGGGIGGLGGFGGGGGAG---------GAGLGGGGLGGTIGGGNLGGGLGGTV 120
           GGTGPGGIGGGIGGLGGFGGG GAG         G GLGGGGLGGT+GGGNLGGGLGGTV
Sbjct: 61  GGTGPGGIGGGIGGLGGFGGG-GAGLGGGLGGGLGGGLGGGGLGGTMGGGNLGGGLGGTV 120

Query: 121 GGGLGGGVGGGGGSGLP 128
           GGGLGGGVGGGGGSGLP
Sbjct: 121 GGGLGGGVGGGGGSGLP 136

[Close]

BLAST of Cp4.1LG17g09870 vs. ExPASy TrEMBL
Match: A0A5A7U5T7 (Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00150 PE=4 SV=1)

HSP 1 Score: 120 bits (301), Expect = 1.91e-32
Identity = 98/125 (78.40%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLFMA+LLAL+ATHALARPTPKD TF+DQKNFLTYGG+GGYSGIGSNGLPFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61  GGTG-PGGIGGGIGGLGGFGGG-GGAGGAGLGGGGLGGTIGG--GNLGGGLGGTVGGGLG 120
           GG G  GG+GGG+GG  G GGG GG GG G G GG+GGT GG  G LGGGLGG +GGGLG
Sbjct: 61  GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLGGGLGGGLG 120

[Close]

BLAST of Cp4.1LG17g09870 vs. ExPASy TrEMBL
Match: A0A0A0K9U1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336450 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 3.12e-31
Identity = 97/127 (76.38%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLFMA+LLAL+ATHALARPTPKD TF+DQKNFLTYGG+GGYSGIG+NGLPFGGLGGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GGTG-----PGGIGGGIGGLGGFGGG-GGAGGAGLGGGGLGGTIGGGNLGGGLGGTVGGG 120
           GG G      GG+GGG+GG  G GGG GG GG G G GG+GGT GG  LGGGLGG +GGG
Sbjct: 61  GGGGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGFGGIGGTTGG--LGGGLGGGLGGG 120

[Close]

BLAST of Cp4.1LG17g09870 vs. ExPASy TrEMBL
Match: A0A1S3CGR1 (acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1)

HSP 1 Score: 112 bits (279), Expect = 3.58e-29
Identity = 93/120 (77.50%), Postives = 103/120 (85.83%), Query Frame = 0


Query: 6   MAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAVGGTG- 65
           MA+LLAL+ATHALARPTPKD TF+DQKNFLTYGG+GGYSGIGSNGLPFGG+GGA+GG G 
Sbjct: 1   MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAIGGGGL 60

Query: 66  PGGIGGGIGGLGGFGGG-GGAGGAGLGGGGLGGTIGG--GNLGGGLGGTVGGGLGGGVGG 121
            GG+GGG+GG  G GGG GG GG G G GG+GGT GG  G LGGGLGG +GGGLGGGVGG
Sbjct: 61  GGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLGGGLGGGLGGGVGG 120

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g09870 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g09870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514578.1	1.69e-58	100.00	acanthoscurrin-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960398.1	2.99e-53	94.74	acanthoscurrin-1-like [Cucurbita moschata] >KAG6592858.1 hypothetical protein SD...	[more]
XP_023004890.1	2.69e-52	91.24	acanthoscurrin-1-like [Cucurbita maxima]	[more]
KAA0050560.1	3.94e-32	78.40	acanthoscurrin-1-like [Cucumis melo var. makuwa] >TYK18800.1 acanthoscurrin-1-li...	[more]
XP_011659762.1	6.44e-31	76.38	glycine-rich protein 5 [Cucumis sativus]	[more]

BLAST of Cp4.1LG17g09870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8T3	1.45e-53	94.74	acanthoscurrin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111461135 PE=4 SV=1	[more]
A0A6J1KVV3	1.30e-52	91.24	acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1	[more]
A0A5A7U5T7	1.91e-32	78.40	Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94...	[more]
A0A0A0K9U1	3.12e-31	76.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336450 PE=4 SV=1	[more]
A0A1S3CGR1	3.58e-29	77.50	acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1	[more]

BLAST of Cp4.1LG17g09870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463:SF11	GLYCINE-RICH PROTEIN	coord: 1..127
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g09870.1	Cp4.1LG17g09870.1	mRNA