Cp4.1LG17g08240 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g08240
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	thylakoid lumenal 19 kDa protein, chloroplastic-like
Location	Cp4.1LG17: 5454143 .. 5455490 (+)
RNA-Seq Expression	Cp4.1LG17g08240
Synteny	Cp4.1LG17g08240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAATGGATAAGGAGAAAATCTTAGTGAGGCAAGATAAACCAGAAACCCAATTCCACGAAAATCAATCGCTATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCTGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTAATCCCCGTTCTTCAATCTAATCCCTCTGGCTCACTTTCCTCGTTAACGGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACACCGGCGGCGCTTTCAGTGTCTATTACGGAACCGCCGCCAGTGCCGCTAATTACGGCGGCTTCGGCGGCAACGCAAGCAAGAAAGACTCAGCAGAATACATCTACGACGTGCCGGAAGGCTGGAAGGAGCGATTAGTGTCCAAGGTTGAAAAAGGTATTTCAATTTCGGTAACGAAATCCCTAAATTAAAGAGATCTAACGGCAAATTTCGTTTCGAAAATCGATTTTACGACCTTAATTTTGCAGGTACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGAAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACTGTCGGATCGTATTAGCTTTTGTGTTGTCGTCGGAGATTTGATCGGAGAGAGGTCTGTCGCTGTGTATGAATTTGGTTGTTACATTCTTATTCTTGAATGCAGGAAATCTACTGGTTTTTCACCATAATTTCATCACCAATTTTGATCTTAGAAACCGAAAGTTTTCGGATGATGATTAAATGGTCGGACTTGATGAACATTTCTAAGCTGATTAGCAGGATTGTTATGCTGATTAGCCGGCTAGGCTAATTTAGGGTGTCATCCTGAGTTATCTAGTGGTATCGTGTTTTGGAGGAGCCCAAAACAAAGGCAAAACAAAGGCATTAGAGCTTATACTCAAAGTAGACAATATCATATCATTGTAGAGAGTTGTGTTCCACTAACATGTTACTCGTCAAATCTATTTCCTTTGCAATCAAATAATGCAATTCAAAGGCGTTTTGATTGCC

mRNA sequence

TAAAATGGATAAGGAGAAAATCTTAGTGAGGCAAGATAAACCAGAAACCCAATTCCACGAAAATCAATCGCTATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCTGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTAATCCCCGTTCTTCAATCTAATCCCTCTGGCTCACTTTCCTCGTTAACGGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACACCGGCGGCGCTTTCAGTGTCTATTACGGAACCGCCGCCAGTGCCGCTAATTACGGCGGCTTCGGCGGCAACGCAAGCAAGAAAGACTCAGCAGAATACATCTACGACGTGCCGGAAGGCTGGAAGGAGCGATTAGTGTCCAAGGTTGAAAAAGGTACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGAAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACTGTCGGATCGTATTAGCTTTTGTGTTGTCGTCGGAGATTTGATCGGAGAGAGGTCTGTCGCTGTGTATGAATTTGGTTGTTACATTCTTATTCTTGAATGCAGGAAATCTACTGGTTTTTCACCATAATTTCATCACCAATTTTGATCTTAGAAACCGAAAGTTTTCGGATGATGATTAAATGGTCGGACTTGATGAACATTTCTAAGCTGATTAGCAGGATTGTTATGCTGATTAGCCGGCTAGGCTAATTTAGGGTGTCATCCTGAGTTATCTAGTGGTATCGTGTTTTGGAGGAGCCCAAAACAAAGGCAAAACAAAGGCATTAGAGCTTATACTCAAAGTAGACAATATCATATCATTGTAGAGAGTTGTGTTCCACTAACATGTTACTCGTCAAATCTATTTCCTTTGCAATCAAATAATGCAATTCAAAGGCGTTTTGATTGCC

Coding sequence (CDS)

ATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCTGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTAATCCCCGTTCTTCAATCTAATCCCTCTGGCTCACTTTCCTCGTTAACGGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACACCGGCGGCGCTTTCAGTGTCTATTACGGAACCGCCGCCAGTGCCGCTAATTACGGCGGCTTCGGCGGCAACGCAAGCAAGAAAGACTCAGCAGAATACATCTACGACGTGCCGGAAGGCTGGAAGGAGCGATTAGTGTCCAAGGTTGAAAAAGGTACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGAAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACTGTCGGATCGTATTAG

Protein sequence

MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAVAAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVHESFKTVGSY

Homology

[Close]

BLAST of Cp4.1LG17g08240 vs. ExPASy Swiss-Prot
Match: P82658 (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 285.4 bits (729), Expect = 6.1e-76
Identity = 143/222 (64.41%), Postives = 173/222 (77.93%), Query Frame = 0


Query: 27  SQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAVAAILSTTPPSLADTGGAFSVYYGTAA 86
           ++TP +PK     + S    SL++  A  S + +  +L    P+  +    + +YYGTAA
Sbjct: 15  TRTPIVPK----AIASRLGTSLAAALAATSVLTMVPVL----PAAGEGNQTYKIYYGTAA 74

Query: 87  SAANYGGFGGNASKKDSAEYIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLT 146
           SAANYGG+GGN+ +K SAEY+YDVPEGWKERLVSKVEKGTNGTDSEFYNPKK+ EKEYLT
Sbjct: 75  SAANYGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLT 134

Query: 147 FLAGIRQLAPKDVILNNLALSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHS 206
           FLAG RQLAP+DVILNNLALSDV LQD IA A+   +EE+KDE GQ+YY+YEIDG G HS
Sbjct: 135 FLAGFRQLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHS 194

Query: 207 LISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVHESFKTVGS 249
           LI+VTC+KN+LYAHFVNAP PEW+RD D L H+ +SFKTV S
Sbjct: 195 LITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTVSS 228

[Close]

BLAST of Cp4.1LG17g08240 vs. NCBI nr
Match: XP_023513479.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 481 bits (1239), Expect = 3.77e-171
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
           FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 249
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

[Close]

BLAST of Cp4.1LG17g08240 vs. NCBI nr
Match: KAG7025659.1 (Thylakoid lumenal 19 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 476 bits (1226), Expect = 3.61e-169
Identity = 246/249 (98.80%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSG LSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPPSLAD GGAF+VYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
           FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 249
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

[Close]

BLAST of Cp4.1LG17g08240 vs. NCBI nr
Match: XP_022959905.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 473 bits (1216), Expect = 1.21e-167
Identity = 244/249 (97.99%), Postives = 246/249 (98.80%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSG LSSL+APISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLSAPISAIAV 60

Query: 61  AAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPPSLAD GGAF+VYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
            SAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 ISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 249
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

[Close]

BLAST of Cp4.1LG17g08240 vs. NCBI nr
Match: XP_023004635.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 465 bits (1196), Expect = 1.35e-164
Identity = 241/249 (96.79%), Postives = 243/249 (97.59%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIP LQSN  G LSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPFLQSNTPGPLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPP LA TGGAF+VYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPLLAATGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
           FSAEE+KDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEERKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 249
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

[Close]

BLAST of Cp4.1LG17g08240 vs. NCBI nr
Match: XP_038896859.1 (thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 421 bits (1081), Expect = 4.70e-147
Identity = 223/253 (88.14%), Postives = 231/253 (91.30%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPIS---- 60
           MATAI+PLAFFSA AAA+TG   PKP QTPPLPKP IP+LQS P   LS+ TAPIS    
Sbjct: 1   MATAITPLAFFSA-AAASTGTTAPKPPQTPPLPKPQIPILQSKPP--LSTSTAPISIAAT 60

Query: 61  AIAVAAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKE 120
            IAVAAILSTTPPSLADTG AF+VYYGTAASAANYGG GGNASKKD+AEYIYDVPEGWKE
Sbjct: 61  TIAVAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKE 120

Query: 121 RLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIA 180
           RLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIA
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 180

Query: 181 SAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDML 240
           SAE F AEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDML
Sbjct: 181 SAESFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 240

Query: 241 RHVHESFKTVGSY 249
           RHVHESFKT+GSY
Sbjct: 241 RHVHESFKTIGSY 250

[Close]

BLAST of Cp4.1LG17g08240 vs. ExPASy TrEMBL
Match: A0A6J1H7M1 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460820 PE=4 SV=1)

HSP 1 Score: 473 bits (1216), Expect = 5.85e-168
Identity = 244/249 (97.99%), Postives = 246/249 (98.80%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSG LSSL+APISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLSAPISAIAV 60

Query: 61  AAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPPSLAD GGAF+VYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
            SAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 ISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 249
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

[Close]

BLAST of Cp4.1LG17g08240 vs. ExPASy TrEMBL
Match: A0A6J1KV54 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111497869 PE=4 SV=1)

HSP 1 Score: 465 bits (1196), Expect = 6.54e-165
Identity = 241/249 (96.79%), Postives = 243/249 (97.59%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIP LQSN  G LSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPFLQSNTPGPLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPP LA TGGAF+VYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPLLAATGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
           FSAEE+KDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEERKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 249
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

[Close]

BLAST of Cp4.1LG17g08240 vs. ExPASy TrEMBL
Match: A0A5D3CG07 (Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00930 PE=4 SV=1)

HSP 1 Score: 401 bits (1030), Expect = 1.34e-139
Identity = 212/253 (83.79%), Postives = 226/253 (89.33%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPIS---- 60
           MATAI+PLAF ++  AA+TG   PK  QT PLPKP IP+LQS    S+S  TAPIS    
Sbjct: 1   MATAIAPLAFLTS-TAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSIS--TAPISIAAT 60

Query: 61  AIAVAAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKE 120
           AIAVAAIL+T PPSLADTG AF+VYYGTAASAANYGG GGNA+KKD+AEY+YDVPEGWKE
Sbjct: 61  AIAVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKE 120

Query: 121 RLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIA 180
           RLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIA
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 180

Query: 181 SAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDML 240
           SAE F A+EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDML
Sbjct: 181 SAESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 240

Query: 241 RHVHESFKTVGSY 249
           RHVHESFKTVGSY
Sbjct: 241 RHVHESFKTVGSY 250

[Close]

BLAST of Cp4.1LG17g08240 vs. ExPASy TrEMBL
Match: A0A1S3CES2 (thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499916 PE=4 SV=1)

HSP 1 Score: 401 bits (1030), Expect = 1.34e-139
Identity = 212/253 (83.79%), Postives = 226/253 (89.33%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPIS---- 60
           MATAI+PLAF ++  AA+TG   PK  QT PLPKP IP+LQS    S+S  TAPIS    
Sbjct: 1   MATAIAPLAFLTS-TAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSIS--TAPISIAAT 60

Query: 61  AIAVAAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKE 120
           AIAVAAIL+T PPSLADTG AF+VYYGTAASAANYGG GGNA+KKD+AEY+YDVPEGWKE
Sbjct: 61  AIAVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKE 120

Query: 121 RLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIA 180
           RLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIA
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 180

Query: 181 SAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDML 240
           SAE F A+EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDML
Sbjct: 181 SAESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 240

Query: 241 RHVHESFKTVGSY 249
           RHVHESFKTVGSY
Sbjct: 241 RHVHESFKTVGSY 250

[Close]

BLAST of Cp4.1LG17g08240 vs. ExPASy TrEMBL
Match: A0A6J1JN94 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488417 PE=4 SV=1)

HSP 1 Score: 398 bits (1023), Expect = 2.65e-138
Identity = 212/249 (85.14%), Postives = 223/249 (89.56%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAV 60
           MATAISPLAFFSA AAA+TG   PK  Q P +    IP+LQS PS  LSSLTA  SAIA+
Sbjct: 24  MATAISPLAFFSA-AAASTGTTAPKLPQKPQI----IPILQSKPS--LSSLTAACSAIAI 83

Query: 61  AAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAI+ST+PPSLAD G AF+VYYGTAASAANYGG GGNA KKDSAEY+YDVP+GWKERLVS
Sbjct: 84  AAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVS 143

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASAE 
Sbjct: 144 KVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAES 203

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
           FSAEEKKDENGQIYY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHVH
Sbjct: 204 FSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVH 263

Query: 241 ESFKTVGSY 249
           ESFKT+GSY
Sbjct: 264 ESFKTIGSY 265

[Close]

BLAST of Cp4.1LG17g08240 vs. TAIR 10
Match: AT3G63540.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 231.5 bits (589), Expect = 7.4e-61
Identity = 109/140 (77.86%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 109 DVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSD 168
           +V EGWKERLVSKVEKGTNGTDSEFYNPKK+ EKEYLTFLAG RQLAP+DVILNNLALSD
Sbjct: 3   EVEEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSD 62

Query: 169 VNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPE 228
           V LQD IA A+   +EE+KDE GQ+YY+YEIDG G HSLI+VTC+KNKLYAHFVNAP PE
Sbjct: 63  VELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKLYAHFVNAPAPE 122

Query: 229 WDRDQDMLRHVHESFKTVGS 249
           W+RD D L H+ +SFKTV S
Sbjct: 123 WNRDHDTLTHLRDSFKTVSS 142

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g08240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82658	6.1e-76	64.41	Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cp4.1LG17g08240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513479.1	3.77e-171	100.00	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]
KAG7025659.1	3.61e-169	98.80	Thylakoid lumenal 19 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. a...	[more]
XP_022959905.1	1.21e-167	97.99	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita moschata]	[more]
XP_023004635.1	1.35e-164	96.79	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_038896859.1	4.70e-147	88.14	thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida]	[more]

BLAST of Cp4.1LG17g08240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7M1	5.85e-168	97.99	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1KV54	6.54e-165	96.79	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661...	[more]
A0A5D3CG07	1.34e-139	83.79	Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CES2	1.34e-139	83.79	thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1JN94	2.65e-138	85.14	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661...	[more]

BLAST of Cp4.1LG17g08240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63540.1	7.4e-61	77.86	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 87..245 e-value: 1.0E-16 score: 63.3
None	No IPR available	PANTHER	PTHR31407:SF20	THYLAKOID LUMENAL 19 KDA PROTEIN, CHLOROPLASTIC	coord: 2..246
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 2..246
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 104..244 e-value: 2.2E-10 score: 40.8
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 103..245

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g08240.1	Cp4.1LG17g08240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding