Cp4.1LG17g09080 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g09080
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Histone H2A
Location	Cp4.1LG17: 4907107 .. 4913913 (+)
RNA-Seq Expression	Cp4.1LG17g09080
Synteny	Cp4.1LG17g09080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTGCAAGTCTTCGTGGAGTTATCGAAGAGGGAGGGGGTTGGGGGGTTGGGGGCATTACTTTTATCTACCTCGCTTCCCGTCGTTCCTTATCGGTTCTTTTTCTTTCTCCTCTAAAAATCCGTCACTGCAAGTGAGAGGAACCCTAATTCTTGGGCTTCAAAATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGGTCTCTCTCTCTTTCTGTACACTTCACCACTTCTCTTTCTACCTTCCTTTTGTGTGTCTTCTGTGGATCTGTGTTCGTTTGAGGTTTATGCCGGTTTTCACTTTACAAATCCACAAATTTTCTAACGTAGATGCGTTTCAAGGTTTCCAACCCTTAGAATTTGGACATTGGGTGTTTTTTTTCTTCTAAAACTTTTAAAATTTTGTGTTTGAAAGTTTTATATTTGTTTATTTCAGATGGGTCCTATTTTTCCACCCGCGCTTCTTGTTTTCCTGTTTTCCTGTTTATTGAATAGCTTGATAAGTTCGTTTTCTTCATGGGCTGCGCTTATTGGAGCTGTAAGAGTGTGAGATCGACGTTTAGGAGGTGGCCGTCTGAGAATCTCTGTAGGGGTACCTCTTAGTCCTCTTTGATGTTAGAAGTAGGTGCATGTTTCTGGGTATGTGTTCCTTTAGCTAGTGTCGGTTTGCTGCTGTTGTTCTGTGCTTGAAGAAGTTGCCTTGCCGCCAATGTTCTTTTGTCGAGGGATGCCCACCACTAGTATGATATGGTATGTGCAAGTGCGAAGTATGCATACAAGATCTCTTTCTCATGCTATTGAAGTTGTTTGTCGAAAAGATGATGCAAGTCAATTGTAATAGCCCAAGCCCACCGCTAGTAGATATTGTCCTCTTTGGGCTTTCCCTTTTGAGCTTTCCCTCAAGGTTTTTAAAATGCGTCTACTAGGGAGAGGTTTCTACACCCTTATTAAGAATGTTTCGTTCTCCTCCCCAACCGTTTCTACACCCTTATTAAGAATGTTTCGTTCTCCTCCCCAACCTATGTGGGATCTCACATCAATATATTGGAGATAGATTGGGATTTGACCATTCTTATGTTTAGAACTTTCAAGATCATAATGCATGGGTTCACAGTAGGCCTTTATAATATATCTTGTTCGTTTACATGGTACTTAGTCTTTTTCCTAGCGTTAGAGTTATAGAAACTTGAAAATTGGACTAAAAGTTTTATTGTGAACTTGAAATATGAATTACAGTTGATTATCCCAAGTAATTTGAGAAACTGAGGAAAATTCTTAATCACCATTTAGTGACTTACTCTGTAGTCAATGACTAATATGCTTTCACTTTATCCTCAAGGTGTATTTGACCAAGAGGTTCTCCTGTGGAAAATTAAATAATTGTATATAGAGCAAAATTGAAGTTTCAACAAGTTTTTCTCCCTTCTCCACTCCTTTTTGTAGAAAAATTCAAGCCACTGCTTCTGGGTAAATCCTCCTAGATATTTGAAACACAGTTGGTTGTTGCCAATAATTTGTAACAATAAGTGCAGTCCATAATTTAGTATATATAACACCTAGCGCTAGAAATCATCATGGCCATGGCACTTGTATTATTTTCTTCTTTTGGTAGAGAATGATTCTCAGCAATTACTTTTAAACTCGGCATTGTGTCCGAAACTTCACAAGTCCAAGGCCCACCTAAGCTCACGCCCTTGCTACATCTTCAATGATACTTCGTTTAGCATTTGTTGGACCTCTCTTCCTTTACAGTTCTAGTTCCAACCACTCCTTTTGTCATTGGCGGAGGCTTCCTTTAGACTCGTTTTTATTTTCAACAACTATTTGTCTTGCTTCTATTGCATTCCTTTTTCCCCACATGTGCTCAATTGGGCATCCACTCTATGCCACTCTACTCATTGTTTTACGCATTGTTATGTGTTTTCTTGGTTTTTTATGTGTCGTTCTCAAACCTGTTCATATGGAGGTGGATCTTATAATTAAAAGGGAAAAAAAAAACTCTCTTTAGTTTGACTTGAGCTACACATTATTGCCCTTTCATGCGATTCTTCTGGTAGGTGGCGTTTTTGGCCATCTTATGGAAAATCTTGCTCTTGAGGAATACCGAACACAAGAAATTTCAGGGTAAGAGGGTCTTGGGGGGTGATGTGGGTCTTGGCTCACTGTTATGCCTCTCTTTAGGTCATTTACAAGTAGCACCTGTTATCATTTATCTTTTTCTTTTTAACTCTTAGTAACTAGAGTCTTTTCAAGTAGTTTTGTTCTGTGTTTAGTAGCTCCTTTTTAGTTTAATCCTTTTCTTTCATTCAAAATAAGGATGGAAGGTGGATTGTATGGAGAGTTATGTCATGGTATTGGTGGTGGGGTTTATCATTACAAAACAAAATCTCTCTCAATCAAGAGAGGAAGGTACAGGTCTAAATAGTGCCCCAGTTGAATTATTACAGACATATGTTTTTCTTTGATAATGAGGAAAAGTTTCCGGCGTATGGTCAATGTTTTGCAAGAATTTTGTTTGATTAGGGGATAGGGCTACTTTTTCTTAGGCAGCAATTGTTGGTCTTCATTGTCTGAAATATACTCTAAATCGTTCATGTTAAGTTTTTTCTTTGCCTGTGTTTAGCTTCTCTTGGGGAGGATAGCCAGAATTTGTGGAACTCTGGAACCCATTGACTGACGAAGTTGTAGAAAGTTATGGTGATAGAAACTTGCATTTTTCGAAATAGGAGACTAAAGGGATCCAAGCTGTTTTAACCAATATTCTTGTACATTACCTTTTTTTAGATTTCACATTAGCCAAAACTTGAGCTCATGACCTGTCCAGGAACACAGATTGCCGTGCCCTCGACCAATAAACCAAGAAGTTGTTATTGTACAGTACATTTTTTTAATAAATTCTCTACCACCGTGGTATTGATTGAAGAAATTATCATGAACTTTTATTGGGAAGGTCCATATGTGGATGGTGAAAATTGTCCCCTACTCCTTTGGATTCGGGTGGTCTTGAAATTGGAATTTTGAGTTTGAAAAACACAGCTTTGATTTCTAAAGGTTGTTAAGATATTTGATAGAATAAAAATTGATAGTGGCGTAGCATCATCATTGATAAATATGGCTAGAAATCTATTGAGTTAACAACAGTGGTGCACTAGAAGTTGTTGGTCATTCGTCGTTAGGGGTGAAATGGATTGGTTTAGGTCAGTTTTTGTAGAAATCCTATCTGACCCATTCCGATTTAGAGAAGAAACCCATCTCAATTCATGTTTGAACAAAAGTAGGTCGGATCGAGTCCCTCATGCTTTTTTCCCCACCCAGTCCATTTCCATCTTGGTTTCTCCATCTCCTTTACCCATTCCTTTTTCTTCCCAAACCTGACCAAATGTTTGTATCAATCAATCTTCTTCTTTTCCCACAAAATCCATCTTAATTTCTCAATCTTCAATTTCCTCCTCCTTCTCTTTCCATATTTCCCTTCTTCCTCTTCCATTGTTCAGACCACCATCCTCAACATCATAAAACTACAACATTATCCAAATCGTAACTCAAATCATGAGTGGGTTGAACCTAAAGATAGATCTGGATTAGGTGATAGAAAGAAAGGAAGAGAGAGAGAGAAAAAAAAGGTGTGGCCAGGTGAAATAGGTAAAGCAAGCTTCAGATTGAGAAAATCTAGTCTGGGTTGCCGTCGAAGAAGAAAACCATGCTTGGGTTGCCTTTGAAGCAGAAATCCTGTTGTTTTCATTTGTGCCCGGATGTGAGAACGACGATCGGAAGATTTTGATTTAAGAAAATGATGGTTGCCATGTTGATTGGGAGAGATTCATGACTTCGATTATAGACTAGAAAGAGCGTAAGAACGGAAGCGAATCAAGGAGAGAGAGAGAGAGCATCAGAAATGAATGAAACCTAACTCAAATAATGAGTCAGTTCGGGTAAATCAAGAACTGATCTGAACCATAGTGGTTCGGTTTGAGTCAAATAATGCTTAAAAGTGAACCAAACTGACCCAAACCGAAGAAACCCTTCAGTCATAACAAACTACAAAAAACTGTTCTTGCAAACCTAGAATGCCAATGGCATTGATTGAAGATTCTAAAGTTTTGAATGGACAAATGGATCAAATGATGGAACGAGCGAAAATTTCCCAGACCGTACAAGATGCAAACATTGATTGTAGTCATTCCATGTATTGAGGATTTTGGGGTTAGATTCCGTTGATATGGAATTTCGAATTGATTTCCAGTTATTCATCAACNTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTCTGATAAGTTAATACTTAATTGTGTTTTGAATGGTCTTGAAAACGCACTCAAGTATGTACGGCTTTTCTTCCCCAAATTCTTTGTTTTTAAGCCACTGGAAACCATCATTTCCTGCCATGTGGTGTCTGTTTAACAATTGTTAAAGTGAAAACCGGTAATGTGCCGACTTTAATTGTGCTTCTATATAAATCCCTTGTGAGGGAATTTCAGATTTCTGTATTTTTCTTACTACATCAACTAGATGAGTTACTTTTCCTTCAATCCTGTTGAGGCTCCTCTCTCTCTCTCTCTCTCTCTCTTTTGCTGGTAGTAATACCCTCTAACGGAGAAGAAGAAGCTAGTGTTGCATATTACATATATATTATATCTATATCTTGTTATGCTCTTATTGAGTTCTGCCACCCATTTTTCCTTGCTTTCCTTTTGTTTTCTTCTTAGAACTACTTTTATATTTTGATCAATATGCAACTTATGATGGACTGGGTGGATAAAGTGTGGCCGGTAAAGACGAAGATGTGGCGTTTGAAAACATTTCAAGATGAAACTGGTGCTTTTGTAGATGCTTCATTTTAGCCCTTTTTGCTGTATATCTTCTGAACTAATGGCTTCTCATTTTCTGTTTTCACTTTTTTTATGCTTTCTTTTCAATGTTGGTTTATAGTTTCTTCTGCTCTGCGTATATTCCTTTTAGTATACTGCAAAAATTTTCTCTGTTGTGGGATGATTAGAATATCACCTATGTTTTTATTGCACATCTTGTTTGGTATAATAAGGCACAATTACCGAAAGTGATTTGTAGATGACTTTATAGCAGTTTGATGTATAACTTTTCTATAAGATAAAGTAGCATTAAAAAATGCTTTGGGATCGTTTTGAAACTTCAAAAAAATATTTGCAGATTATGAAAGATCGACTATGTAGCATTTTGATGTATAACTTTTGGACTAGTATGAAAGTTATGCATATGTTATTCTCCATTTTTGTTTGTTATCTTTGAAATATAAATGGCTTAGACAGTGGAAGCAATTTCTTTCCCTTTTTTTTCTTGAACTTTTTCACACTTTCTCATTGTTGTTGAGGGGTTTTTGGTATTGGATGGCTTGGTGATACAGTTTCCAGTGGGAAGGGTTCACCGGCAACTTAAAACAAGGGTTGCCGCCAACGGTCGTGTCGGGGCTACAGCAGCTGTATACACAGCAGCAATCTTGGAGTACCTGACGGCAGAAGTGTTAGAGCTGGCCGGGAACGCGAGCAAGGATCTGAAGGTAAAGCGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGATGAAGAACTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTGATCCCCCACATCCACAAATCACTCATTAACAAATCCTCCAAGGAATGAATTGAATTGAATTGAATTGAATTGAATAGGTTGTCTGTCTCTTTTAGAAGTATGGGTTTTTTATCCTTAATCTTACAGTTTAGTTGAGTGGTTATCATATGCTGTCATGTCATTGTCTGGTCTAATTTAGTTGTGTCATATATCACCAATTCTACTTTTGTGATGTGATATTGCTTTATCCATTTAGTAGGCACAAGGAGATACGAAGTCATTTCGTGTTTTGTAAGTTTTAATATGCAAAATCTTTCTCATTTTTAGTCTCATTTCTATCTCTGTTCATCTGAAACATCTCTCATTCATCGCTGAAAAGGAAATGAAACTAAGCCAGTTTGAATAAGTGTCTTTCTTGATGAACTCTTGAAAATCTAACGAAAAAGATTTACAAATATAAGGTTATCTCCACAACACTAGGTGGGAAATAACACCTTGGTTCAGTAAGGGGAATTACAGGGTTGTTACTAAATAGAACAATTTGGAAACGGCTCTCAAAAACTGTCACCCAAAGAAGTGGCCTTTTCGCCAATGTTCTTGAGGGTGAGTATTTCAACGAGGGAAGAAGAAGAAGAAGAAGAAGAAGAAAATAGGAAAAAGGGTGCTGTCTATTCTCTCTAAAAGGAATGGTGAGTATTTTGTATTTCTATTGAGGGGTGCTGGAGTGAGGTCTCTGCAAAAGAATTCTGGTGATGAAGGGTGAGATGGCAGCAAGTAAGGCGCTCGGGCATTCCTCGTGCGGCAGATGTCCGCATCCAGATATCGTTATCAGTCTCTGTGTTATGATACAACCTCATCGTTCATTGAAACGGAAACAAGAACAAAAACGAACGAGTACAGAGGGATGAGAGTGAAGAAGACATACTGAATTAGGGAGTTTGGAAGCCATAACTCTGGAAGAGTTGAGGGAGACGAGAGCATCCTCGACACCACCGACCACCAGCACGGGCATCTCTTCAACAGACTTCACCAAAGCTTCGACGTTTTGAGGAGAAAGTAATGTCTCGTATGATAATCTTGCTATCTCATGCAGTGCTTCAT

mRNA sequence

ATCTGCAAGTCTTCGTGGAGTTATCGAAGAGGGAGGGGGTTGGGGGGTTGGGGGCATTACTTTTATCTACCTCGCTTCCCGTCGTTCCTTATCGGTTCTTTTTCTTTCTCCTCTAAAAATCCGTCACTGCAAGTGAGAGGAACCCTAATTCTTGGGCTTCAAAATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGATGGGTCCTATTTTTCCACCCGCGCTTCTTGTTTTCCTGTTTTCCTGTTTATTGAATAGCTTGATAAGTTCGTTTTCTTCATGGGCTGCGCTTATTGGAGCTCTAGTGTCGGTTTGCTGCTGTTGTTCTGTGCTTGAAGAAGTTGCCTTGCCGCCAATGTTCTTTTGTCGAGGGATGCCCACCACTAGTATGATATGGTATGTGCAAGTGCGAAGTGGCGTTTTTGGCCATCTTATGGAAAATCTTGCTCTTGAGGAATACCGAACACAAGAAATTTCAGGACCGTACAAGATGCAAACATTGATTGTAGTCATTCCATGTATTGAGGATTTTGGGTTTCCAGTGGGAAGGGTTCACCGGCAACTTAAAACAAGGGTTGCCGCCAACGGTCGTGTCGGGGCTACAGCAGCTGTATACACAGCAGCAATCTTGGAGTACCTGACGGCAGAAGTGTTAGAGCTGGCCGGGAACGCGAGCAAGGATCTGAAGGTAAAGCGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGATGAAGAACTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTGATCCCCCACATCCACAAATCACTCATTAACAAATCCTCCAAGGAATGAATTGAATTGAATTGAATTGAATTGAATAGGTTGTCTGTCTCTTTTAGAAGTATGGGTTTTTTATCCTTAATCTTACAGTTTAGTTGAGTGGTTATCATATGCTGTCATGTCATTGTCTGGTCTAATTTAGTTGTGTCATATATCACCAATTCTACTTTTGTGATGTGATATTGCTTTATCCATTTAGTAGGCACAAGGAGATACGAAGTCATTTCGTGTTTTGTAAGTTTTAATATGCAAAATCTTTCTCATTTTTAGTCTCATTTCTATCTCTGTTCATCTGAAACATCTCTCATTCATCGCTGAAAAGGAAATGAAACTAAGCCAGTTTGAATAAGTGTCTTTCTTGATGAACTCTTGAAAATCTAACGAAAAAGATTTACAAATATAAGGTTATCTCCACAACACTAGGTGGGAAATAACACCTTGGTTCAGTAAGGGGAATTACAGGGTTGTTACTAAATAGAACAATTTGGAAACGGCTCTCAAAAACTGTCACCCAAAGAAGTGGCCTTTTCGCCAATGTTCTTGAGGGTGAGTATTTCAACGAGGGAAGAAGAAGAAGAAGAAGAAGAAGAAAATAGGAAAAAGGGTGCTGTCTATTCTCTCTAAAAGGAATGGTGAGTATTTTGTATTTCTATTGAGGGGTGCTGGAGTGAGGTCTCTGCAAAAGAATTCTGGTGATGAAGGGTGAGATGGCAGCAAGTAAGGCGCTCGGGCATTCCTCGTGCGGCAGATGTCCGCATCCAGATATCGTTATCAGTCTCTGTGTTATGATACAACCTCATCGTTCATTGAAACGGAAACAAGAACAAAAACGAACGAGTACAGAGGGATGAGAGTGAAGAAGACATACTGAATTAGGGAGTTTGGAAGCCATAACTCTGGAAGAGTTGAGGGAGACGAGAGCATCCTCGACACCACCGACCACCAGCACGGGCATCTCTTCAACAGACTTCACCAAAGCTTCGACGTTTTGAGGAGAAAGTAATGTCTCGTATGATAATCTTGCTATCTCATGCAGTGCTTCAT

Coding sequence (CDS)

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGATGGGTCCTATTTTTCCACCCGCGCTTCTTGTTTTCCTGTTTTCCTGTTTATTGAATAGCTTGATAAGTTCGTTTTCTTCATGGGCTGCGCTTATTGGAGCTCTAGTGTCGGTTTGCTGCTGTTGTTCTGTGCTTGAAGAAGTTGCCTTGCCGCCAATGTTCTTTTGTCGAGGGATGCCCACCACTAGTATGATATGGTATGTGCAAGTGCGAAGTGGCGTTTTTGGCCATCTTATGGAAAATCTTGCTCTTGAGGAATACCGAACACAAGAAATTTCAGGACCGTACAAGATGCAAACATTGATTGTAGTCATTCCATGTATTGAGGATTTTGGGTTTCCAGTGGGAAGGGTTCACCGGCAACTTAAAACAAGGGTTGCCGCCAACGGTCGTGTCGGGGCTACAGCAGCTGTATACACAGCAGCAATCTTGGAGTACCTGACGGCAGAAGTGTTAGAGCTGGCCGGGAACGCGAGCAAGGATCTGAAGGTAAAGCGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGATGAAGAACTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTGATCCCCCACATCCACAAATCACTCATTAACAAATCCTCCAAGGAATGA

Protein sequence

MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQMGPIFPPALLVFLFSCLLNSLISSFSSWAALIGALVSVCCCCSVLEEVALPPMFFCRGMPTTSMIWYVQVRSGVFGHLMENLALEEYRTQEISGPYKMQTLIVVIPCIEDFGFPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

Homology

[Close]

BLAST of Cp4.1LG17g09080 vs. ExPASy Swiss-Prot
Match: Q9C944 (Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.2e-46
Identity = 121/246 (49.19%), Postives = 129/246 (52.44%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQMGPIFPPALLVFLFSCLLNSLISS 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQ                        
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQ------------------------ 60

Query: 61  FSSWAALIGALVSVCCCCSVLEEVALPPMFFCRGMPTTSMIWYVQVRSGVFGHLMENLAL 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 EEYRTQEISGPYKMQTLIVVIPCIEDFGFPVGRVHRQLKTRVAANGRVGATAAVYTAAIL 180
                                       FPVGRVHR LKTR  A+GRVGATAAVYTAAIL
Sbjct: 121 ----------------------------FPVGRVHRLLKTRSTAHGRVGATAAVYTAAIL 134

Query: 181 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI 240
           EYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI
Sbjct: 181 EYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI 134

Query: 241 NKSSKE 247
           NKS+KE
Sbjct: 241 NKSAKE 134

[Close]

BLAST of Cp4.1LG17g09080 vs. ExPASy Swiss-Prot
Match: Q8S857 (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.1e-45
Identity = 93/98 (94.90%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 149 FPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 208
           FPVGR+HRQLK RV+ANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 42  FPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 101

Query: 209 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 247
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct: 102 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139

[Close]

BLAST of Cp4.1LG17g09080 vs. ExPASy Swiss-Prot
Match: O23628 (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.4e-45
Identity = 92/98 (93.88%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 149 FPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 208
           FPVGR+HRQLKTRV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 39  FPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHL 98

Query: 209 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 247
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct: 99  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136

[Close]

BLAST of Cp4.1LG17g09080 vs. ExPASy Swiss-Prot
Match: Q84MP7 (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.5e-45
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 149 FPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 208
           FPVGR+HRQLK R  ANGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 40  FPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 99

Query: 209 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 247
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct: 100 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137

[Close]

BLAST of Cp4.1LG17g09080 vs. ExPASy Swiss-Prot
Match: Q8H7Y8 (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.2e-45
Identity = 91/98 (92.86%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 149 FPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 208
           FPVGR+HRQLK+R +A+GRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 41  FPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 100

Query: 209 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 247
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SKE
Sbjct: 101 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138

[Close]

BLAST of Cp4.1LG17g09080 vs. NCBI nr
Match: KAF8393275.1 (hypothetical protein HHK36_021516 [Tetracentron sinense])

HSP 1 Score: 212 bits (540), Expect = 9.18e-65
Identity = 147/278 (52.88%), Postives = 168/278 (60.43%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ-------MGPIFPPALLVFLFSCL 60
           MSGKGAKGL MGKS +N KDKDKKKPVSRSSRAGLQ       MG      + V      
Sbjct: 1   MSGKGAKGLTMGKSPAN-KDKDKKKPVSRSSRAGLQEEGSLMEMGAGRENTVRV------ 60

Query: 61  LNSLISSFSS--WAALIGALVSVCCCCSVLEEVALPP---MFFCRGMPTTSMIWYVQVRS 120
           +   +    +  W  +      + C     EE    P      C+          ++ RS
Sbjct: 61  VQQFVLKIENCRWVLVKKLATFLVCEGGTREEDRELPHSGTHTCKEAENCCRPGEIRERS 120

Query: 121 GVF-------------------GHLMENLALEEYRTQEISGPYKMQTLIVVIPC-IEDFG 180
            +F                   GHL E+     +R            L+VV+ C +E F 
Sbjct: 121 SLFKMGGYLPVINIRNCYLYLDGHLHESALTRSFRY-----------LLVVLFCRVEKFR 180

Query: 181 FPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 240
           FPVGR+HR LK+R+AANGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 181 FPVGRIHRLLKSRIAANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 240

Query: 241 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 246
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSK+
Sbjct: 241 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKD 260

[Close]

BLAST of Cp4.1LG17g09080 vs. NCBI nr
Match: XP_022953233.1 (probable histone H2A variant 3 [Cucurbita moschata] >XP_022959863.1 probable histone H2A variant 3 [Cucurbita moschata] >XP_022991416.1 probable histone H2A variant 3 [Cucurbita maxima] >XP_023004192.1 probable histone H2A variant 3 [Cucurbita maxima] >XP_023513932.1 probable histone H2A variant 3 [Cucurbita pepo subsp. pepo] >XP_023548701.1 probable histone H2A variant 3 [Cucurbita pepo subsp. pepo] >KAG6593413.1 putative histone H2A variant 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014117.1 putative histone H2A variant 3, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG7025761.1 putative histone H2A variant 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206 bits (523), Expect = 6.00e-64
Identity = 134/246 (54.47%), Postives = 134/246 (54.47%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQMGPIFPPALLVFLFSCLLNSLISS 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ                        
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ------------------------ 60

Query: 61  FSSWAALIGALVSVCCCCSVLEEVALPPMFFCRGMPTTSMIWYVQVRSGVFGHLMENLAL 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 EEYRTQEISGPYKMQTLIVVIPCIEDFGFPVGRVHRQLKTRVAANGRVGATAAVYTAAIL 180
                                       FPVGRVHRQLKTRVAANGRVGATAAVYTAAIL
Sbjct: 121 ----------------------------FPVGRVHRQLKTRVAANGRVGATAAVYTAAIL 134

Query: 181 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI 240
           EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI
Sbjct: 181 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI 134

Query: 241 NKSSKE 246
           NKSSKE
Sbjct: 241 NKSSKE 134

[Close]

BLAST of Cp4.1LG17g09080 vs. NCBI nr
Match: XP_022152569.1 (probable histone H2A variant 3 [Momordica charantia] >XP_030526377.1 probable histone H2A variant 3 [Rhodamnia argentea] >XP_038899732.1 probable histone H2A variant 3 [Benincasa hispida] >KAF8011693.1 hypothetical protein BT93_J2080 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 204 bits (519), Expect = 2.43e-63
Identity = 133/246 (54.07%), Postives = 134/246 (54.47%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQMGPIFPPALLVFLFSCLLNSLISS 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ                        
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ------------------------ 60

Query: 61  FSSWAALIGALVSVCCCCSVLEEVALPPMFFCRGMPTTSMIWYVQVRSGVFGHLMENLAL 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 EEYRTQEISGPYKMQTLIVVIPCIEDFGFPVGRVHRQLKTRVAANGRVGATAAVYTAAIL 180
                                       FPVGRVHRQLK+RVAANGRVGATAAVYTAAIL
Sbjct: 121 ----------------------------FPVGRVHRQLKSRVAANGRVGATAAVYTAAIL 134

Query: 181 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI 240
           EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI
Sbjct: 181 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI 134

Query: 241 NKSSKE 246
           NKSSKE
Sbjct: 241 NKSSKE 134

[Close]

BLAST of Cp4.1LG17g09080 vs. NCBI nr
Match: PON57930.1 (Histone H2A [Parasponia andersonii])

HSP 1 Score: 206 bits (524), Expect = 2.55e-63
Identity = 135/249 (54.22%), Postives = 156/249 (62.65%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQMGPIFPPALLVFLFSCLLNSLIS 60
           MSGKGAKGLI GK+ +N +KDKDKKKPVSRSSRAGLQ                       
Sbjct: 1   MSGKGAKGLITGKTPANKDKDKDKKKPVSRSSRAGLQAA--------------------- 60

Query: 61  SFSSWAALIGALVSVCCCCSVLEEVALPPMFFCRGMPTTSMIWYVQVRSG-VFGHLMENL 120
                                 +E  L      R +P    +W + +  G  +  +++++
Sbjct: 61  ----------------------QEHTL------RALP----VWVLPLLMGKAYFEMLDHI 120

Query: 121 ALEEYRTQEISGPY-KMQTLIVVIPCIEDFGFPVGRVHRQLKTRVAANGRVGATAAVYTA 180
              +  T + S  +    T  +V+       FPVGR+HR LKTRV ANGRVGATAAVY+A
Sbjct: 121 GSNDSPTSQWSELFFDFVTDRIVL-------FPVGRIHRLLKTRVQANGRVGATAAVYSA 180

Query: 181 AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHK 240
           AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHK
Sbjct: 181 AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHK 189

Query: 241 SLINKSSKE 246
           SLINKSSKE
Sbjct: 241 SLINKSSKE 189

[Close]

BLAST of Cp4.1LG17g09080 vs. NCBI nr
Match: PON90747.1 (Histone H2A [Trema orientale])

HSP 1 Score: 206 bits (523), Expect = 3.61e-63
Identity = 135/249 (54.22%), Postives = 156/249 (62.65%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQMGPIFPPALLVFLFSCLLNSLIS 60
           MSGKGAKGLI GK+ +N +KDKDKKKPVSRSSRAGLQ                       
Sbjct: 1   MSGKGAKGLITGKTPANKDKDKDKKKPVSRSSRAGLQAA--------------------- 60

Query: 61  SFSSWAALIGALVSVCCCCSVLEEVALPPMFFCRGMPTTSMIWYVQVRSGV-FGHLMENL 120
                                 +E  L      R +P    +W + +  G+ +  + +++
Sbjct: 61  ----------------------QEHTL------RALP----VWVLPLLMGMAYFEMRDHI 120

Query: 121 ALEEYRTQEISGPY-KMQTLIVVIPCIEDFGFPVGRVHRQLKTRVAANGRVGATAAVYTA 180
              +  T + S  +    T  +V+       FPVGR+HR LKTRV ANGRVGATAAVY+A
Sbjct: 121 GSNDSPTSQWSEVFFDFVTDKIVL-------FPVGRIHRLLKTRVQANGRVGATAAVYSA 180

Query: 181 AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHK 240
           AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHK
Sbjct: 181 AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHK 189

Query: 241 SLINKSSKE 246
           SLINKSSKE
Sbjct: 241 SLINKSSKE 189

[Close]

BLAST of Cp4.1LG17g09080 vs. ExPASy TrEMBL
Match: A0A6J1JQN2 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488055 PE=3 SV=1)

HSP 1 Score: 206 bits (523), Expect = 2.90e-64
Identity = 134/246 (54.47%), Postives = 134/246 (54.47%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQMGPIFPPALLVFLFSCLLNSLISS 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ                        
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ------------------------ 60

Query: 61  FSSWAALIGALVSVCCCCSVLEEVALPPMFFCRGMPTTSMIWYVQVRSGVFGHLMENLAL 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 EEYRTQEISGPYKMQTLIVVIPCIEDFGFPVGRVHRQLKTRVAANGRVGATAAVYTAAIL 180
                                       FPVGRVHRQLKTRVAANGRVGATAAVYTAAIL
Sbjct: 121 ----------------------------FPVGRVHRQLKTRVAANGRVGATAAVYTAAIL 134

Query: 181 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI 240
           EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI
Sbjct: 181 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI 134

Query: 241 NKSSKE 246
           NKSSKE
Sbjct: 241 NKSSKE 134

[Close]

BLAST of Cp4.1LG17g09080 vs. ExPASy TrEMBL
Match: A0A6J1GMV1 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111455842 PE=3 SV=1)

HSP 1 Score: 206 bits (523), Expect = 2.90e-64
Identity = 134/246 (54.47%), Postives = 134/246 (54.47%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQMGPIFPPALLVFLFSCLLNSLISS 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ                        
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ------------------------ 60

Query: 61  FSSWAALIGALVSVCCCCSVLEEVALPPMFFCRGMPTTSMIWYVQVRSGVFGHLMENLAL 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 EEYRTQEISGPYKMQTLIVVIPCIEDFGFPVGRVHRQLKTRVAANGRVGATAAVYTAAIL 180
                                       FPVGRVHRQLKTRVAANGRVGATAAVYTAAIL
Sbjct: 121 ----------------------------FPVGRVHRQLKTRVAANGRVGATAAVYTAAIL 134

Query: 181 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI 240
           EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI
Sbjct: 181 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI 134

Query: 241 NKSSKE 246
           NKSSKE
Sbjct: 241 NKSSKE 134

[Close]

BLAST of Cp4.1LG17g09080 vs. ExPASy TrEMBL
Match: A0A6J1DGE3 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111020264 PE=3 SV=1)

HSP 1 Score: 204 bits (519), Expect = 1.17e-63
Identity = 133/246 (54.07%), Postives = 134/246 (54.47%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQMGPIFPPALLVFLFSCLLNSLISS 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ                        
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ------------------------ 60

Query: 61  FSSWAALIGALVSVCCCCSVLEEVALPPMFFCRGMPTTSMIWYVQVRSGVFGHLMENLAL 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 EEYRTQEISGPYKMQTLIVVIPCIEDFGFPVGRVHRQLKTRVAANGRVGATAAVYTAAIL 180
                                       FPVGRVHRQLK+RVAANGRVGATAAVYTAAIL
Sbjct: 121 ----------------------------FPVGRVHRQLKSRVAANGRVGATAAVYTAAIL 134

Query: 181 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI 240
           EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI
Sbjct: 181 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI 134

Query: 241 NKSSKE 246
           NKSSKE
Sbjct: 241 NKSSKE 134

[Close]

BLAST of Cp4.1LG17g09080 vs. ExPASy TrEMBL
Match: A0A2P5CA44 (Histone H2A OS=Parasponia andersonii OX=3476 GN=PanWU01x14_170200 PE=3 SV=1)

HSP 1 Score: 206 bits (524), Expect = 1.23e-63
Identity = 135/249 (54.22%), Postives = 156/249 (62.65%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQMGPIFPPALLVFLFSCLLNSLIS 60
           MSGKGAKGLI GK+ +N +KDKDKKKPVSRSSRAGLQ                       
Sbjct: 1   MSGKGAKGLITGKTPANKDKDKDKKKPVSRSSRAGLQAA--------------------- 60

Query: 61  SFSSWAALIGALVSVCCCCSVLEEVALPPMFFCRGMPTTSMIWYVQVRSG-VFGHLMENL 120
                                 +E  L      R +P    +W + +  G  +  +++++
Sbjct: 61  ----------------------QEHTL------RALP----VWVLPLLMGKAYFEMLDHI 120

Query: 121 ALEEYRTQEISGPY-KMQTLIVVIPCIEDFGFPVGRVHRQLKTRVAANGRVGATAAVYTA 180
              +  T + S  +    T  +V+       FPVGR+HR LKTRV ANGRVGATAAVY+A
Sbjct: 121 GSNDSPTSQWSELFFDFVTDRIVL-------FPVGRIHRLLKTRVQANGRVGATAAVYSA 180

Query: 181 AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHK 240
           AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHK
Sbjct: 181 AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHK 189

Query: 241 SLINKSSKE 246
           SLINKSSKE
Sbjct: 241 SLINKSSKE 189

[Close]

BLAST of Cp4.1LG17g09080 vs. ExPASy TrEMBL
Match: A0A2P5EYY3 (Histone H2A OS=Trema orientale OX=63057 GN=TorRG33x02_133850 PE=3 SV=1)

HSP 1 Score: 206 bits (523), Expect = 1.75e-63
Identity = 135/249 (54.22%), Postives = 156/249 (62.65%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQMGPIFPPALLVFLFSCLLNSLIS 60
           MSGKGAKGLI GK+ +N +KDKDKKKPVSRSSRAGLQ                       
Sbjct: 1   MSGKGAKGLITGKTPANKDKDKDKKKPVSRSSRAGLQAA--------------------- 60

Query: 61  SFSSWAALIGALVSVCCCCSVLEEVALPPMFFCRGMPTTSMIWYVQVRSGV-FGHLMENL 120
                                 +E  L      R +P    +W + +  G+ +  + +++
Sbjct: 61  ----------------------QEHTL------RALP----VWVLPLLMGMAYFEMRDHI 120

Query: 121 ALEEYRTQEISGPY-KMQTLIVVIPCIEDFGFPVGRVHRQLKTRVAANGRVGATAAVYTA 180
              +  T + S  +    T  +V+       FPVGR+HR LKTRV ANGRVGATAAVY+A
Sbjct: 121 GSNDSPTSQWSEVFFDFVTDKIVL-------FPVGRIHRLLKTRVQANGRVGATAAVYSA 180

Query: 181 AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHK 240
           AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHK
Sbjct: 181 AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHK 189

Query: 241 SLINKSSKE 246
           SLINKSSKE
Sbjct: 241 SLINKSSKE 189

[Close]

BLAST of Cp4.1LG17g09080 vs. TAIR 10
Match: AT1G52740.1 (histone H2A protein 9 )

HSP 1 Score: 187.2 bits (474), Expect = 1.6e-47
Identity = 121/246 (49.19%), Postives = 129/246 (52.44%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQMGPIFPPALLVFLFSCLLNSLISS 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQ                        
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQ------------------------ 60

Query: 61  FSSWAALIGALVSVCCCCSVLEEVALPPMFFCRGMPTTSMIWYVQVRSGVFGHLMENLAL 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 EEYRTQEISGPYKMQTLIVVIPCIEDFGFPVGRVHRQLKTRVAANGRVGATAAVYTAAIL 180
                                       FPVGRVHR LKTR  A+GRVGATAAVYTAAIL
Sbjct: 121 ----------------------------FPVGRVHRLLKTRSTAHGRVGATAAVYTAAIL 134

Query: 181 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI 240
           EYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI
Sbjct: 181 EYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLI 134

Query: 241 NKSSKE 247
           NKS+KE
Sbjct: 241 NKSAKE 134

[Close]

BLAST of Cp4.1LG17g09080 vs. TAIR 10
Match: AT3G54560.1 (histone H2A 11 )

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-46
Identity = 92/98 (93.88%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 149 FPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 208
           FPVGR+HRQLKTRV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 39  FPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHL 98

Query: 209 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 247
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct: 99  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136

HSP 2 Score: 47.8 bits (112), Expect = 1.5e-05
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1  MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQ 37
          M+GKG KGL+  K  +A+ +KDKDKKKP+SRS+RAG+Q
Sbjct: 1  MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQ 38

[Close]

BLAST of Cp4.1LG17g09080 vs. TAIR 10
Match: AT2G38810.1 (histone H2A 8 )

HSP 1 Score: 179.5 bits (454), Expect = 3.3e-45
Identity = 89/98 (90.82%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 149 FPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 208
           FPVGR+HRQLK RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 39  FPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHL 98

Query: 209 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 247
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct: 99  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

[Close]

BLAST of Cp4.1LG17g09080 vs. TAIR 10
Match: AT2G38810.3 (histone H2A 8 )

HSP 1 Score: 179.5 bits (454), Expect = 3.3e-45
Identity = 89/98 (90.82%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 149 FPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 208
           FPVGR+HRQLK RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 39  FPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHL 98

Query: 209 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 247
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct: 99  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

[Close]

BLAST of Cp4.1LG17g09080 vs. TAIR 10
Match: AT2G38810.2 (histone H2A 8 )

HSP 1 Score: 179.5 bits (454), Expect = 3.3e-45
Identity = 89/98 (90.82%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 149 FPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 208
           FPVGR+HRQLK RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 39  FPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHL 98

Query: 209 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 247
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct: 99  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g09080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C944	2.2e-46	49.19	Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1...	[more]
Q8S857	1.1e-45	94.90	Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g...	[more]
O23628	1.4e-45	93.88	Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1	[more]
Q84MP7	2.5e-45	94.90	Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g...	[more]
Q8H7Y8	7.2e-45	92.86	Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g...	[more]

BLAST of Cp4.1LG17g09080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF8393275.1	9.18e-65	52.88	hypothetical protein HHK36_021516 [Tetracentron sinense]	[more]
XP_022953233.1	6.00e-64	54.47	probable histone H2A variant 3 [Cucurbita moschata] >XP_022959863.1 probable his...	[more]
XP_022152569.1	2.43e-63	54.07	probable histone H2A variant 3 [Momordica charantia] >XP_030526377.1 probable hi...	[more]
PON57930.1	2.55e-63	54.22	Histone H2A [Parasponia andersonii]	[more]
PON90747.1	3.61e-63	54.22	Histone H2A [Trema orientale]	[more]

BLAST of Cp4.1LG17g09080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JQN2	2.90e-64	54.47	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488055 PE=3 SV=1	[more]
A0A6J1GMV1	2.90e-64	54.47	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111455842 PE=3 SV=1	[more]
A0A6J1DGE3	1.17e-63	54.07	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111020264 PE=3 SV=1	[more]
A0A2P5CA44	1.23e-63	54.22	Histone H2A OS=Parasponia andersonii OX=3476 GN=PanWU01x14_170200 PE=3 SV=1	[more]
A0A2P5EYY3	1.75e-63	54.22	Histone H2A OS=Trema orientale OX=63057 GN=TorRG33x02_133850 PE=3 SV=1	[more]

BLAST of Cp4.1LG17g09080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52740.1	1.6e-47	49.19	histone H2A protein 9	[more]
AT3G54560.1	1.0e-46	93.88	histone H2A 11	[more]
AT2G38810.1	3.3e-45	90.82	histone H2A 8	[more]
AT2G38810.3	3.3e-45	90.82	histone H2A 8	[more]
AT2G38810.2	3.3e-45	90.82	histone H2A 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 182..195 score: 84.63 coord: 196..210 score: 65.78 coord: 223..241 score: 51.98 coord: 167..182 score: 71.55 coord: 137..159 score: 37.47
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 124..246 e-value: 8.6E-54 score: 194.7
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 149..242 e-value: 1.92793E-54 score: 169.053
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 143..246 e-value: 1.3E-46 score: 159.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 148..223
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 216..245 e-value: 2.1E-10 score: 40.2
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 149..215 e-value: 7.0E-16 score: 58.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR23430:SF300	HISTONE H2A	coord: 2..37
None	No IPR available	PANTHER	PTHR23430:SF300	HISTONE H2A	coord: 148..244
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..37
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 148..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g09080.1	Cp4.1LG17g09080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity