Cp4.1LG17g08820 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g08820
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ethylene-responsive transcription factor ERF003-like
Location	Cp4.1LG17: 5152578 .. 5153307 (-)
RNA-Seq Expression	Cp4.1LG17g08820
Synteny	Cp4.1LG17g08820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTCTATATATACTTCTCTTCTCTCTTCACTTCCATCACCAACCAAACTCCGACCTCTTCCACCATTGCACCTCCTCTTCAACCTCCTCCTCCTTCTCCGACGACCGCCATGGCCCGACCTCAACAACGGTACCGGGGTGTTCGCCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGTAATTCTCTTCTTTTATACACTAAAAATACAAACTTTCTTCTTCCTTCTACTTAAAACTTTCTTTTTCAGAAAGACGAGAATATGGTTGGGGACGTTCGAGACGGCGGAGGATGCAGCCCGAGCCTACGACGAGGCAGCGAGGTTGATGTGCGGCCCCAAAGCTAGAACTAACTTCCAACTCAATCTCAACGATCAACCCTCCTTTTCTTCTTCCTCCAACCTTCTCTCACCGGCGCTCATAGCCAAACTACACAAATGCCATTTAGCCTCACTCCAAATCGCCAAAAAACACATCCATAAGCAACACCCTGGGTTCGACCCGAACGGCGGTCCTCCACCGAGCATTTCCAGAACCACCACCGGCCCGTGGCCACCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGATCAACAACAACGACAACAACATTCATCGTCAGCAATGCCTTCAACCTCTTGAAGACGATCACATTGAACAAATGATACAAGAGTTGCTAGATCTCGGACCGTTTGAAATCATTACATAG

mRNA sequence

TGGTCTATATATACTTCTCTTCTCTCTTCACTTCCATCACCAACCAAACTCCGACCTCTTCCACCATTGCACCTCCTCTTCAACCTCCTCCTCCTTCTCCGACGACCGCCATGGCCCGACCTCAACAACGGTACCGGGGTGTTCGCCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTCCTCACTCCAAATCGCCAAAAAACACATCCATAAGCAACACCCTGGGTTCGACCCGAACGGCGGTCCTCCACCGAGCATTTCCAGAACCACCACCGGCCCGTGGCCACCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGATCAACAACAACGACAACAACATTCATCGTCAGCAATGCCTTCAACCTCTTGAAGACGATCACATTGAACAAATGATACAAGAGTTGCTAGATCTCGGACCGTTTGAAATCATTACATAG

Coding sequence (CDS)

TGGTCTATATATACTTCTCTTCTCTCTTCACTTCCATCACCAACCAAACTCCGACCTCTTCCACCATTGCACCTCCTCTTCAACCTCCTCCTCCTTCTCCGACGACCGCCATGGCCCGACCTCAACAACGGTACCGGGGTGTTCGCCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTCCTCACTCCAAATCGCCAAAAAACACATCCATAAGCAACACCCTGGGTTCGACCCGAACGGCGGTCCTCCACCGAGCATTTCCAGAACCACCACCGGCCCGTGGCCACCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGATCAACAACAACGACAACAACATTCATCGTCAGCAATGCCTTCAACCTCTTGAAGACGATCACATTGAACAAATGATACAAGAGTTGCTAGATCTCGGACCGTTTGAAATCATTACATAG

Protein sequence

WSIYTSLLSSLPSPTKLRPLPPLHLLFNLLLLLRRPPWPDLNNGTGVFANDIGALGSPKFATLYSSLQIAKKHIHKQHPGFDPNGGPPPSISRTTTGPWPPEETWVYSDEAQMEINNNDNNIHRQQCLQPLEDDHIEQMIQELLDLGPFEIIT

Homology

[Close]

BLAST of Cp4.1LG17g08820 vs. NCBI nr
Match: XP_023513557.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190 bits (482), Expect = 1.55e-58
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 65  SSLQIAKKHIHKQHPGFDPNGGPPPSISRTTTGPWPPEETWVYSDEAQMEINNNDNNIHR 124
           +SLQIAKKHIHKQHPGFDPNGGPPPSISRTTTGPWPPEETWVYSDEAQMEINNNDNNIHR
Sbjct: 94  ASLQIAKKHIHKQHPGFDPNGGPPPSISRTTTGPWPPEETWVYSDEAQMEINNNDNNIHR 153

Query: 125 QQCLQPLEDDHIEQMIQELLDLGPFEIIT 153
           QQCLQPLEDDHIEQMIQELLDLGPFEIIT
Sbjct: 154 QQCLQPLEDDHIEQMIQELLDLGPFEIIT 182

[Close]

BLAST of Cp4.1LG17g08820 vs. NCBI nr
Match: XP_022959765.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita moschata])

HSP 1 Score: 172 bits (437), Expect = 1.10e-51
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 65  SSLQIAKKHIHKQHPGFDPNGGPPPSISRTTTGPWPPEETWVYSDEAQMEINNNDNN-IH 124
           +SLQI KKHIHKQHPGFD NGGPPPSISRTTTG WPPEETWVYSDEAQMEINNNDNN IH
Sbjct: 94  ASLQITKKHIHKQHPGFDLNGGPPPSISRTTTGQWPPEETWVYSDEAQMEINNNDNNNIH 153

Query: 125 RQQCLQPLEDDHIEQMIQELLDLGPFEIIT 153
            Q CLQPLEDDHIEQMIQELLDLGPFEIIT
Sbjct: 154 HQPCLQPLEDDHIEQMIQELLDLGPFEIIT 183

[Close]

BLAST of Cp4.1LG17g08820 vs. NCBI nr
Match: XP_023004394.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita maxima])

HSP 1 Score: 170 bits (430), Expect = 1.12e-50
Identity = 81/89 (91.01%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 65  SSLQIAKKHIHKQHPGFDPNGGPPPSISRTTTGPWPPEETWVYSDEAQMEINNNDNNIHR 124
           +SLQIAKKHIHKQHPGFDPNGGPPPSISRTTTG WPPEETWVYSDEAQM+INNN   IH 
Sbjct: 94  ASLQIAKKHIHKQHPGFDPNGGPPPSISRTTTGQWPPEETWVYSDEAQMKINNN---IHH 153

Query: 125 QQCLQPLEDDHIEQMIQELLDLGPFEIIT 153
           Q CLQPLEDDHIEQMIQELLDLGPFEIIT
Sbjct: 154 QPCLQPLEDDHIEQMIQELLDLGPFEIIT 179

[Close]

BLAST of Cp4.1LG17g08820 vs. NCBI nr
Match: KAG6593370.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025719.1 Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167 bits (423), Expect = 1.46e-49
Identity = 82/90 (91.11%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 65  SSLQIAKKHIHKQHPGFDPNGGPPPSISRTTTGPWPPEETWVYSDEAQMEINNNDNN-IH 124
           +SLQIAKKHIHKQ PGFD NGGPPPSISRTTTG WPPEETWVYSDEAQMEINNNDNN I 
Sbjct: 94  ASLQIAKKHIHKQQPGFDLNGGPPPSISRTTTGQWPPEETWVYSDEAQMEINNNDNNNIP 153

Query: 125 RQQCLQPLEDDHIEQMIQELLDLGPFEIIT 153
            Q CLQPLEDDHIEQMIQELLDLGPFEIIT
Sbjct: 154 HQPCLQPLEDDHIEQMIQELLDLGPFEIIT 183

[Close]

BLAST of Cp4.1LG17g08820 vs. NCBI nr
Match: XP_038899890.1 (ethylene-responsive transcription factor ERF003-like [Benincasa hispida])

HSP 1 Score: 136 bits (342), Expect = 2.71e-37
Identity = 73/93 (78.49%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 65  SSLQIAKKHIHKQHP-GFDPNGGPPPSISRTTTGP-WPPEETWVYSDEAQMEIN--NNDN 124
           +SLQIAKKHIHKQHP GF P   PPPSI+  TTG  W PEETWVYSDE QME+N  NN+N
Sbjct: 94  ASLQIAKKHIHKQHPAGFQP---PPPSIAGPTTGRRWTPEETWVYSDEGQMEMNDNNNNN 153

Query: 125 NIHRQQCLQPLEDDHIEQMIQELLDLGPFEIIT 153
           NIH QQCLQPLEDDHIEQMIQELL LG FEIIT
Sbjct: 154 NIHHQQCLQPLEDDHIEQMIQELLHLGSFEIIT 183

[Close]

BLAST of Cp4.1LG17g08820 vs. ExPASy TrEMBL
Match: A0A6J1H793 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=3662 GN=LOC111460738 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 5.30e-52
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 65  SSLQIAKKHIHKQHPGFDPNGGPPPSISRTTTGPWPPEETWVYSDEAQMEINNNDNN-IH 124
           +SLQI KKHIHKQHPGFD NGGPPPSISRTTTG WPPEETWVYSDEAQMEINNNDNN IH
Sbjct: 94  ASLQITKKHIHKQHPGFDLNGGPPPSISRTTTGQWPPEETWVYSDEAQMEINNNDNNNIH 153

Query: 125 RQQCLQPLEDDHIEQMIQELLDLGPFEIIT 153
            Q CLQPLEDDHIEQMIQELLDLGPFEIIT
Sbjct: 154 HQPCLQPLEDDHIEQMIQELLDLGPFEIIT 183

[Close]

BLAST of Cp4.1LG17g08820 vs. ExPASy TrEMBL
Match: A0A6J1KW57 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661 GN=LOC111497726 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 5.41e-51
Identity = 81/89 (91.01%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 65  SSLQIAKKHIHKQHPGFDPNGGPPPSISRTTTGPWPPEETWVYSDEAQMEINNNDNNIHR 124
           +SLQIAKKHIHKQHPGFDPNGGPPPSISRTTTG WPPEETWVYSDEAQM+INNN   IH 
Sbjct: 94  ASLQIAKKHIHKQHPGFDPNGGPPPSISRTTTGQWPPEETWVYSDEAQMKINNN---IHH 153

Query: 125 QQCLQPLEDDHIEQMIQELLDLGPFEIIT 153
           Q CLQPLEDDHIEQMIQELLDLGPFEIIT
Sbjct: 154 QPCLQPLEDDHIEQMIQELLDLGPFEIIT 179

[Close]

BLAST of Cp4.1LG17g08820 vs. ExPASy TrEMBL
Match: A0A5D3CEY4 (Ethylene-responsive transcription factor ERF003-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001780 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 1.84e-36
Identity = 67/100 (67.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 65  SSLQIAKKHIHKQHPGFDPN-----GGPPPSISRTTTGPWPPEETWVYSDEAQMEINNND 124
           +SLQIAK+H+HKQHPGF+P+     G PPPSI+  TT  W  +ETWVYSD+ Q+E+NNN+
Sbjct: 79  ASLQIAKQHVHKQHPGFEPSYLAYGGSPPPSITGATTSRWTSDETWVYSDKGQLEMNNNN 138

Query: 125 NN-----IHRQQC-LQPLEDDHIEQMIQELLDLGPFEIIT 153
           NN     IH QQC L+PLEDDHIEQMIQELLDLG FEIIT
Sbjct: 139 NNNNNNNIHHQQCQLEPLEDDHIEQMIQELLDLGSFEIIT 178

[Close]

BLAST of Cp4.1LG17g08820 vs. ExPASy TrEMBL
Match: A0A1S3CE50 (ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=LOC103499832 PE=4 SV=1)

HSP 1 Score: 131 bits (330), Expect = 1.45e-35
Identity = 67/104 (64.42%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 65  SSLQIAKKHIHKQHPGFDPN-----GGPPPSISRTTTGPWPPEETWVYSDEAQMEINNND 124
           +SLQIAK+H+HKQHPGF+P+     G PPPSI+  TT  W  +ETWVYSD+ Q+E+NNN+
Sbjct: 99  ASLQIAKQHVHKQHPGFEPSYLAYGGSPPPSITGATTSRWTSDETWVYSDKGQLEMNNNN 158

Query: 125 NN---------IHRQQC-LQPLEDDHIEQMIQELLDLGPFEIIT 153
           NN         IH QQC L+PLEDDHIEQMIQELLDLG FEIIT
Sbjct: 159 NNNNNNNNNNNIHHQQCQLEPLEDDHIEQMIQELLDLGSFEIIT 202

[Close]

BLAST of Cp4.1LG17g08820 vs. ExPASy TrEMBL
Match: A0A6J1DLD7 (ethylene-responsive transcription factor ERF003-like OS=Momordica charantia OX=3673 GN=LOC111021997 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 5.07e-35
Identity = 70/93 (75.27%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 65  SSLQIAKKHIHKQHPGFDPN----GGPPPSISRTTTGPWPPEETWVYSDEAQMEINNNDN 124
           +SLQIAKKHIHK HPGFDP+    GG P SI  TTT  WP +ETWVYSDE Q E NNN  
Sbjct: 38  ASLQIAKKHIHK-HPGFDPSYAPYGGSPTSIVGTTTDGWPQDETWVYSDEGQTEANNN-- 97

Query: 125 NIHRQQCLQPLEDDHIEQMIQELLDLGPFEIIT 153
            IH QQCLQPLEDDHIEQMIQELLDLG FEIIT
Sbjct: 98  -IH-QQCLQPLEDDHIEQMIQELLDLGSFEIIT 125

[Close]

BLAST of Cp4.1LG17g08820 vs. TAIR 10
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 5.1e-04
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 0


Query: 114 EINNNDNNIHRQQCLQPLEDDHIEQMIQELLDLGPFEI 152
           EI   D N + QQ  +PLE+DHIEQMI+ELL  G  E+
Sbjct: 135 EIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIEL 172

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g08820 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g08820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513557.1	1.55e-58	98.88	ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo...	[more]
XP_022959765.1	1.10e-51	92.22	ethylene-responsive transcription factor ERF003-like [Cucurbita moschata]	[more]
XP_023004394.1	1.12e-50	91.01	ethylene-responsive transcription factor ERF003-like [Cucurbita maxima]	[more]
KAG6593370.1	1.46e-49	91.11	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_038899890.1	2.71e-37	78.49	ethylene-responsive transcription factor ERF003-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG17g08820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H793	5.30e-52	92.22	ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1KW57	5.41e-51	91.01	ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661...	[more]
A0A5D3CEY4	1.84e-36	67.00	Ethylene-responsive transcription factor ERF003-like protein OS=Cucumis melo var...	[more]
A0A1S3CE50	1.45e-35	64.42	ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1DLD7	5.07e-35	75.27	ethylene-responsive transcription factor ERF003-like OS=Momordica charantia OX=3...	[more]

BLAST of Cp4.1LG17g08820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25190.1	5.1e-04	55.26	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g08820.1	Cp4.1LG17g08820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity