Cp4.1LG17g08830 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g08830
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionethylene-responsive transcription factor ERF084
LocationCp4.1LG17: 5133392 .. 5133955 (+)
RNA-Seq ExpressionCp4.1LG17g08830
SyntenyCp4.1LG17g08830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAATTGACTCTCTCTACAGAGCCTTCTTCCAAACCCAATTCTCCCAATCCCCACCGCCGGACTCCCAGCTCGACGGAATCGCCGCCGTCGTCGGCCGGAAAGTCCTCTTCGGCGACATTCCTCCCTCAACCAGCAGGTCAAAGACGCCGGCCGTTACGGGGCAGAAGAGTTATAGAGGAGTACGAAAGCGGCCGTGGGGACGGTGGTCGGCAGAGATACGAGACCGAATCGGACGGTGCAGACACTGGCTGGGAACGTTCGATACGGCGGAAGAGGCGGCGCGTGCATACGACGCGGCGGCGAGGCGGTTGAGAGGATCAAAGGCGCGAACTAACTTCGAAATGCCGTTGGTAGTACCGCTTGAGTCCACATCATCATCATCCACGTCATCAGTGGAAGGGAAAAGGAATGGTAATAATGGTAATAAGTTGAAGGCGGTGAAGAAACCAAGTGGGCGGAAATGTGCGGTGGTTACGACGGCGGCGCATTTGTTCAGCCGTGGAATGGAGCTTGATTTGAAACTGGGGGTTGACTTTGTTAATGGTGGTCAAAGTGCATCATAA

mRNA sequence

CCAATTGACTCTCTCTACAGAGCCTTCTTCCAAACCCAATTCTCCCAATCCCCACCGCCGGACTCCCAGCTCGACGGAATCGCCGCCGTCGTCGGCCGGAAAGCGGTGAAGAAACCAAGTGGGCGGAAATGTGCGGTGGTTACGACGGCGGCGCATTTGTTCAGCCGTGGAATGGAGCTTGATTTGAAACTGGGGGTTGACTTTGTTAATGGTGGTCAAAGTGCATCATAA

Coding sequence (CDS)

CCAATTGACTCTCTCTACAGAGCCTTCTTCCAAACCCAATTCTCCCAATCCCCACCGCCGGACTCCCAGCTCGACGGAATCGCCGCCGTCGTCGGCCGGAAAGCGGTGAAGAAACCAAGTGGGCGGAAATGTGCGGTGGTTACGACGGCGGCGCATTTGTTCAGCCGTGGAATGGAGCTTGATTTGAAACTGGGGGTTGACTTTGTTAATGGTGGTCAAAGTGCATCATAA

Protein sequence

PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRKAVKKPSGRKCAVVTTAAHLFSRGMELDLKLGVDFVNGGQSAS
Homology
[Close]
BLAST of Cp4.1LG17g08830 vs. NCBI nr
Match: XP_023514530.1 (ethylene-responsive transcription factor ERF084 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106 bits (264), Expect = 1.08e-26
Identity = 76/187 (40.64%), Postives = 76/187 (40.64%), Query Frame = 0 

Query: 1   PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRK-------------------------- 60
           PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRK                          
Sbjct: 6   PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRKVLFGDIPPSTSRSKTPAVTGQKSYRG 65

Query: 61  ------------------------------------------------------------ 76
                                                                       
Sbjct: 66  VRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEMPLVVP 125

[Close]
BLAST of Cp4.1LG17g08830 vs. NCBI nr
Match: XP_023004864.1 (ethylene-responsive transcription factor ERF084 [Cucurbita maxima])

HSP 1 Score: 106 bits (264), Expect = 1.08e-26
Identity = 76/187 (40.64%), Postives = 76/187 (40.64%), Query Frame = 0 

Query: 1   PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRK-------------------------- 60
           PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRK                          
Sbjct: 6   PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRKVLFGDIPPSTSGSKAPAVTGQKSYRG 65

Query: 61  ------------------------------------------------------------ 76
                                                                       
Sbjct: 66  VRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEMPLVVP 125

[Close]
BLAST of Cp4.1LG17g08830 vs. NCBI nr
Match: KAG6593374.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025723.1 Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105 bits (261), Expect = 3.06e-26
Identity = 75/187 (40.11%), Postives = 76/187 (40.64%), Query Frame = 0 

Query: 1   PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRK-------------------------- 60
           PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRK                          
Sbjct: 6   PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRKVLFGDIPPSTSGSKTPAVTGQKSYRG 65

Query: 61  ------------------------------------------------------------ 76
                                                                       
Sbjct: 66  VRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEMPLVVP 125

[Close]
BLAST of Cp4.1LG17g08830 vs. NCBI nr
Match: XP_022960429.1 (ethylene-responsive transcription factor ERF084-like [Cucurbita moschata])

HSP 1 Score: 103 bits (256), Expect = 1.73e-25
Identity = 74/187 (39.57%), Postives = 75/187 (40.11%), Query Frame = 0 

Query: 1   PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRK-------------------------- 60
           PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRK                          
Sbjct: 6   PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRKVLFGDIPPSTSGSKTPAVTGQKSYRG 65

Query: 61  ------------------------------------------------------------ 76
                                                                       
Sbjct: 66  VRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEMPLVVP 125

[Close]
BLAST of Cp4.1LG17g08830 vs. NCBI nr
Match: KAA0058723.1 (AP2 domain-containing protein [Cucumis melo var. makuwa] >TYK10531.1 AP2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 8.55e-08
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 1  PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRKAV----KKPSGRKCAVVTTA 50
          PI  LY  FF+TQF  SPPP+SQLDGIAAVVGR+ +     +P+  K +  T+A
Sbjct: 6  PIPPLYNTFFETQFPHSPPPESQLDGIAAVVGREVLFGEYNRPTPTKSSSSTSA 59

[Close]
BLAST of Cp4.1LG17g08830 vs. ExPASy TrEMBL
Match: A0A6J1KXI6 (ethylene-responsive transcription factor ERF084 OS=Cucurbita maxima OX=3661 GN=LOC111498043 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 5.22e-27
Identity = 76/187 (40.64%), Postives = 76/187 (40.64%), Query Frame = 0 

Query: 1   PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRK-------------------------- 60
           PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRK                          
Sbjct: 6   PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRKVLFGDIPPSTSGSKAPAVTGQKSYRG 65

Query: 61  ------------------------------------------------------------ 76
                                                                       
Sbjct: 66  VRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEMPLVVP 125

[Close]
BLAST of Cp4.1LG17g08830 vs. ExPASy TrEMBL
Match: A0A6J1HB06 (ethylene-responsive transcription factor ERF084-like OS=Cucurbita moschata OX=3662 GN=LOC111461162 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 8.39e-26
Identity = 74/187 (39.57%), Postives = 75/187 (40.11%), Query Frame = 0 

Query: 1   PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRK-------------------------- 60
           PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRK                          
Sbjct: 6   PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRKVLFGDIPPSTSGSKTPAVTGQKSYRG 65

Query: 61  ------------------------------------------------------------ 76
                                                                       
Sbjct: 66  VRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEMPLVVP 125

[Close]
BLAST of Cp4.1LG17g08830 vs. ExPASy TrEMBL
Match: A0A5A7US44 (AP2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001820 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.14e-08
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 1  PIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRKAV----KKPSGRKCAVVTTA 50
          PI  LY  FF+TQF  SPPP+SQLDGIAAVVGR+ +     +P+  K +  T+A
Sbjct: 6  PIPPLYNTFFETQFPHSPPPESQLDGIAAVVGREVLFGEYNRPTPTKSSSSTSA 59

[Close]
BLAST of Cp4.1LG17g08830 vs. ExPASy TrEMBL
Match: A0A0A0KA16 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432130 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.29e-04
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 38  KPSGRKCAVVTTAAHLFSRGMELDLKLGV 66
           K + RKC+VVT+AAHLFS G+ELDLKLGV
Sbjct: 148 KKNDRKCSVVTSAAHLFSPGVELDLKLGV 176

[Close]
BLAST of Cp4.1LG17g08830 vs. ExPASy TrEMBL
Match: A0A6J1DQ41 (ethylene-responsive transcription factor ERF084 OS=Momordica charantia OX=3673 GN=LOC111022048 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.92e-04
Identity = 24/32 (75.00%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 2  IDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGR 33
          I SLY AFF+TQF   PPP  QLDGIAAVVGR
Sbjct: 20 IQSLYEAFFETQFLPEPPP-VQLDGIAAVVGR 50

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g08830 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g08830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023514530.11.08e-2640.64ethylene-responsive transcription factor ERF084 [Cucurbita pepo subsp. pepo][more]
XP_023004864.11.08e-2640.64ethylene-responsive transcription factor ERF084 [Cucurbita maxima][more]
KAG6593374.13.06e-2640.11Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp.... [more]
XP_022960429.11.73e-2539.57ethylene-responsive transcription factor ERF084-like [Cucurbita moschata][more]
KAA0058723.18.55e-0853.70AP2 domain-containing protein [Cucumis melo var. makuwa] >TYK10531.1 AP2 domain-... [more]
BLAST of Cp4.1LG17g08830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KXI65.22e-2740.64ethylene-responsive transcription factor ERF084 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HB068.39e-2639.57ethylene-responsive transcription factor ERF084-like OS=Cucurbita moschata OX=36... [more]
A0A5A7US444.14e-0853.70AP2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A0A0KA162.29e-0475.86AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432130 PE=... [more]
A0A6J1DQ413.92e-0475.00ethylene-responsive transcription factor ERF084 OS=Momordica charantia OX=3673 G... [more]
BLAST of Cp4.1LG17g08830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g08830.1Cp4.1LG17g08830.1mRNA