Cp4.1LG17g08270 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g08270
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L6
Location	Cp4.1LG17: 5401552 .. 5403430 (+)
RNA-Seq Expression	Cp4.1LG17g08270
Synteny	Cp4.1LG17g08270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTGGATGATTAGGCTTTCTGGCGGTAGTTTCTTTCTCGTTGAAGAAGAGCAGCAGATTCTCGCAGGGAGACGGTAATGGCGCCCAAAACCCCTAGAGTTACCAGAAACCCGGATCTAATCCGAGGCGTCGGTAAGTACTCGAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAACGGCGGAGTGTTCCCTCGTCATGATGCCCAGCCAAAAGCTGATGCCGCAGTCGAGAAGCCGCCGAAGTTTTATCCTGCCGATGATGTGAAGAAGCCCCTTGTTAACAAGCGCAAGGCCAGACTCACGAAGCTAAGGTATGGCGACTTTGTTATCGCTCAATTTATTATTGTTATTATTTTGTTCTGTTTGATTTTTAGTGCTTTGAGGTCTTACTCTTATTCCGGTCGAGAAGCTTTGGGATTTGTAGATTGAGGTCTTACTTTAATTTTGTTCTATTTGTGATTCTAGAGCCAGCATTACTCCCGGTACCGTGTTGATTATCCTTGCTGGGAGATTCAAGGGGAAGAGAGTTGTGTTTTTGAAACAGCTTCCATCTGGGTTGCTTCTGGTCACTGGTGAGTTCATTCAATTGTTTGGCGAAGTATTAAGTCATTTCTTTCTGTCATCTCGAATTATTTCTTCTACGTATTGTTTGCATTTTAGAAGTTTTCCTGTGATTTAGTTTCCTTTTTCTTGCGATTTAATTTGTTTTGCTGTCCTCTTTAATGGAAACGTTTGCCTTTACTTCGTTCTGTGAGTGCATTTGCTGAAGAACTTATTCTATTGCATACTTTCGTTAAAAAAATACCCAATGTTGATTAATTCTTTCTATTGCTCGTGATTTCAAAATGTATTCAGGCAAATAATTTAAGCTATATCCCTTACCTGTTTACCTGGAATTTGAACTTTTTAATCCTGAATCTTGGATTTAATGTTCCATTCGAGTAGTCAATGTGAAACGCCACCAGAAGTCAGCTCATGTTTTCTTATGAAAGTTGGTGTGCTTTTTAAGCATTAATGTAACATGTCCTTTATGACTATAGGGCCTTTCAAGATTAATGGTGTTCCTCTAAGACGGGTGAACCAATCATACGTCATTGCAACCTCCACCAAAGTAGAAATCTCTGGAGTTAACACCGAGAAGTTCGACGACAAGTATTTCTCCAAGGAAGTTCAGAAGAAGAAGAAGAAGAGTGAAGGCGAGTTCTTCGAGGCGGAGAAAGAGGTACCAGGACCTGCATTGCACTTCTATGATGCCCCATTGTCGTAGTTGTTTTAGCTGTCCTAATTATTTGATTCATACTTCTTATTCTAGGAGAAAAGTGCCCTCCCAGCTGACAAGAAGGATGACCAGAAAGCTGTGGATACACCATTGATAAAGTCGATCGAGGGTGTTCCGGAGTTGAAGGCGTACTTGGCAGCAAGATTTTCTCTCAAGTCTGGAATGAAACCTCATGAGCTTGCCTTTTAGATAAGGGATTTGTTTGTTTTTTGTTCATCTGAACTTGTTCACGACTTGTTACAATAGTTGCCTGTCCCAATTTTTTATTCGAAATGGAGATTCCATGGTTCACAATTCCTCTCTTTCTTTTTGGAATACATACATATATACATACATATATATATGTAAGTATGTATGTATGTATGTATGTTGCATGATTTGTTTAATGTTCAAATAGGTTCCTTTGATTGGATTTCTTATGAAATCTGACTATTAAGAAGTCTTTTTTGAAAATTATAGTACCTCCCATTATAACGTTGGTAGAAGTTGATGTCATAGATATCTCTAGTGTTTGAAACTTGTGGCTTTTTTTTTTTTGACATCATTTTGAACCATTTCAATTTGAGTTATGACCTTGATAGTG

mRNA sequence

TGTTGGATGATTAGGCTTTCTGGCGGTAGTTTCTTTCTCGTTGAAGAAGAGCAGCAGATTCTCGCAGGGAGACGGTAATGGCGCCCAAAACCCCTAGAGTTACCAGAAACCCGGATCTAATCCGAGGCGTCGGTAAGTACTCGAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAACGGCGGAGTGTTCCCTCGTCATGATGCCCAGCCAAAAGCTGATGCCGCAGTCGAGAAGCCGCCGAAGTTTTATCCTGCCGATGATGTGAAGAAGCCCCTTGTTAACAAGCGCAAGGCCAGACTCACGAAGCTAAGAGCCAGCATTACTCCCGGTACCGTGTTGATTATCCTTGCTGGGAGATTCAAGGGGAAGAGAGTTGTGTTTTTGAAACAGCTTCCATCTGGGTTGCTTCTGGTCACTGGGCCTTTCAAGATTAATGGTGTTCCTCTAAGACGGGTGAACCAATCATACGTCATTGCAACCTCCACCAAAGTAGAAATCTCTGGAGTTAACACCGAGAAGTTCGACGACAAGTATTTCTCCAAGGAAGTTCAGAAGAAGAAGAAGAAGAGTGAAGGCGAGTTCTTCGAGGCGGAGAAAGAGGAGAAAAGTGCCCTCCCAGCTGACAAGAAGGATGACCAGAAAGCTGTGGATACACCATTGATAAAGTCGATCGAGGGTGTTCCGGAGTTGAAGGCGTACTTGGCAGCAAGATTTTCTCTCAAGTCTGGAATGAAACCTCATGAGCTTGCCTTTTAGATAAGGGATTTGTTTGTTTTTTGTTCATCTGAACTTGTTCACGACTTGTTACAATAGTTGCCTGTCCCAATTTTTTATTCGAAATGGAGATTCCATGGTTCACAATTCCTCTCTTTCTTTTTGGAATACATACATATATACATACATATATATATGTAAGTATGTATGTATGTATGTATGTTGCATGATTTGTTTAATGTTCAAATAGGTTCCTTTGATTGGATTTCTTATGAAATCTGACTATTAAGAAGTCTTTTTTGAAAATTATAGTACCTCCCATTATAACGTTGGTAGAAGTTGATGTCATAGATATCTCTAGTGTTTGAAACTTGTGGCTTTTTTTTTTTTGACATCATTTTGAACCATTTCAATTTGAGTTATGACCTTGATAGTG

Coding sequence (CDS)

ATGGCGCCCAAAACCCCTAGAGTTACCAGAAACCCGGATCTAATCCGAGGCGTCGGTAAGTACTCGAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAACGGCGGAGTGTTCCCTCGTCATGATGCCCAGCCAAAAGCTGATGCCGCAGTCGAGAAGCCGCCGAAGTTTTATCCTGCCGATGATGTGAAGAAGCCCCTTGTTAACAAGCGCAAGGCCAGACTCACGAAGCTAAGAGCCAGCATTACTCCCGGTACCGTGTTGATTATCCTTGCTGGGAGATTCAAGGGGAAGAGAGTTGTGTTTTTGAAACAGCTTCCATCTGGGTTGCTTCTGGTCACTGGGCCTTTCAAGATTAATGGTGTTCCTCTAAGACGGGTGAACCAATCATACGTCATTGCAACCTCCACCAAAGTAGAAATCTCTGGAGTTAACACCGAGAAGTTCGACGACAAGTATTTCTCCAAGGAAGTTCAGAAGAAGAAGAAGAAGAGTGAAGGCGAGTTCTTCGAGGCGGAGAAAGAGGAGAAAAGTGCCCTCCCAGCTGACAAGAAGGATGACCAGAAAGCTGTGGATACACCATTGATAAAGTCGATCGAGGGTGTTCCGGAGTTGAAGGCGTACTTGGCAGCAAGATTTTCTCTCAAGTCTGGAATGAAACCTCATGAGCTTGCCTTTTAG

Protein sequence

MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPKFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF

Homology

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BLAST of Cp4.1LG17g08270 vs. ExPASy Swiss-Prot
Match: Q9FZ76 (60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 8.4e-104
Identity = 191/230 (83.04%), Postives = 206/230 (89.57%), Query Frame = 0


Query: 2   APKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPK 61
           A +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAQPK DA VEKP K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 62  FYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGP 121
           FYPA+DVKKPLVN+RK + TKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGP
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGP 123

Query: 122 FKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEE 181
           FKINGVPLRRVNQ+YVI TSTK++ISGVNTEKFDDKYF K  +KKKKK+EGEFFEAEKEE
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEE 183

Query: 182 KSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 232
           K  +P +KK+DQK VD  LIKSIE VPELK YL ARFSL  GMKPHEL F
Sbjct: 184 KKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

[Close]

BLAST of Cp4.1LG17g08270 vs. ExPASy Swiss-Prot
Match: Q9C9C5 (60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.7e-101
Identity = 189/228 (82.89%), Postives = 203/228 (89.04%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPKFY 63
           +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+ K DA VEKPPKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+ TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKS 183
           INGVPLRRVNQ+YVI TSTKV+ISGV  +KFDDKYF K  +KKKKK+EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 232
            +P  KKDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHEL F
Sbjct: 186 EIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

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BLAST of Cp4.1LG17g08270 vs. ExPASy Swiss-Prot
Match: P34091 (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 1.9e-100
Identity = 184/228 (80.70%), Postives = 204/228 (89.47%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPKFY 63
           + P V+RNP+L+RG+GKYSRSKMYHKRGLWAIKAKNGGVFP+H  +     AVEKPPKFY
Sbjct: 7   RKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFY 66

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PADDVKKPL+NKRK + TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 67  PADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFK 126

Query: 124 INGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKS 183
           +NGVPLRRVNQ+YVIATSTKV+ISGVN EKFDDKYF K+ +KK KK EGEFFEAEK+E +
Sbjct: 127 VNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVN 186

Query: 184 ALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 232
            LP +KKDDQKAVD  L+K+IEGVPELKAYL ARFSLK+GMKPHEL F
Sbjct: 187 VLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234

[Close]

BLAST of Cp4.1LG17g08270 vs. ExPASy Swiss-Prot
Match: Q9C9C6 (60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 3.3e-100
Identity = 187/228 (82.02%), Postives = 201/228 (88.16%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPKFY 63
           +T +V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+ K DA VEKPPKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+  KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKS 183
           INGVPLRRVNQ+YVI TSTKV+ISGV  +KFDDKYF K  +KKKKK+EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 232
            +P  KKDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHEL F
Sbjct: 186 EIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of Cp4.1LG17g08270 vs. ExPASy Swiss-Prot
Match: Q2YGT9 (60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=RPL6 PE=1 SV=3)

HSP 1 Score: 191.8 bits (486), Expect = 8.5e-48
Identity = 113/248 (45.56%), Postives = 155/248 (62.50%), Query Frame = 0


Query: 6   PRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKP------ 65
           P  +RNP L+RG+G+YSRS MY ++ L+  K            + +  A V KP      
Sbjct: 38  PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKN 97

Query: 66  -----------PKFYPADDVKKPLVNKRK----ARLTKLRASITPGTVLIILAGRFKGKR 125
                      P++YP +DV + L++  K      + KLRASITPGT+LIIL GR +GKR
Sbjct: 98  GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKR 157

Query: 126 VVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVEISGVN-TEKFDDKYFSKEV 185
           V+FLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTK++ISGV   E   D YF K+ 
Sbjct: 158 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 217

Query: 186 QKKKKKSEGEFFEAEKEEKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSG 232
            +K +  EGE F+ EK EK  +   +K DQKAVD+ +++ I+ VP+L+ YL + F+L +G
Sbjct: 218 LRKPRHQEGEIFDTEK-EKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNG 277

[Close]

BLAST of Cp4.1LG17g08270 vs. NCBI nr
Match: XP_022959727.1 (60S ribosomal protein L6-1-like [Cucurbita moschata] >XP_023513505.1 60S ribosomal protein L6-1-like [Cucurbita pepo subsp. pepo] >KAG6593324.1 60S ribosomal protein L6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025671.1 60S ribosomal protein L6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 446 bits (1148), Expect = 7.04e-158
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180

Query: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231
           EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF
Sbjct: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231

[Close]

BLAST of Cp4.1LG17g08270 vs. NCBI nr
Match: XP_023004644.1 (60S ribosomal protein L6-1-like [Cucurbita maxima])

HSP 1 Score: 443 bits (1140), Expect = 1.17e-156
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSYVIATSTKVE SGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVEFSGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180

Query: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231
           EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHEL F
Sbjct: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELTF 231

[Close]

BLAST of Cp4.1LG17g08270 vs. NCBI nr
Match: XP_022991926.1 (60S ribosomal protein L6-1-like [Cucurbita maxima])

HSP 1 Score: 428 bits (1101), Expect = 1.03e-150
Identity = 220/231 (95.24%), Postives = 224/231 (96.97%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PKADA  EK P
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSY IATSTKV+ISGVN EKFDDKYFSKEVQKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231
           EKSALPAD+KDDQKAVDTPLIKSIEGVPELKAYLAARFSLK+GMKPHEL F
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Cp4.1LG17g08270 vs. NCBI nr
Match: XP_011659463.1 (60S ribosomal protein L6-1 [Cucumis sativus] >KGN45157.1 hypothetical protein Csa_015877 [Cucumis sativus])

HSP 1 Score: 425 bits (1092), Expect = 2.42e-149
Identity = 218/231 (94.37%), Postives = 223/231 (96.54%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKA A  EKPP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKAAAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKA+LTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSYVIATSTKV+ISGVN+EKFDDKYFSKE QKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNSEKFDDKYFSKEAQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231
           EKSALPA+KKDDQKAVDTPLIKSIE VPELKAYL ARFSLK+GMKPHEL F
Sbjct: 181 EKSALPAEKKDDQKAVDTPLIKSIEAVPELKAYLGARFSLKAGMKPHELVF 231

[Close]

BLAST of Cp4.1LG17g08270 vs. NCBI nr
Match: XP_038896966.1 (60S ribosomal protein L6-1-like [Benincasa hispida])

HSP 1 Score: 425 bits (1092), Expect = 2.42e-149
Identity = 217/231 (93.94%), Postives = 223/231 (96.54%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PKADA  EKPP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPTEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRK +LTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKPKLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSYVIATSTKV+ISGVN+EKFDDKYFSKEVQKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNSEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231
           EKS LPADKKDDQ+AVDTPLIKSIE VPELKAYL ARFSLK+GMKPHEL F
Sbjct: 181 EKSGLPADKKDDQRAVDTPLIKSIEAVPELKAYLGARFSLKAGMKPHELVF 231

[Close]

BLAST of Cp4.1LG17g08270 vs. ExPASy TrEMBL
Match: A0A6J1H5C5 (60S ribosomal protein L6 OS=Cucurbita moschata OX=3662 GN=LOC111460710 PE=3 SV=1)

HSP 1 Score: 446 bits (1148), Expect = 3.41e-158
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180

Query: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231
           EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF
Sbjct: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231

[Close]

BLAST of Cp4.1LG17g08270 vs. ExPASy TrEMBL
Match: A0A6J1KWW3 (60S ribosomal protein L6 OS=Cucurbita maxima OX=3661 GN=LOC111497875 PE=3 SV=1)

HSP 1 Score: 443 bits (1140), Expect = 5.65e-157
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSYVIATSTKVE SGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVEFSGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180

Query: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231
           EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHEL F
Sbjct: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELTF 231

[Close]

BLAST of Cp4.1LG17g08270 vs. ExPASy TrEMBL
Match: A0A6J1JS55 (60S ribosomal protein L6-1-like OS=Cucurbita maxima OX=3661 GN=LOC111488421 PE=3 SV=1)

HSP 1 Score: 428 bits (1101), Expect = 4.99e-151
Identity = 220/231 (95.24%), Postives = 224/231 (96.97%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PKADA  EK P
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSY IATSTKV+ISGVN EKFDDKYFSKEVQKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231
           EKSALPAD+KDDQKAVDTPLIKSIEGVPELKAYLAARFSLK+GMKPHEL F
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Cp4.1LG17g08270 vs. ExPASy TrEMBL
Match: A0A0A0K9V0 (60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_7G428940 PE=3 SV=1)

HSP 1 Score: 425 bits (1092), Expect = 1.17e-149
Identity = 218/231 (94.37%), Postives = 223/231 (96.54%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKA A  EKPP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKAAAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKA+LTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSYVIATSTKV+ISGVN+EKFDDKYFSKE QKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNSEKFDDKYFSKEAQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231
           EKSALPA+KKDDQKAVDTPLIKSIE VPELKAYL ARFSLK+GMKPHEL F
Sbjct: 181 EKSALPAEKKDDQKAVDTPLIKSIEAVPELKAYLGARFSLKAGMKPHELVF 231

[Close]

BLAST of Cp4.1LG17g08270 vs. ExPASy TrEMBL
Match: A0A6J1GSP4 (60S ribosomal protein L6-3-like OS=Cucurbita moschata OX=3662 GN=LOC111456610 PE=3 SV=1)

HSP 1 Score: 423 bits (1088), Expect = 4.78e-149
Identity = 218/231 (94.37%), Postives = 223/231 (96.54%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+ KADA  EK P
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSY IATSTKV+ISGVN EKFDDKYFSKEVQKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231
           EKSALPAD+KDDQKAVDTPLIKSI+GVPELKAYLAARFSLK+GMKPHEL F
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIDGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Cp4.1LG17g08270 vs. TAIR 10
Match: AT1G18540.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 377.9 bits (969), Expect = 6.0e-105
Identity = 191/230 (83.04%), Postives = 206/230 (89.57%), Query Frame = 0


Query: 2   APKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPK 61
           A +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAQPK DA VEKP K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 62  FYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGP 121
           FYPA+DVKKPLVN+RK + TKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGP
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGP 123

Query: 122 FKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEE 181
           FKINGVPLRRVNQ+YVI TSTK++ISGVNTEKFDDKYF K  +KKKKK+EGEFFEAEKEE
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEE 183

Query: 182 KSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 232
           K  +P +KK+DQK VD  LIKSIE VPELK YL ARFSL  GMKPHEL F
Sbjct: 184 KKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

[Close]

BLAST of Cp4.1LG17g08270 vs. TAIR 10
Match: AT1G74050.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 370.2 bits (949), Expect = 1.2e-102
Identity = 189/228 (82.89%), Postives = 203/228 (89.04%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPKFY 63
           +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+ K DA VEKPPKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+ TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKS 183
           INGVPLRRVNQ+YVI TSTKV+ISGV  +KFDDKYF K  +KKKKK+EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 232
            +P  KKDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHEL F
Sbjct: 186 EIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of Cp4.1LG17g08270 vs. TAIR 10
Match: AT1G74060.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 365.9 bits (938), Expect = 2.3e-101
Identity = 187/228 (82.02%), Postives = 201/228 (88.16%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPKFY 63
           +T +V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+ K DA VEKPPKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+  KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKS 183
           INGVPLRRVNQ+YVI TSTKV+ISGV  +KFDDKYF K  +KKKKK+EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 232
            +P  KKDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHEL F
Sbjct: 186 EIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g08270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ76	8.4e-104	83.04	60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1	[more]
Q9C9C5	1.7e-101	82.89	60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1	[more]
P34091	1.9e-100	80.70	60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 S...	[more]
Q9C9C6	3.3e-100	82.02	60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1	[more]
Q2YGT9	8.5e-48	45.56	60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=RPL6 PE=1 SV=3	[more]

BLAST of Cp4.1LG17g08270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959727.1	7.04e-158	100.00	60S ribosomal protein L6-1-like [Cucurbita moschata] >XP_023513505.1 60S ribosom...	[more]
XP_023004644.1	1.17e-156	99.13	60S ribosomal protein L6-1-like [Cucurbita maxima]	[more]
XP_022991926.1	1.03e-150	95.24	60S ribosomal protein L6-1-like [Cucurbita maxima]	[more]
XP_011659463.1	2.42e-149	94.37	60S ribosomal protein L6-1 [Cucumis sativus] >KGN45157.1 hypothetical protein Cs...	[more]
XP_038896966.1	2.42e-149	93.94	60S ribosomal protein L6-1-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG17g08270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H5C5	3.41e-158	100.00	60S ribosomal protein L6 OS=Cucurbita moschata OX=3662 GN=LOC111460710 PE=3 SV=1	[more]
A0A6J1KWW3	5.65e-157	99.13	60S ribosomal protein L6 OS=Cucurbita maxima OX=3661 GN=LOC111497875 PE=3 SV=1	[more]
A0A6J1JS55	4.99e-151	95.24	60S ribosomal protein L6-1-like OS=Cucurbita maxima OX=3661 GN=LOC111488421 PE=3...	[more]
A0A0A0K9V0	1.17e-149	94.37	60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_7G428940 PE=3 SV=1	[more]
A0A6J1GSP4	4.78e-149	94.37	60S ribosomal protein L6-3-like OS=Cucurbita moschata OX=3662 GN=LOC111456610 PE...	[more]

BLAST of Cp4.1LG17g08270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18540.1	6.0e-105	83.04	Ribosomal protein L6 family protein	[more]
AT1G74050.1	1.2e-102	82.89	Ribosomal protein L6 family protein	[more]
AT1G74060.1	2.3e-101	82.02	Ribosomal protein L6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005568	Ribosomal protein L6, N-terminal	PFAM	PF03868	Ribosomal_L6e_N	coord: 5..59 e-value: 8.2E-16 score: 58.0
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 85..169 e-value: 9.5E-18 score: 66.0
IPR000915	60S ribosomal protein L6E	PFAM	PF01159	Ribosomal_L6e	coord: 124..231 e-value: 2.6E-39 score: 134.3
IPR000915	60S ribosomal protein L6E	PANTHER	PTHR10715	60S RIBOSOMAL PROTEIN L6	coord: 1..231
IPR000915	60S ribosomal protein L6E	PROSITE	PS01170	RIBOSOMAL_L6E	coord: 125..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..195
None	No IPR available	PANTHER	PTHR10715:SF9	60S RIBOSOMAL PROTEIN L6	coord: 1..231
IPR041997	Ribosomal Protein L6, KOW domain	CDD	cd13156	KOW_RPL6	coord: 79..231 e-value: 3.21674E-79 score: 232.824
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 85..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g08270.1	Cp4.1LG17g08270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome