Cp4.1LG17g08560 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g08560
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein HEADING DATE REPRESSOR 1
Location	Cp4.1LG17: 5230398 .. 5233734 (-)
RNA-Seq Expression	Cp4.1LG17g08560
Synteny	Cp4.1LG17g08560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTTTGTTCTGCAATTTATCTGCTTCGCGTCTCGGTGAACGCGACCACATCAAATACCCACAACTCCATGTTCCTCTCTTCCTCTCTCTCTTCCTCTGTATGTGAAAATTCGAAGAGGATTCTTCACAGCGAAGATTCGGCGAAGTTCTTCCCCGAATTCTCTCCAATGGCGCGCGATAATTCCGGTAAGCTAGATAGGATTCTGGAAGGCTTTTCTCCGGCGTCGGCTCCTCGAATTCAGTGGAAATCTCGCCGGAGATCAGGTAGTACTACTTAATTCTTCTCTCTGGTGGAATTTGGCTTCAATTTTTGAAAATTTTGTTAAGTCGATGAAGATCGGAAACGCGGAATTTCTCTATGGGAAAGTAATCGAATCCGTCTAGGTTTTCTAATTATCGATATAATCTGAGACGTTTCCTCACAAATTTTGAAGAACACTTCTGCCCTAACCAGGCTCCTCTGTTCTGATTCCTCATCTTTGGCTCTTGAACTGCTTTCGTGATTTCTTTGATGATGAATTCATTTTTCAGTTCGTCAATAGCCTTGAAAAATTGGAGATGAGAAAAGATGCACGCTAACACGAACGGTTAACTTCGCTCTTAAGTTACGTGTGCTTTTCTGTTTCTGTTCATGCCTGCCTCGTGATTTCTGTTACCAAAAAAAAAAAGAAAAAAAAAAAAAAAATCAAATAATTTCTAATTGCAAAACTAATATAATTTCAATAAAATAAAACATTTAATGTAAATTTGAAAACTTTTTCTATGGTTTTTATTATTATTACTATTTATTTATTTATTTGGAGGAATTAATGATAGGGAGTAGATTAATAGGAGTAGTTTGATAGTTTGACAGTTTGATAAAAAGATNTTTTTTTTTTTTTTTTTTTGTGTGGTGATAAAATCGGCTGAACCAACCCATTTTTCACCCCACCCACCCGTGGGAGTCGACGTTTTCATTGACTTTATTTATATATTCATTTATTCATTTTCCTCATTTATTTGATACGAAAGGCCATTATTGTCATCATATGGGGAATTATTAATTAAAATTGAATTTAGAAACTATTATTTTTTAAAACGACGTCGGAAAAGGAATCCTCCACCCCATAATAGAGCATGCCTTACAAGTCAGTCATGAGCTTTTTAGTTTGTTTTTAAATAATTTTTTATGCTTTTCAAAAAGCTTTTATAATTTGATTTTGAGTTTTCCAATGAAAACTCAATAAGAATAAGAATAGTGTTTATTTCTTATAAATTCATAACATTCCTCTTAATTAGTGGACGTGATAATTAAGCTTAGGTGAGTGAGGATTGAATTACAGGATTGATCATTGGGATGCACCTTGCCATATATAGGGAATGTTTAAACGTTCTAAATGGACATTGGATCCCTATTCCTACACTTGGATACTTTTCTCTAATATCAAGTTTGGTATTTAAATGATGGGACTCAACACCAACTATTTTAAGTTTTTTTTTTTCATTAGGCCCACATTCAGTTCTCAATTTCTTGTTGTCTTCTTCTCCTTCAAACTCAAGATTTGATGATTTGATGATTTGATGATTTGATGATTTCTTGTTACCATCCCATCTTCCCATTTCATTTCATTTATCGTCATCATAATGTAATTTTTGTATGATTTATTATATTTTTTAAGACTCGCCTTTACTTTTCTCCTTTTTTTTCTTTCTTGTTCATAGTTCACTGTTTCACTCATTATTGTATCTTTGCTTTTAATATAATTTTCCCTTTTCTGATGGAAAGCATGGTTTGTTCATACTTTTCACAATTTGGTTATGTCAACCTCAATTGGATGTCTTTTTTTTCCACTTTTCTTTCTTCTTTGGACCTAATCTAACTTAGAGTTATCTTGAGATCGAGAGTTCGAGCTTATTTTTCTTTTTTAATAATTAAAAAGTCCTATAAAACCTAAAAAATCTGTTGGTGTCATTTTGATCTCTAAACTTCATATTTTGTTGTTAAGGGGTGATGGTGTAGCTCGCTAGTGCTAGGTCTCATAGCTTAGAGTTATCATGAGGTTGAGAGTTTGAGCCTCTCTCACCCCATTAGTATTTTTTTTAACGATTAAAAAAAAGTTTATGTCATTTTAATCCCTGGACTTTAAATTTTTTTCACCGAGGGGTGGTGGCACAGTTGGTTAGCGCGTAGGTCTCATAGCCTCTCTCACCCCATAGTTTATTTCTTTTTTAAACAATTAAAAACAAACGTCCTGATAAACCTAGCTAAACATTTGTTTGTGTAGTTTTGATCTCTGAACTTTAAATTTTTTCATCAAGGGGTGGTGGCGCAGTTGGCTAGCGCGTAGGTCTCATAGCTTAGAGTTATCCTGAGGTCGAGAGTTCGAGCCTCTCTCACCCCATAGTATTTTTCTTTTTTAACCACTAAAAAAAACGTCCTATAAAACCTAGCTAAACATTTGTTTGTGTGATCACTTAACTTCAAATATTTTCTTCTAAGGGGTGGGGTGGTGGCGTAGTTGGCTAGCGTGTACGTCTCATAGCTTAGAGTTATCTTGAGGTTGAGATTTGGAGCCTCTCTCACCCTATAGTATTTTCTTAAACAATTAAAAAAAAAACGTCCTATAAAATCTAGCTAAACATTTGTATCGTTTTGATCTCTGAAGTTCAAATTTTTTCATCAAGCATTTCTGTATTTGTTGTCCCTCTAATTTTGTTGGAACTAGAATGCTCTCTTCTTTCCAACAGCTACCGAGAGGATCTTAGACAACATAACTCAAGATCATGATGCTGCTGACAAAACATCCGACAAACACGAACAACCTCAGCCCCCCAAAACACTCTTCCCCGACCTCTCCGACCGTCGAAAGGCCCTCTTTGAGCCTTTAGAATCCGTCAAAAACATCAATGGCCGCAGACCATCAGCTGAATCCTTACTCCCTCCACCCGACTTCGACGCCACCGCATATCCCCGAGGCTGGCTGATCGGAAAGAAGCGAAAACTCGTCAATGTCGACGTTGTCGAAAGCATGCGGAGGATTGCCATTCAAGAAATGAACAGAAAGGCATTCCTCTAATTTTACTATTATTATTACATCACATCAACGTGGTCTCTCTAGTTCATTGTTGTTGTCGTTGTTGTCGTTGTTGTTATTGTAGGACCGAGAAATCGGCGGTCTGAATGAGCAGCTCGACGAGGACGCGCGCTGCTTAGAACATCTTCAAATTCAACTTCTACAAGAGAAGAGCAAAAGATCAGAGGTCGAGAGGGAAAATGCAATGCTGCATGATCAAGTAAGTATGCTAATGAGCATGCTGGAAAATGAAGGAGCTGATGGCTCAGATGAACCTTAA

mRNA sequence

ATGTCCGAAGATTCGGCGAAGTTCTTCCCCGAATTCTCTCCAATGGCGCGCGATAATTCCGGTAAGCTAGATAGGATTCTGGAAGGCTTTTCTCCGGCGTCGGCTCCTCGAATTCAGTGGAAATCTCGCCGGAGATCAGCTACCGAGAGGATCTTAGACAACATAACTCAAGATCATGATGCTGCTGACAAAACATCCGACAAACACGAACAACCTCAGCCCCCCAAAACACTCTTCCCCGACCTCTCCGACCGTCGAAAGGCCCTCTTTGAGCCTTTAGAATCCGTCAAAAACATCAATGGCCGCAGACCATCAGCTGAATCCTTACTCCCTCCACCCGACTTCGACGCCACCGCATATCCCCGAGGCTGGCTGATCGGAAAGAAGCGAAAACTCGTCAATGTCGACGACCGAGAAATCGGCGGTCTGAATGAGCAGCTCGACGAGGACGCGCGCTGCTTAGAACATCTTCAAATTCAACTTCTACAAGAGAAGAGCAAAAGATCAGAGGTCGAGAGGGAAAATGCAATGCTGCATGATCAAGTAAGTATGCTAATGAGCATGCTGGAAAATGAAGGAGCTGATGGCTCAGATGAACCTTAA

Coding sequence (CDS)

ATGTCCGAAGATTCGGCGAAGTTCTTCCCCGAATTCTCTCCAATGGCGCGCGATAATTCCGGTAAGCTAGATAGGATTCTGGAAGGCTTTTCTCCGGCGTCGGCTCCTCGAATTCAGTGGAAATCTCGCCGGAGATCAGCTACCGAGAGGATCTTAGACAACATAACTCAAGATCATGATGCTGCTGACAAAACATCCGACAAACACGAACAACCTCAGCCCCCCAAAACACTCTTCCCCGACCTCTCCGACCGTCGAAAGGCCCTCTTTGAGCCTTTAGAATCCGTCAAAAACATCAATGGCCGCAGACCATCAGCTGAATCCTTACTCCCTCCACCCGACTTCGACGCCACCGCATATCCCCGAGGCTGGCTGATCGGAAAGAAGCGAAAACTCGTCAATGTCGACGACCGAGAAATCGGCGGTCTGAATGAGCAGCTCGACGAGGACGCGCGCTGCTTAGAACATCTTCAAATTCAACTTCTACAAGAGAAGAGCAAAAGATCAGAGGTCGAGAGGGAAAATGCAATGCTGCATGATCAAGTAAGTATGCTAATGAGCATGCTGGAAAATGAAGGAGCTGATGGCTCAGATGAACCTTAA

Protein sequence

MSEDSAKFFPEFSPMARDNSGKLDRILEGFSPASAPRIQWKSRRRSATERILDNITQDHDAADKTSDKHEQPQPPKTLFPDLSDRRKALFEPLESVKNINGRRPSAESLLPPPDFDATAYPRGWLIGKKRKLVNVDDREIGGLNEQLDEDARCLEHLQIQLLQEKSKRSEVERENAMLHDQVSMLMSMLENEGADGSDEP

Homology

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BLAST of Cp4.1LG17g08560 vs. ExPASy Swiss-Prot
Match: B8AE37 (Protein HEADING DATE REPRESSOR 1 OS=Oryza sativa subsp. indica OX=39946 GN=HDR1 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 6.9e-38
Identity = 104/207 (50.24%), Postives = 127/207 (61.35%), Query Frame = 0


Query: 32  PASA--PRIQWKSRRRSAT---------------ERILDNITQDH-----DAADKTSDKH 91
           PASA  PRI WKSRRRSA+               +  L+N   +      DA   ++D  
Sbjct: 4   PASADPPRIFWKSRRRSASANGRSLQQELNKEAADEQLNNQAHEEAMKIDDANAVSTDDD 63

Query: 92  EQPQPPKTLFPDLSDRRKALFEPLESVKNINGRRPSAESLLPPPDFDATAYPRGWLIGKK 151
             P P      +LS++RKALFEPLE    ING+R SAE LLPPPDF+  +YP+GWL+GKK
Sbjct: 64  VHPDPK----ANLSEKRKALFEPLEP---INGKRSSAEMLLPPPDFEPASYPKGWLVGKK 123

Query: 152 RKLVNVD----------------DREIGGLNEQLDEDARCLEHLQIQLLQEKSKRSEVER 200
           RKLVNVD                DREI GLNEQL+ED+R LE LQ QL  E+ KR+E+E+
Sbjct: 124 RKLVNVDVVESMRRIAIQEMNRKDREINGLNEQLEEDSRVLELLQKQLADERKKRTEIEK 183

[Close]

BLAST of Cp4.1LG17g08560 vs. ExPASy Swiss-Prot
Match: Q6K678 (Protein HEADING DATE REPRESSOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR1 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 6.9e-38
Identity = 104/207 (50.24%), Postives = 127/207 (61.35%), Query Frame = 0


Query: 32  PASA--PRIQWKSRRRSAT---------------ERILDNITQDH-----DAADKTSDKH 91
           PASA  PRI WKSRRRSA+               +  L+N   +      DA   ++D  
Sbjct: 4   PASADPPRIFWKSRRRSASANGRSLQQELNKEAADEQLNNQAHEEAMKIDDANAVSTDDD 63

Query: 92  EQPQPPKTLFPDLSDRRKALFEPLESVKNINGRRPSAESLLPPPDFDATAYPRGWLIGKK 151
             P P      +LS++RKALFEPLE    ING+R SAE LLPPPDF+  +YP+GWL+GKK
Sbjct: 64  VHPDPK----ANLSEKRKALFEPLEP---INGKRSSAEMLLPPPDFEPASYPKGWLVGKK 123

Query: 152 RKLVNVD----------------DREIGGLNEQLDEDARCLEHLQIQLLQEKSKRSEVER 200
           RKLVNVD                DREI GLNEQL+ED+R LE LQ QL  E+ KR+E+E+
Sbjct: 124 RKLVNVDVVESMRRIAIQEMNRKDREINGLNEQLEEDSRVLELLQKQLADERKKRTEIEK 183

[Close]

BLAST of Cp4.1LG17g08560 vs. NCBI nr
Match: XP_023515206.1 (protein HEADING DATE REPRESSOR 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 385 bits (989), Expect = 9.34e-134
Identity = 199/215 (92.56%), Postives = 199/215 (92.56%), Query Frame = 0


Query: 2   SEDSAKFFPEFSPMARDNSGKLDRILEGFSPASAPRIQWKSRRRSATERILDNITQDHDA 61
           SEDSAKFFPEFSPMARDNSGKLDRILEGFSPASAPRIQWKSRRRSATERILDNITQDHDA
Sbjct: 45  SEDSAKFFPEFSPMARDNSGKLDRILEGFSPASAPRIQWKSRRRSATERILDNITQDHDA 104

Query: 62  ADKTSDKHEQPQPPKTLFPDLSDRRKALFEPLESVKNINGRRPSAESLLPPPDFDATAYP 121
           ADKTSDKHEQPQPPKTLFPDLSDRRKALFEPLESVKNINGRRPSAESLLPPPDFDATAYP
Sbjct: 105 ADKTSDKHEQPQPPKTLFPDLSDRRKALFEPLESVKNINGRRPSAESLLPPPDFDATAYP 164

Query: 122 RGWLIGKKRKLVNVD----------------DREIGGLNEQLDEDARCLEHLQIQLLQEK 181
           RGWLIGKKRKLVNVD                DREIGGLNEQLDEDARCLEHLQIQLLQEK
Sbjct: 165 RGWLIGKKRKLVNVDVVESMRRIAIQEMNRKDREIGGLNEQLDEDARCLEHLQIQLLQEK 224

Query: 182 SKRSEVERENAMLHDQVSMLMSMLENEGADGSDEP 200
           SKRSEVERENAMLHDQVSMLMSMLENEGADGSDEP
Sbjct: 225 SKRSEVERENAMLHDQVSMLMSMLENEGADGSDEP 259

[Close]

BLAST of Cp4.1LG17g08560 vs. NCBI nr
Match: XP_023004210.1 (protein HEADING DATE REPRESSOR 1 [Cucurbita maxima])

HSP 1 Score: 374 bits (961), Expect = 4.29e-129
Identity = 193/215 (89.77%), Postives = 195/215 (90.70%), Query Frame = 0


Query: 2   SEDSAKFFPEFSPMARDNSGKLDRILEGFSPASAPRIQWKSRRRSATERILDNITQDHDA 61
           SEDSAKFFPEFSPMA DNSGKLDRILEGFSPASAPRIQWKSRRRSAT RILDNITQDHDA
Sbjct: 71  SEDSAKFFPEFSPMASDNSGKLDRILEGFSPASAPRIQWKSRRRSATGRILDNITQDHDA 130

Query: 62  ADKTSDKHEQPQPPKTLFPDLSDRRKALFEPLESVKNINGRRPSAESLLPPPDFDATAYP 121
           ADKTSDKHE+PQPPKTLFPDLSDRRKALFEPLES+KNINGRRPSAESLLPPPDFDATAYP
Sbjct: 131 ADKTSDKHEEPQPPKTLFPDLSDRRKALFEPLESIKNINGRRPSAESLLPPPDFDATAYP 190

Query: 122 RGWLIGKKRKLVNVD----------------DREIGGLNEQLDEDARCLEHLQIQLLQEK 181
           RGWLIGKKRKLVNVD                DREI GLNEQLDEDARCLEHLQIQLLQEK
Sbjct: 191 RGWLIGKKRKLVNVDVVESMRRIAIQEMNRKDREINGLNEQLDEDARCLEHLQIQLLQEK 250

Query: 182 SKRSEVERENAMLHDQVSMLMSMLENEGADGSDEP 200
           SKRSEVERENAMLHDQVSMLMSMLENEGADG DEP
Sbjct: 251 SKRSEVERENAMLHDQVSMLMSMLENEGADGPDEP 285

[Close]

BLAST of Cp4.1LG17g08560 vs. NCBI nr
Match: KAG6593354.1 (Protein HEADING DATE REPRESSOR 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 372 bits (956), Expect = 1.57e-128
Identity = 194/215 (90.23%), Postives = 196/215 (91.16%), Query Frame = 0


Query: 2   SEDSAKFFPEFSPMARDNSGKLDRILEGFSPASAPRIQWKSRRRSATERILDNITQDHDA 61
           SEDSAKFFPEFSPMARDNSGKLDRILEGFSPASAPRIQWKSRRRSAT RILDNITQDHDA
Sbjct: 59  SEDSAKFFPEFSPMARDNSGKLDRILEGFSPASAPRIQWKSRRRSATGRILDNITQDHDA 118

Query: 62  ADKTSDKHEQPQPPKTLFPDLSDRRKALFEPLESVKNINGRRPSAESLLPPPDFDATAYP 121
           ADKTSDKHE+PQPPKTLFPDLSDRRKALFEPLES+KNINGRRPSAESLLPPPDFDATAYP
Sbjct: 119 ADKTSDKHEEPQPPKTLFPDLSDRRKALFEPLESIKNINGRRPSAESLLPPPDFDATAYP 178

Query: 122 RGWLIGKKRKLVNVD----------------DREIGGLNEQLDEDARCLEHLQIQLLQEK 181
           RGWLIGKKRKLVNVD                DREI GLNEQLDEDARCLEHLQIQLLQEK
Sbjct: 179 RGWLIGKKRKLVNVDVVESMRRIAIQEMNRKDREINGLNEQLDEDARCLEHLQIQLLQEK 238

Query: 182 SKRSEVERENAMLHDQVSMLMSMLENEGADGSDEP 200
           SKRSEVERENAMLHDQVSMLMSMLEN GADGSDEP
Sbjct: 239 SKRSEVERENAMLHDQVSMLMSMLEN-GADGSDEP 272

[Close]

BLAST of Cp4.1LG17g08560 vs. NCBI nr
Match: KAG7025699.1 (Protein HEADING DATE REPRESSOR 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 362 bits (929), Expect = 9.78e-126
Identity = 181/186 (97.31%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 15  MARDNSGKLDRILEGFSPASAPRIQWKSRRRSATERILDNITQDHDAADKTSDKHEQPQP 74
           MARDNSGKLDRILEGFSPASAPRIQWKSRRRSAT RILDNITQDHDAADKTSDKHE+PQP
Sbjct: 1   MARDNSGKLDRILEGFSPASAPRIQWKSRRRSATGRILDNITQDHDAADKTSDKHEEPQP 60

Query: 75  PKTLFPDLSDRRKALFEPLESVKNINGRRPSAESLLPPPDFDATAYPRGWLIGKKRKLVN 134
           PKTLFPDLSDRRKALFEPLES+KNINGRRPSAESLLPPPDFDATAYPRGWLIGKKRKLVN
Sbjct: 61  PKTLFPDLSDRRKALFEPLESIKNINGRRPSAESLLPPPDFDATAYPRGWLIGKKRKLVN 120

Query: 135 VDDREIGGLNEQLDEDARCLEHLQIQLLQEKSKRSEVERENAMLHDQVSMLMSMLENEGA 194
           VDDREI GLNEQLDEDARCLEHLQIQLLQEKSKRSE+ERENAMLHDQVSMLMSMLENEGA
Sbjct: 121 VDDREIDGLNEQLDEDARCLEHLQIQLLQEKSKRSEIERENAMLHDQVSMLMSMLENEGA 180

Query: 195 DGSDEP 200
           DGSDEP
Sbjct: 181 DGSDEP 186

[Close]

BLAST of Cp4.1LG17g08560 vs. NCBI nr
Match: XP_022959741.1 (protein HEADING DATE REPRESSOR 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 351 bits (900), Expect = 4.53e-121
Identity = 181/202 (89.60%), Postives = 184/202 (91.09%), Query Frame = 0


Query: 15  MARDNSGKLDRILEGFSPASAPRIQWKSRRRSATERILDNITQDHDAADKTSDKHEQPQP 74
           MARDNSGKLDRILEGFSPASAPRIQWKSRRRSAT RILDNITQDHDAADKTSDKH++PQP
Sbjct: 1   MARDNSGKLDRILEGFSPASAPRIQWKSRRRSATGRILDNITQDHDAADKTSDKHQEPQP 60

Query: 75  PKTLFPDLSDRRKALFEPLESVKNINGRRPSAESLLPPPDFDATAYPRGWLIGKKRKLVN 134
           PKTLFPDLSDRRKALFEPLES+KNINGRRPSAESLLPPPDFDATAYPRGWLIGKKRKLVN
Sbjct: 61  PKTLFPDLSDRRKALFEPLESIKNINGRRPSAESLLPPPDFDATAYPRGWLIGKKRKLVN 120

Query: 135 VD----------------DREIGGLNEQLDEDARCLEHLQIQLLQEKSKRSEVERENAML 194
           VD                DREI GLNEQLDEDARCLEHLQIQLLQEKSKRSEVERENAML
Sbjct: 121 VDVVESMRRIAIQEMNRKDREIDGLNEQLDEDARCLEHLQIQLLQEKSKRSEVERENAML 180

Query: 195 HDQVSMLMSMLENEGADGSDEP 200
           HDQVSMLMSMLENEGADGSDEP
Sbjct: 181 HDQVSMLMSMLENEGADGSDEP 202

[Close]

BLAST of Cp4.1LG17g08560 vs. ExPASy TrEMBL
Match: A0A6J1KTY5 (protein HEADING DATE REPRESSOR 1 OS=Cucurbita maxima OX=3661 GN=LOC111497606 PE=4 SV=1)

HSP 1 Score: 374 bits (961), Expect = 2.08e-129
Identity = 193/215 (89.77%), Postives = 195/215 (90.70%), Query Frame = 0


Query: 2   SEDSAKFFPEFSPMARDNSGKLDRILEGFSPASAPRIQWKSRRRSATERILDNITQDHDA 61
           SEDSAKFFPEFSPMA DNSGKLDRILEGFSPASAPRIQWKSRRRSAT RILDNITQDHDA
Sbjct: 71  SEDSAKFFPEFSPMASDNSGKLDRILEGFSPASAPRIQWKSRRRSATGRILDNITQDHDA 130

Query: 62  ADKTSDKHEQPQPPKTLFPDLSDRRKALFEPLESVKNINGRRPSAESLLPPPDFDATAYP 121
           ADKTSDKHE+PQPPKTLFPDLSDRRKALFEPLES+KNINGRRPSAESLLPPPDFDATAYP
Sbjct: 131 ADKTSDKHEEPQPPKTLFPDLSDRRKALFEPLESIKNINGRRPSAESLLPPPDFDATAYP 190

Query: 122 RGWLIGKKRKLVNVD----------------DREIGGLNEQLDEDARCLEHLQIQLLQEK 181
           RGWLIGKKRKLVNVD                DREI GLNEQLDEDARCLEHLQIQLLQEK
Sbjct: 191 RGWLIGKKRKLVNVDVVESMRRIAIQEMNRKDREINGLNEQLDEDARCLEHLQIQLLQEK 250

Query: 182 SKRSEVERENAMLHDQVSMLMSMLENEGADGSDEP 200
           SKRSEVERENAMLHDQVSMLMSMLENEGADG DEP
Sbjct: 251 SKRSEVERENAMLHDQVSMLMSMLENEGADGPDEP 285

[Close]

BLAST of Cp4.1LG17g08560 vs. ExPASy TrEMBL
Match: A0A6J1H5Q2 (protein HEADING DATE REPRESSOR 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460721 PE=4 SV=1)

HSP 1 Score: 351 bits (900), Expect = 2.20e-121
Identity = 181/202 (89.60%), Postives = 184/202 (91.09%), Query Frame = 0


Query: 15  MARDNSGKLDRILEGFSPASAPRIQWKSRRRSATERILDNITQDHDAADKTSDKHEQPQP 74
           MARDNSGKLDRILEGFSPASAPRIQWKSRRRSAT RILDNITQDHDAADKTSDKH++PQP
Sbjct: 1   MARDNSGKLDRILEGFSPASAPRIQWKSRRRSATGRILDNITQDHDAADKTSDKHQEPQP 60

Query: 75  PKTLFPDLSDRRKALFEPLESVKNINGRRPSAESLLPPPDFDATAYPRGWLIGKKRKLVN 134
           PKTLFPDLSDRRKALFEPLES+KNINGRRPSAESLLPPPDFDATAYPRGWLIGKKRKLVN
Sbjct: 61  PKTLFPDLSDRRKALFEPLESIKNINGRRPSAESLLPPPDFDATAYPRGWLIGKKRKLVN 120

Query: 135 VD----------------DREIGGLNEQLDEDARCLEHLQIQLLQEKSKRSEVERENAML 194
           VD                DREI GLNEQLDEDARCLEHLQIQLLQEKSKRSEVERENAML
Sbjct: 121 VDVVESMRRIAIQEMNRKDREIDGLNEQLDEDARCLEHLQIQLLQEKSKRSEVERENAML 180

Query: 195 HDQVSMLMSMLENEGADGSDEP 200
           HDQVSMLMSMLENEGADGSDEP
Sbjct: 181 HDQVSMLMSMLENEGADGSDEP 202

[Close]

BLAST of Cp4.1LG17g08560 vs. ExPASy TrEMBL
Match: A0A6J1D3E7 (protein HEADING DATE REPRESSOR 1 OS=Momordica charantia OX=3673 GN=LOC111016948 PE=4 SV=1)

HSP 1 Score: 294 bits (752), Expect = 1.02e-98
Identity = 154/210 (73.33%), Postives = 171/210 (81.43%), Query Frame = 0


Query: 15  MARDNSGKLDRILEGFSPASAPRIQWKSRRRSATERILDNITQDHDAADKTSDKHEQPQP 74
           M RDNSGK+DRILEGFSPASAPRI WKSRRRSA+ R LD +T+DHD+A+K  DK E+P  
Sbjct: 1   MERDNSGKIDRILEGFSPASAPRIHWKSRRRSASGRNLDKVTEDHDSANKIWDKQEEPHD 60

Query: 75  P--------KTLFPDLSDRRKALFEPLESVKNINGRRPSAESLLPPPDFDATAYPRGWLI 134
                    + + P+LS+RR+ALFEPLE VKNINGRRPSAESLLPPPDFDATAYPRGWLI
Sbjct: 61  KDKTQDLEAEVVPPELSERRRALFEPLEPVKNINGRRPSAESLLPPPDFDATAYPRGWLI 120

Query: 135 GKKRKLVNVD----------------DREIGGLNEQLDEDARCLEHLQIQLLQEKSKRSE 194
           GKKRKLVNVD                DREI GLNEQLDEDARCLEHLQ+QL+QEKSKRSE
Sbjct: 121 GKKRKLVNVDVVESMRRIAVQEMNRKDREIDGLNEQLDEDARCLEHLQLQLVQEKSKRSE 180

Query: 195 VERENAMLHDQVSMLMSMLENEGADGSDEP 200
           VERENAMLHDQ++MLM+MLENEGADGSDEP
Sbjct: 181 VERENAMLHDQINMLMNMLENEGADGSDEP 210

[Close]

BLAST of Cp4.1LG17g08560 vs. ExPASy TrEMBL
Match: A0A6J1H766 (protein HEADING DATE REPRESSOR 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460721 PE=4 SV=1)

HSP 1 Score: 287 bits (735), Expect = 2.43e-96
Identity = 149/171 (87.13%), Postives = 153/171 (89.47%), Query Frame = 0


Query: 46  SATERILDNITQDHDAADKTSDKHEQPQPPKTLFPDLSDRRKALFEPLESVKNINGRRPS 105
           +AT RILDNITQDHDAADKTSDKH++PQPPKTLFPDLSDRRKALFEPLES+KNINGRRPS
Sbjct: 26  TATGRILDNITQDHDAADKTSDKHQEPQPPKTLFPDLSDRRKALFEPLESIKNINGRRPS 85

Query: 106 AESLLPPPDFDATAYPRGWLIGKKRKLVNVD----------------DREIGGLNEQLDE 165
           AESLLPPPDFDATAYPRGWLIGKKRKLVNVD                DREI GLNEQLDE
Sbjct: 86  AESLLPPPDFDATAYPRGWLIGKKRKLVNVDVVESMRRIAIQEMNRKDREIDGLNEQLDE 145

Query: 166 DARCLEHLQIQLLQEKSKRSEVERENAMLHDQVSMLMSMLENEGADGSDEP 200
           DARCLEHLQIQLLQEKSKRSEVERENAMLHDQVSMLMSMLENEGADGSDEP
Sbjct: 146 DARCLEHLQIQLLQEKSKRSEVERENAMLHDQVSMLMSMLENEGADGSDEP 196

[Close]

BLAST of Cp4.1LG17g08560 vs. ExPASy TrEMBL
Match: A0A5A7UUH2 (Protein HEADING DATE REPRESSOR 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001460 PE=4 SV=1)

HSP 1 Score: 283 bits (723), Expect = 5.76e-94
Identity = 155/221 (70.14%), Postives = 170/221 (76.92%), Query Frame = 0


Query: 5   SAKFFPEF--SPMARDNSGKLDRILEGFSPASAPRIQWKSRRRSATERILDNITQDHDAA 64
           S K  P    S M  ++SGK+DRILEGFSPASAPRIQW SRRRSA+ R L   T+D D+A
Sbjct: 13  SGKALPRIPSSSMEHNHSGKIDRILEGFSPASAPRIQWNSRRRSASGRNLYKETEDQDSA 72

Query: 65  DKTSDKHEQP-------QPPKTLFPDLSDRRKALFEPLESVKNINGRRPSAESLLPPPDF 124
           +KT DK E+        Q   T+ P+LS+RRKALFEPLE V+NINGRRPSAESLLPPPDF
Sbjct: 73  NKTCDKQEESPANDNISQDTDTVPPELSERRKALFEPLEPVRNINGRRPSAESLLPPPDF 132

Query: 125 DATAYPRGWLIGKKRKLVNVD----------------DREIGGLNEQLDEDARCLEHLQI 184
           D T YPRGWLIGKKRKLVNVD                DREI GLNEQLDEDARCLEHLQI
Sbjct: 133 DETTYPRGWLIGKKRKLVNVDVVESMRRIAVQEMNRKDREIDGLNEQLDEDARCLEHLQI 192

Query: 185 QLLQEKSKRSEVERENAMLHDQVSMLMSMLENEGADGSDEP 200
           QLLQEKSKRSEVERENAMLHDQ++MLMSML+NEGADGSDEP
Sbjct: 193 QLLQEKSKRSEVERENAMLHDQINMLMSMLDNEGADGSDEP 233

[Close]

BLAST of Cp4.1LG17g08560 vs. TAIR 10
Match: AT1G80940.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 188.0 bits (476), Expect = 7.6e-48
Identity = 102/198 (51.52%), Postives = 138/198 (69.70%), Query Frame = 0


Query: 24  DRILEGFSPASAPRIQWKSRRRSA---TERILDNITQ-DHDAADKTSDKHEQPQPPKTLF 83
           D  + GF P S  +I WKSR+RSA    ++  + +T+   +  + T+   E+   P T  
Sbjct: 16  DGFVGGFFPVSTTKIAWKSRKRSALLNLDKAPEAVTEVTPEKNEITAMDTEKVGEPMTTT 75

Query: 84  PDLSDRRKALFEPLESVKNINGRRP-SAESLLPPPDFDATAYPRGWLIGKKRKLVNVD-- 143
           P LS++RKALFEPLE + N+NG+RP +A+SLLPPPDF+   YP+GWLIGKKRKLVNVD  
Sbjct: 76  PLLSEKRKALFEPLEPITNLNGKRPTAADSLLPPPDFETANYPKGWLIGKKRKLVNVDVV 135

Query: 144 --------------DREIGGLNEQLDEDARCLEHLQIQLLQEKSKRSEVERENAMLHDQV 201
                         DREI GLNEQL+ED+RCLEHLQ+QLLQE+SKR+E+EREN ML +QV
Sbjct: 136 ESMRRIAVQEMNRKDREIDGLNEQLEEDSRCLEHLQLQLLQERSKRTEIERENTMLKEQV 195

[Close]

BLAST of Cp4.1LG17g08560 vs. TAIR 10
Match: AT1G80940.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 111.7 bits (278), Expect = 6.9e-25
Identity = 60/118 (50.85%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 24  DRILEGFSPASAPRIQWKSRRRSA---TERILDNITQ-DHDAADKTSDKHEQPQPPKTLF 83
           D  + GF P S  +I WKSR+RSA    ++  + +T+   +  + T+   E+   P T  
Sbjct: 16  DGFVGGFFPVSTTKIAWKSRKRSALLNLDKAPEAVTEVTPEKNEITAMDTEKVGEPMTTT 75

Query: 84  PDLSDRRKALFEPLESVKNINGRRP-SAESLLPPPDFDATAYPRGWLIGKKRKLVNVD 137
           P LS++RKALFEPLE + N+NG+RP +A+SLLPPPDF+   YP+GWLIGKKRKLVNVD
Sbjct: 76  PLLSEKRKALFEPLEPITNLNGKRPTAADSLLPPPDFETANYPKGWLIGKKRKLVNVD 133

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g08560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8AE37	6.9e-38	50.24	Protein HEADING DATE REPRESSOR 1 OS=Oryza sativa subsp. indica OX=39946 GN=HDR1 ...	[more]
Q6K678	6.9e-38	50.24	Protein HEADING DATE REPRESSOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR...	[more]

BLAST of Cp4.1LG17g08560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515206.1	9.34e-134	92.56	protein HEADING DATE REPRESSOR 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023004210.1	4.29e-129	89.77	protein HEADING DATE REPRESSOR 1 [Cucurbita maxima]	[more]
KAG6593354.1	1.57e-128	90.23	Protein HEADING DATE REPRESSOR 1, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7025699.1	9.78e-126	97.31	Protein HEADING DATE REPRESSOR 1, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022959741.1	4.53e-121	89.60	protein HEADING DATE REPRESSOR 1-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG17g08560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTY5	2.08e-129	89.77	protein HEADING DATE REPRESSOR 1 OS=Cucurbita maxima OX=3661 GN=LOC111497606 PE=...	[more]
A0A6J1H5Q2	2.20e-121	89.60	protein HEADING DATE REPRESSOR 1-like isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1D3E7	1.02e-98	73.33	protein HEADING DATE REPRESSOR 1 OS=Momordica charantia OX=3673 GN=LOC111016948 ...	[more]
A0A6J1H766	2.43e-96	87.13	protein HEADING DATE REPRESSOR 1-like isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A5A7UUH2	5.76e-94	70.14	Protein HEADING DATE REPRESSOR 1-like isoform X2 OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Cp4.1LG17g08560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80940.1	7.6e-48	51.52	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT1G80940.2	6.9e-25	50.85	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 154..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..83
None	No IPR available	PANTHER	PTHR37205:SF1	F23A5.30 PROTEIN	coord: 137..195 coord: 18..136
IPR038864	Protein heading date repressor 1	PANTHER	PTHR37205	F23A5.30 PROTEIN	coord: 137..195 coord: 18..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g08560.1	Cp4.1LG17g08560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009909	regulation of flower development