Cp4.1LG17g09590 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g09590
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG17: 7263359 .. 7264896 (+)
RNA-Seq Expression	Cp4.1LG17g09590
Synteny	Cp4.1LG17g09590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAATAATAATGATAATAAGAGTGCAAAGCAAAGGTGTGTGTGTGTGTATTATATATGCCCTTCATCTTCCTCATCATCTTTCCCTCTTCCAAGTTTGTTCTGGTGTGTGGAGTTTGTATCCAAAATTGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATTTGTAATTAGTAATTTAGAGAAGAAAGGTGGATCGGCGACATGGAAAGCGCCCACTTCCGTGGGAAGCACCGGCGGAGGAAGAAGAAAGGGATCAAAATGATTTGGGTTCTTCTAATTTCTCTCAAAATCAAGGTACTTTCTCTTCACCCTACTTATTATCATATAATATAGTATAGCCATGGGGTTTTTGAGGTACACATATGCTTCAAATATATTCATCAAACTTCAATGCATCATCTATCTATCTATCTCACTTTGCGTAAACAACTTCTCTTTGTGGTATGTGGTGGAGAATGGAAAGCACCCAAAAAGAAAGCAATAAAATTGGTGTTTGTATGGTTTGGCTTGGCATATCATATCATATCATCTCATCTCATCATCCGTCCCTTTTCCTCAATTTCCTTCACACCATTCAATTCAACCCTTCCTATTCTCTTTACGCTTTTCACCAAACTTTCATTTTCCTCAATTTTCCTCAATTTTCAATTCTTTTTTGTTTTTTTCCTCACAAACACATATACTAAACACATCATCATCAAACATTGTGCTCAATAAAGGTAGTTGGATCGATGCATGTTATGTTACAGAATTTGGTCACGGGCACCGACTTTTTTTCTTTTTTAATTTTTTTTTTTCCCAAAGCCTAAGAAAATGAAGAACATGGGGGAGATCTAGGAAAGAGATACGTCCATGTCATGTGTGTGCATGCCTTTAATTATTATTGTTATTATTATAAAAATGCCTTTAATATAATATAAAACTATATATATTTGCATATATAGCGCCGCTAGCTCTTGCACATGCACCCATTCACATATTTGTGTGTATGTAATGTAATGTAATGTCAGAAAGTGGGAGGAAGCGACATTATAGAGGCGTAAGACAAAGGCCATGGGGAAAATGGGCAGCGGAGATTCGTGACCCCAACAAAGCGGCTAGAGTTTGGCTTGGCACCTTCGACACTGCCGAGGCTGCTGCCATTGCCTATGACAACGCCGCTCTGAGGTTTAAAGGCAACAAGGCCAAGCTTAATTTTCCTGAACGCCTTCAACCCAACCCTCCTCACTCTGCCTTTCTCCCCCCCGCTGGGGCTGCTGCTTCTTCCGCTCCTCTAGCCCCGACCCCGCCAGCCCCTTCACTTCCTCCGTCCCACGAAGAAGCCTTCCCCGGACTTCACCAGTACGCCCAACTCCTCTCCAGCACCGACGCCGACTTCCCTTATTACTCCTCCACTCTTCTCAACCAACCCCACCATTACCCTCTTTATTCTTCTTCTTCTTCTTCTTCGTCCCAACACCACCACCAACAACAACAACAACATCATGATCAAGATCAGTACGGGAAAGATTTCGGCCCCGGTGGCTCAACCAATT

mRNA sequence

AAATAATAATAATGATAATAAGAGTGCAAAGCAAAGAAAGGTGGATCGGCGACATGGAAAGCGCCCACTTCCGTGGGAAGCACCGGCGGAGGAAGAAGAAAGGGATCAAAATGATTTGGGTTCTTCTAATTTCTCTCAAAATCAAGCCCCGACCCCGCCAGCCCCTTCACTTCCTCCGTCCCACGAAGAAGCCTTCCCCGGACTTCACCAGTACGCCCAACTCCTCTCCAGCACCGACGCCGACTTCCCTTATTACTCCTCCACTCTTCTCAACCAACCCCACCATTACCCTCTTTATTCTTCTTCTTCTTCTTCTTCGTCCCAACACCACCACCAACAACAACAACAACATCATGATCAAGATCAGTACGGGAAAGATTTCGGCCCCGGTGGCTCAACCAATT

Coding sequence (CDS)

ATGATAATAAGAGTGCAAAGCAAAGAAAGGTGGATCGGCGACATGGAAAGCGCCCACTTCCGTGGGAAGCACCGGCGGAGGAAGAAGAAAGGGATCAAAATGATTTGGGTTCTTCTAATTTCTCTCAAAATCAAGCCCCGACCCCGCCAGCCCCTTCACTTCCTCCGTCCCACGAAGAAGCCTTCCCCGGACTTCACCAGTACGCCCAACTCCTCTCCAGCACCGACGCCGACTTCCCTTATTACTCCTCCACTCTTCTCAACCAACCCCACCATTACCCTCTTTATTCTTCTTCTTCTTCTTCTTCGTCCCAACACCACCACCAACAACAACAACAACATCATGATCAAGATCAGTACGGGAAAGATTTCGGCCCCGGTGGCTCAACCAATT

Protein sequence

MIIRVQSKERWIGDMESAHFRGKHRRRKKKGIKMIWVLLISLKIKPRPRQPLHFLRPTKKPSPDFTSTPNSSPAPTPTSLITPPLFSTNPTITLFILLLLLLRPNTTTNNNNNIMIKISTGKISAPVAQPI

Homology

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BLAST of Cp4.1LG17g09590 vs. NCBI nr
Match: XP_023514576.1 (ethylene-responsive transcription factor ERF113-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.3 bits (155), Expect = 2.70e-09
Identity = 35/43 (81.40%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 15 MESAHFRGKHRRRKKKGIKMIWVLLISLKIKPRPRQPLHFLRP 57
          MESAHFRGKHRRRKKKGIKMIWVLLISLKIK R     H  RP
Sbjct: 1  MESAHFRGKHRRRKKKGIKMIWVLLISLKIKRRKVDRRHGKRP 43

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g09590 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g09590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514576.1	2.70e-09	81.40	ethylene-responsive transcription factor ERF113-like [Cucurbita pepo subsp. pepo...	[more]

BLAST of Cp4.1LG17g09590 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g09590 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g09590.1	Cp4.1LG17g09590.1	mRNA